Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	A	R	V	T	V	A	G	M	G	L	V	M	E	V	Q	D	Y	F	D	G	E	A	D	R	L	A	K	A	W	L	A	E	Y	T	P	Q	I	K	S	L	K	D	E	R	K	E	A	Y	R	Q	I	V	E	M	S	T	E	P
Secondary structure
SS confidence
Disorder		?	?	?						?	?	?	?																													?	?	?												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	D	V	D	L	V	R	P	A	N	K	F	E	M	T	R	V	R	E	G	E	K	E	A	D	L	P	V	W	K	H	H	L	L	C	D	E	S	G	N	Y	P	A	L	L	N	H	W	E	T	K	V	F	E	I	E	T	K	R	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	F	A	F	W	Y	R	N	P	Q	Y	T	G	Q	S	S	L	G	I	A	Y	V	E	A	E	Q	Y	K	I	V	R	P	D	F	L	F	F	A	E	Q	D	G	K	M	V	V	D	L	V	D	P	H	S	L	H	L	A	D	A	L
Secondary structure
SS confidence
Disorder													?	?	?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	K	L	E	G	L	A	L	Y	A	E	H	H	S	D	A	Y	R	R	I	E	S	V	A	E	V	K	G	K	L	R	V	L	D	L	K	R	Q	D	V	Q	D	A	V	A	T	A	E	N	A	E	T	L	F	S	S	G	L	A	D
Secondary structure
SS confidence
Disorder															?										?	?	?	?	?								?	?	?	?							?	?	?	?	?					?	?	?	?	?	?
Disorder confidence
		.	.	.
Sequence		D	Y	Q
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t0f chain A domain 2 Region: 144 - 201 Aligned: 58 Modelled: 58 Confidence: 63.7% Identity: 16% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: TnsA endonuclease, N-terminal domain Phyre2 PDB 1pk8 chain A domain 1 Region: 140 - 158 Aligned: 19 Modelled: 19 Confidence: 43.2% Identity: 16% Fold: PreATP-grasp domain Superfamily: PreATP-grasp domain Family: Synapsin domain Phyre2 PDB 1i7n chain A domain 1 Region: 140 - 164 Aligned: 25 Modelled: 25 Confidence: 41.3% Identity: 20% Fold: PreATP-grasp domain Superfamily: PreATP-grasp domain Family: Synapsin domain Phyre2 PDB 1i7n chain A Region: 137 - 163 Aligned: 27 Modelled: 27 Confidence: 38.8% Identity: 15% PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Phyre2 PDB 2fqz chain C Region: 138 - 156 Aligned: 19 Modelled: 19 Confidence: 27.8% Identity: 16% PDB header:hydrolase/dna Chain: C: PDB Molecule:r.ecl18ki; PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna Phyre2 PDB 2vo1 chain A domain 1 Region: 139 - 158 Aligned: 20 Modelled: 20 Confidence: 21.9% Identity: 15% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 3ctw chain B Region: 9 - 30 Aligned: 22 Modelled: 22 Confidence: 20.2% Identity: 41% PDB header:protein binding Chain: B: PDB Molecule:rcda; PDBTitle: crystal structure of rcda from caulobacter crescentus cb15 Phyre2 PDB 1az3 chain A Region: 150 - 168 Aligned: 19 Modelled: 19 Confidence: 20.1% Identity: 26% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Restriction endonuclease EcoRV Phyre2 PDB 1sx5 chain A Region: 150 - 168 Aligned: 19 Modelled: 19 Confidence: 18.5% Identity: 26% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Restriction endonuclease EcoRV Phyre2 PDB 1cf7 chain B Region: 19 - 91 Aligned: 54 Modelled: 54 Confidence: 18.5% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Cell cycle transcription factor e2f-dp Phyre2 PDB 2oug chain C Region: 146 - 163 Aligned: 18 Modelled: 18 Confidence: 17.9% Identity: 17% PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution Phyre2 PDB 3bm3 chain A Region: 138 - 156 Aligned: 19 Modelled: 19 Confidence: 16.2% Identity: 42% PDB header:hydrolase/dna Chain: A: PDB Molecule:pspgi restriction endonuclease; PDBTitle: restriction endonuclease pspgi-substrate dna complex Phyre2 PDB 1c8d chain A Region: 48 - 112 Aligned: 65 Modelled: 65 Confidence: 15.8% Identity: 14% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: ssDNA viruses Family: Parvoviridae-like VP Phyre2 PDB 2hke chain B Region: 121 - 157 Aligned: 33 Modelled: 37 Confidence: 14.8% Identity: 18% PDB header:lyase Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative; PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei Phyre2 PDB 1o7n chain A domain 1 Region: 88 - 172 Aligned: 76 Modelled: 85 Confidence: 14.1% Identity: 20% Fold: ISP domain Superfamily: ISP domain Family: Ring hydroxylating alpha subunit ISP domain Phyre2 PDB 1qhd chain A domain 2 Region: 120 - 173 Aligned: 54 Modelled: 54 Confidence: 14.0% Identity: 19% Fold: Viral protein domain Superfamily: Viral protein domain Family: Top domain of virus capsid protein Phyre2 PDB 1f1z chain B Region: 144 - 201 Aligned: 58 Modelled: 58 Confidence: 13.9% Identity: 17% PDB header:dna binding protein Chain: B: PDB Molecule:tnsa endonuclease; PDBTitle: tnsa, a catalytic component of the tn7 transposition system Phyre2 PDB 1x82 chain A Region: 119 - 133 Aligned: 15 Modelled: 15 Confidence: 