Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	W	I	M	L	A	T	L	A	V	V	F	V	V	G	F	R	V	L	T	S	G	A	R	K	A	I	R	R	L	S	D	R	L	N	I	D	V	V	P	V	E	S	M	V	D	Q	M	G	K	S	A	G	D	E	F	L	R	Y
Secondary structure
SS confidence
Disorder		?																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	H	R	P	D	E	S	H	L	Q	N	A	A	Q	V	L	L	I	W	Q	I	V	I	V	D	G	S	E	Q	N	L	L	Q	W	H	R	I	L	Q	K	A	R	L	A	A	P	I	T	D	A	Q	V	R	L	A	L	G	F	L	R
Secondary structure
SS confidence
Disorder						?																																				?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Sequence		E	T	E	P	E	M	Q	D	I	N	A	F	Q	M	R	Y	N	A	F	F	Q	P	A	E	G	V	H	W	L	H
Secondary structure
SS confidence
Disorder																					?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xn7 chain A Region: 28 - 51 Aligned: 24 Modelled: 24 Confidence: 58.5% Identity: 33% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Hypothetical protein YhgG Phyre2 PDB 1k8k chain G Region: 24 - 84 Aligned: 61 Modelled: 61 Confidence: 58.1% Identity: 23% Fold: alpha-alpha superhelix Superfamily: Arp2/3 complex 16 kDa subunit ARPC5 Family: Arp2/3 complex 16 kDa subunit ARPC5 Phyre2 PDB 1ylf chain A domain 1 Region: 6 - 51 Aligned: 42 Modelled: 46 Confidence: 48.9% Identity: 7% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional regulator Rrf2 Phyre2 PDB 3k69 chain A Region: 6 - 51 Aligned: 42 Modelled: 46 Confidence: 44.5% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution Phyre2 PDB 1vct chain A domain 1 Region: 38 - 62 Aligned: 25 Modelled: 25 Confidence: 41.2% Identity: 8% Fold: Spectrin repeat-like Superfamily: PhoU-like Family: PhoU-like Phyre2 PDB 1xqo chain A Region: 23 - 86 Aligned: 57 Modelled: 64 Confidence: 40.8% Identity: 11% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: AgoG-like Phyre2 PDB 2iht chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 40.5% Identity: 55% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 3dwl chain G Region: 24 - 87 Aligned: 60 Modelled: 64 Confidence: 40.4% Identity: 20% PDB header:structural protein Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit Phyre2 PDB 1s8n chain A Region: 80 - 125 Aligned: 46 Modelled: 46 Confidence: 37.1% Identity: 9% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1xd7 chain A Region: 6 - 51 Aligned: 40 Modelled: 46 Confidence: 33.2% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional regulator Rrf2 Phyre2 PDB 1ufm chain A Region: 28 - 49 Aligned: 22 Modelled: 22 Confidence: 32.7% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PCI domain (PINT motif) Phyre2 PDB 1t9b chain A domain 1 Region: 12 - 41 Aligned: 30 Modelled: 30 Confidence: 29.9% Identity: 33% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 2ji7 chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 29.7% Identity: 21% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 1q6z chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 29.6% Identity: 28% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 1zpd chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 28.0% Identity: 28% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 1ozh chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 27.7% Identity: 31% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 3c3m chain A Region: 79 - 125 Aligned: 46 Modelled: 47 Confidence: 26.1% Identity: 26% PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 Phyre2 PDB 2vbg chain B Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 24.4% Identity: 17% PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp Phyre2 PDB 1pvd chain A domain 1 Region: 12 - 40 Aligned: 29 Modelled: 29 Confidence: 23.2% Identity: 10% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 1p6q chain A Region: 80 - 125 Aligned: 46 Modelled: 46 Confidence: 23.0% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 1 d1xn7a_ 2 d1k8kg_ 3 d1ylfa1 4 c3k69A_ 5 d1vcta1 6 d1xqoa_ 7 d2ihta1 8 c3dwlG_ 9 d1s8na_ 10 d1xd7a_ 11 d1ufma_ 12 d1t9ba1 13 d2ji7a1 14 d1q6za1 15 d1zpda1 16 d1ozha1 17 c3c3mA_ 18 c2vbgB_ 19 d1pvda1 20 d1p6qa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xn7a_ 58.5 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 2 d1k8kg_ 58.1 23 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 3 d1ylfa1 48.9 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 4 c3k69A_ 44.5 17 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 5 d1vcta1 41.2 8 Fold:Spectrin repeat-like Superfamily:PhoU-like Family:PhoU-like 6 d1xqoa_ 40.8 11 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 7 d2ihta1 40.5 55 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 8 c3dwlG_ 40.4 20 PDB header:structural protein Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 9 d1s8na_ 37.1 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 10 d1xd7a_ 33.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 11 d1ufma_ 32.7 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 12 d1t9ba1 29.9 33 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 13 d2ji7a1 29.7 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 14 d1q6za1 29.6 28 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 15 d1zpda1 28.0 28 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 16 d1ozha1 27.7 31 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 17 c3c3mA_ 26.1 26 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 18 c2vbgB_ 24.4 17 PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp 19 d1pvda1 23.2 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 20 d1p6qa_ 23.0 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 21 c2y75F_ not modelled 20.9 7 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 22 d1u0sy_ not modelled 20.5 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 23 c3t6kB_ not modelled 20.4 20 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 24 d1jbea_ not modelled 19.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 25 c3h1gA_ not modelled 17.7 13 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 26 d1ovma1 not modelled 17.2 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 27 c3c5tB_ not modelled 16.9 26 PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:exendin-4; PDBTitle: crystal structure of the ligand-bound glucagon-like peptide-1 receptor2 extracellular domain 28 c3hzhA_ not modelled 16.8 21 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 29 c3khtA_ not modelled 16.8 11 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 30 d1ny5a1 not modelled 16.7 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 31 c1ojhK_ not modelled 16.2 19 PDB header:protein binding Chain: K: PDB Molecule:nbla; PDBTitle: crystal structure of nbla from pcc 7120 32 d2pl1a1 not modelled 16.0 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 33 c2qxyB_ not modelled 16.0 24 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 34 c2zwmA_ not modelled 15.9 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 35 c3i42A_ not modelled 15.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 36 c1zpdA_ not modelled 15.7 28 PDB header:alcohol fermentation Chain: A: PDB Molecule:pyruvate decarboxylase; PDBTitle: pyruvate decarboxylase from zymomonas mobilis 37 c3grcD_ not modelled 15.6 13 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 38 d2fug21 not modelled 15.6 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 39 d1ojha_ not modelled 15.5 19 Fold:NblA-like Superfamily:NblA-like Family:NblA-like 40 d1zgza1 not modelled 15.3 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 41 c3txmA_ not modelled 15.3 18 PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex 42 c3cg4A_ not modelled 15.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 43 c3c97A_ not modelled 14.8 13 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 44 c3hv2B_ not modelled 13.5 22 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 45 d1mvoa_ not modelled 13.4 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 46 c3cf4G_ not modelled 13.3 21 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 47 d1ybha1 not modelled 13.3 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 48 c1jrjA_ not modelled 13.1 29 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 49 d1ig6a_ not modelled 13.0 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 50 c2j48A_ not modelled 12.3 18 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 51 c3a0rB_ not modelled 12.2 18 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 52 d1kgsa2 not modelled 12.1 7 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 53 c1ozhD_ not modelled 12.0 31 PDB header:lyase Chain: D: PDB Molecule:acetolactate synthase, catabolic; PDBTitle: the crystal structure of klebsiella pneumoniae acetolactate2 synthase with enzyme-bound cofactor and with an unusual3 intermediate. 