13.8% Identity: 20% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Glucose-6-phosphate isomerase, GPI Phyre2 PDB 1s58 chain A Region: 48 - 113 Aligned: 64 Modelled: 65 Confidence: 13.1% Identity: 14% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: ssDNA viruses Family: Parvoviridae-like VP Phyre2 PDB 1m0d chain A Region: 136 - 156 Aligned: 20 Modelled: 21 Confidence: 12.2% Identity: 45% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Endonuclease I (Holliday junction resolvase) Phyre2 1 d1t0fa2 2 d1pk8a1 3 d1i7na1 4 c1i7nA_ 5 c2fqzC_ 6 d2vo1a1 7 c3ctwB_ 8 d1az3a_ 9 d1sx5a_ 10 d1cf7b_ 11 c2ougC_ 12 c3bm3A_ 13 d1c8da_ 14 c2hkeB_ 15 d1o7na1 16 d1qhda2 17 c1f1zB_ 18 d1x82a_ 19 d1s58a_ 20 d1m0da_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t0fa2 63.7 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:TnsA endonuclease, N-terminal domain 2 d1pk8a1 43.2 16 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 3 d1i7na1 41.3 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 4 c1i7nA_ 38.8 15 PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain 5 c2fqzC_ 27.8 16 PDB header:hydrolase/dna Chain: C: PDB Molecule:r.ecl18ki; PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna 6 d2vo1a1 21.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 7 c3ctwB_ 20.2 41 PDB header:protein binding Chain: B: PDB Molecule:rcda; PDBTitle: crystal structure of rcda from caulobacter crescentus cb15 8 d1az3a_ 20.1 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 9 d1sx5a_ 18.5 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 10 d1cf7b_ 18.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 11 c2ougC_ 17.9 17 PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution 12 c3bm3A_ 16.2 42 PDB header:hydrolase/dna Chain: A: PDB Molecule:pspgi restriction endonuclease; PDBTitle: restriction endonuclease pspgi-substrate dna complex 13 d1c8da_ 15.8 14 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 14 c2hkeB_ 14.8 18 PDB header:lyase Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative; PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei 15 d1o7na1 14.1 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 16 d1qhda2 14.0 19 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 17 c1f1zB_ 13.9 17 PDB header:dna binding protein Chain: B: PDB Molecule:tnsa endonuclease; PDBTitle: tnsa, a catalytic component of the tn7 transposition system 18 d1x82a_ 13.8 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 19 d1s58a_ 13.1 14 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 20 d1m0da_ 12.2 45 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 21 d2i8da1 not modelled 12.0 9 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 22 d2vv5a2 not modelled 11.4 28 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 23 d1a21a2 not modelled 11.2 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 24 d2raqa1 not modelled 10.8 25 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 25 c1k3vA_ not modelled 10.7 11 PDB header:virus Chain: A: PDB Molecule:capsid protein vp2; PDBTitle: porcine parvovirus capsid 26 d1k3va_ not modelled 10.7 11 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 27 c1mtpB_ not modelled 10.1 22 PDB header:structural genomics Chain: B: PDB Molecule:serine proteinase inhibitor (serpin), chain b; PDBTitle: the x-ray crystal structure of a serpin from a thermophilic2 prokaryote 28 d1tf5a2 not modelled 10.0 13 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 29 d1uw4a_ not modelled 9.9 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 30 d1g8fa3 not modelled 9.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 31 d1gd8a_ not modelled 9.8 29 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 32 c3f59A_ not modelled 9.2 20 PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin 33 d1na6a2 not modelled 9.2 38 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Type II restriction endonuclease catalytic domain 34 d1dfca2 not modelled 8.9 10 Fold:beta-Trefoil Superfamily:Actin-crosslinking proteins Family:Fascin 35 d2c1wa1 not modelled 8.8 19 Fold:EndoU-like Superfamily:EndoU-like Family:Eukaryotic EndoU ribonuclease 36 d3bpda1 not modelled 8.4 25 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 37 c3no0B_ not modelled 8.3 16 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain 38 d1gxua_ not modelled 8.2 9 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 39 c3entB_ not modelled 8.2 26 PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65) 40 c3a0oB_ not modelled 8.0 24 PDB header:lyase Chain: B: PDB Molecule:oligo alginate lyase; PDBTitle: crystal structure of alginate lyase from agrobacterium tumefaciens c58 41 d1igwa_ not modelled 7.9 15 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 42 d1e1oa1 not modelled 7.