54 d2ayxa1 not modelled 11.7 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 55 d1bgpa_ not modelled 11.6 26 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:CCP-like 56 d1ys7a2 not modelled 11.5 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 57 c1d0rA_ not modelled 10.9 22 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 58 d2ez9a1 not modelled 10.9 25 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 59 c3cixA_ not modelled 10.8 26 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 60 d1yioa2 not modelled 10.6 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c2rohA_ not modelled 10.4 18 PDB header:dna binding protein Chain: A: PDB Molecule:telomere binding protein-1; PDBTitle: the dna binding domain of rtbp1 62 c3rceA_ not modelled 10.3 26 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 63 c2qzjC_ not modelled 10.2 18 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 64 d2a9pa1 not modelled 10.2 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 c2rjnA_ not modelled 9.8 22 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 66 c2jrzA_ not modelled 9.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:histone demethylase jarid1c; PDBTitle: solution structure of the bright/arid domain from the human2 jarid1c protein. 67 c2ji6B_ not modelled 9.7 21 PDB header:lyase Chain: B: PDB Molecule:oxalyl-coa decarboxylase; PDBTitle: x-ray structure of oxalyl-coa decarboxylase in complex with2 3-deaza-thdp and oxalyl-coa 68 d1dbwa_ not modelled 9.5 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 69 c2hqoA_ not modelled 9.5 7 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 70 c3j08A_ not modelled 9.5 19 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 71 d1q3ma_ not modelled 9.3 29 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 72 c3lwfD_ not modelled 9.2 13 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 73 c3gl9B_ not modelled 9.2 24 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 74 c2bpbB_ not modelled 9.1 23 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 75 c2jxjA_ not modelled 9.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:histone demethylase jarid1a; PDBTitle: nmr structure of the arid domain from the histone h3k42 demethylase rbp2 76 c3r0jA_ not modelled 8.8 22 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 77 d1w36d1 not modelled 8.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 78 c3f6cB_ not modelled 8.7 13 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 79 c3b2nA_ not modelled 8.7 9 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 80 c3hdgE_ not modelled 8.6 11 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 81 c2panF_ not modelled 8.6 21 PDB header:lyase Chain: F: PDB Molecule:glyoxylate carboligase; PDBTitle: crystal structure of e. coli glyoxylate carboligase 82 c1xmeB_ not modelled 8.5 6 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 83 c1k8vA_ not modelled 8.5 43 PDB header:unknown function Chain: A: PDB Molecule:neuropeptide f; PDBTitle: the nmr-derived conformation of neuropeptide f from2 moniezia expansa 84 c3eodA_ not modelled 8.4 20 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 85 d1heya_ not modelled 8.2 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 86 c3hdlA_ not modelled 8.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:royal palm tree peroxidase; PDBTitle: crystal structure of highly glycosylated peroxidase from royal palm2 tree 87 c2nxwB_ not modelled 8.2 31 PDB header:lyase Chain: B: PDB Molecule:phenyl-3-pyruvate decarboxylase; PDBTitle: crystal structure of phenylpyruvate decarboxylase of azospirillum2 brasilense 88 d1xg7a_ not modelled 8.1 7 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 89 d1qh8a_ not modelled 8.1 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 90 d1pa2a_ not modelled 8.0 26 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:CCP-like 91 d1o6ea_ not modelled 8.0 19 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 92 c1hr6C_ not modelled 7.9 11 PDB header:hydrolase Chain: C: PDB Molecule:mitochondrial processing peptidase alpha subunit; PDBTitle: yeast mitochondrial processing peptidase 93 c3cg0A_ not modelled 7.6 11 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 94 c3mmnA_ not modelled 7.6 14 PDB header:transferase Chain: A: PDB Molecule:histidine kinase homolog; PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+ 95 d2djia1 not modelled 7.5 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 96 c2pgnA_ not modelled 7.5 31 PDB header:hydrolase Chain: A: PDB Molecule:cyclohexane-1,2-dione hydrolase (cdh); PDBTitle: the crystal structure of fad and thdp-dependent cyclohexane-1,2-dione2 hydrolase in complex with cyclohexane-1,2-dione 97 d1qkka_ not modelled 7.3 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 98 c1fp2A_ not modelled 7.3 15 PDB header:transferase Chain: A: PDB Molecule:isoflavone o-methyltransferase; PDBTitle: crystal structure analysis of isoflavone o-methyltransferase 99 d2ev0a1 not modelled 7.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0