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 43 d2zjrk1 not modelled 7.6 29 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 44 d1k9ca_ not modelled 7.6 36 Fold:P-domain of calnexin/calreticulin Superfamily:P-domain of calnexin/calreticulin Family:P-domain of calnexin/calreticulin 45 c2bjeA_ not modelled 7.6 20 PDB header:hydrolase Chain: A: PDB Molecule:acylphosphatase; PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group 46 c2q1fA_ not modelled 7.5 17 PDB header:lyase Chain: A: PDB Molecule:chondroitinase; PDBTitle: crystal structure of chondroitin sulfate lyase abc from bacteroides2 thetaiotaomicron wal2926 47 c2eceA_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 48 d2cqma1 not modelled 7.4 21 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 49 d2qamn1 not modelled 7.2 36 Fold:Prokaryotic ribosomal protein L17 Superfamily:Prokaryotic ribosomal protein L17 Family:Prokaryotic ribosomal protein L17 50 c1qhdA_ not modelled 7.2 19 PDB header:viral protein Chain: A: PDB Molecule:viral capsid vp6; PDBTitle: crystal structure of vp6, the major capsid protein of group a2 rotavirus 51 c3pisA_ not modelled 7.2 32 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 52 d1nz8a_ not modelled 7.0 29 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 53 d1sa3a_ not modelled 6.7 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease MspI 54 d1r3ha2 not modelled 6.5 24 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 55 d1krta_ not modelled 6.5 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 56 d1m1ha2 not modelled 6.5 6 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 57 d1v97a3 not modelled 6.5 15 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 58 d1c4ea_ not modelled 6.4 60 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Gurmarin-like Family:Gurmarin, a sweet taste-suppressing polypeptide 59 c2k06A_ not modelled 6.3 6 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 60 c3bboP_ not modelled 6.3 7 PDB header:ribosome Chain: P: PDB Molecule:ribosomal protein l17; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 61 c3e5bB_ not modelled 6.3 18 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 62 d1lp3a_ not modelled 6.0 11 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 63 d2coaa1 not modelled 6.0 6 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 64 c2z84A_ not modelled 5.9 17 PDB header:hydrolase Chain: A: PDB Molecule:ufm1-specific protease 1; PDBTitle: insights from crystal and solution structures of mouse ufsp1 65 d1f61a_ not modelled 5.9 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 66 c2r8rB_ not modelled 5.9 26 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 67 d2oc6a1 not modelled 5.8 17 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 68 d3elna1 not modelled 5.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 69 c3hzpA_ not modelled 5.8 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 70 c2raxY_ not modelled 5.7 19 PDB header:cell cycle Chain: Y: PDB Molecule:borealin; PDBTitle: crystal structure of borealin (20-78) bound to survivin (1-120) 71 c3eubL_ not modelled 5.7 17 PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 72 c3c4mA_ not modelled 5.6 8 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 73 d1bbua1 not modelled 5.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 74 d1w2ia_ not modelled 5.5 26 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 75 d1mn3a_ not modelled 5.4 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 76 d1apsa_ not modelled 5.3 20 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 77 d1urra_ not modelled 5.3 33 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 78 c2x3dC_ not modelled 5.3 25 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 79 d1ei1a1 not modelled 5.3 14 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 80 d1jhna3 not modelled 5.0 36 Fold:P-domain of calnexin/calreticulin Superfamily:P-domain of calnexin/calreticulin Family:P-domain of calnexin/calreticulin 81 d3b9jc1 not modelled 5.0 17 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 82 d1z1ba1 not modelled 5.0 30 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0