Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	L	I	L	F	S	T	R	D	G	Q	T	R	E	I	A	S	Y	L	A	S	E	L	K	E	L	G	I	Q	A	D	V	A	N	V	H	R	I	E	E	P	Q	W	E	N	Y	D	R	V	V	I	G	A	S	I	R	Y	G
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	Y	H	S	A	F	Q	E	F	V	K	K	H	A	T	R	L	N	S	M	P	S	A	F	Y	S	V	N	L	V	A	R	K	P	E	K	R	T	P	Q	T	N	S	Y	A	R	K	F	L	M	N	S	Q	W	R	P	D	R	C	A
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	I	A	G	A	L	R	Y	P	R	Y	R	W	Y	D	R	F	M	I	K	L	I	M	K	M	S	G	G	E	T	D	T	R	K	E	V	V	Y	T	D	W	E	Q	V	A	N	F	A	R	E	I	A	H	L	T	D	K	P	T	L
Secondary structure
SS confidence
Disorder																											?		?	?	?	?	?	?	?	?																					?	?	?	?	?
Disorder confidence
		.
Sequence		K
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ag9 chain A Region: 3 - 176 Aligned: 164 Modelled: 174 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2ark chain A domain 1 Region: 2 - 177 Aligned: 157 Modelled: 160 Confidence: 99.9% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1yob chain A domain 1 Region: 2 - 173 Aligned: 162 Modelled: 172 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1obo chain A Region: 2 - 173 Aligned: 161 Modelled: 172 Confidence: 99.9% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2wc1 chain A Region: 1 - 173 Aligned: 163 Modelled: 173 Confidence: 99.9% Identity: 18% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Phyre2 PDB 1czn chain A Region: 2 - 173 Aligned: 162 Modelled: 172 Confidence: 99.8% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2fcr chain A Region: 2 - 173 Aligned: 162 Modelled: 172 Confidence: 99.8% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2a5l chain A domain 1 Region: 2 - 177 Aligned: 155 Modelled: 158 Confidence: 99.8% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1e5d chain A domain 1 Region: 2 - 176 Aligned: 139 Modelled: 146 Confidence: 99.8% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1fue chain A Region: 2 - 173 Aligned: 157 Modelled: 172 Confidence: 99.8% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1ycg chain A domain 1 Region: 1 - 176 Aligned: 141 Modelled: 148 Confidence: 99.8% Identity: 11% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1vme chain A domain 1 Region: 2 - 172 Aligned: 135 Modelled: 142 Confidence: 99.8% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1tll chain A domain 2 Region: 1 - 175 Aligned: 138 Modelled: 139 Confidence: 99.8% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1ydg chain A Region: 1 - 177 Aligned: 163 Modelled: 166 Confidence: 99.8% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1ykg chain A domain 1 Region: 3 - 179 Aligned: 141 Modelled: 141 Confidence: 99.8% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 3b6i chain B Region: 2 - 177 Aligned: 168 Modelled: 172 Confidence: 99.8% Identity: 18% PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure Phyre2 PDB 3f6s chain I Region: 2 - 175 Aligned: 141 Modelled: 144 Confidence: 99.8% Identity: 20% PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers Phyre2 PDB 3d7n chain A Region: 2 - 177 Aligned: 147 Modelled: 149 Confidence: 99.8% Identity: 15% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens Phyre2 PDB 2fz5 chain A domain 1 Region: 3 - 173 Aligned: 133 Modelled: 133 Confidence: 99.8% Identity: 11% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3klb chain A Region: 2 - 171 Aligned: 127 Modelled: 138 Confidence: 99.8% Identity: 15% PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution Phyre2 1 d1ag9a_ 2 d2arka1 3 d1yoba1 4 d1oboa_ 5 c2wc1A_ 6 d1czna_ 7 d2fcra_ 8 d2a5la1 9 d1e5da1 10 d1fuea_ 11 d1ycga1 12 d1vmea1 13 d1tlla2 14 d1ydga_ 15 d1ykga1 16 c3b6iB_ 17 c3f6sI_ 18 c3d7nA_ 19 d2fz5a1 20 c3klbA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ag9a_ 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 2 d2arka1 99.9 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 3 d1yoba1 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 4 d1oboa_ 99.9 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 5 c2wc1A_ 99.9 18 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 6 d1czna_ 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 7 d2fcra_ 99.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 8 d2a5la1 99.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 9 d1e5da1 99.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 10 d1fuea_ 99.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 11 d1ycga1 99.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 12 d1vmea1 99.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 13 d1tlla2 99.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 14 d1ydga_ 99.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 15 d1ykga1 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 16 c3b6iB_ 99.8 18 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 17 c3f6sI_ 99.8 20 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 18 c3d7nA_ 99.8 15 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 19 d2fz5a1 99.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 c3klbA_ 99.8 15 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 21 c1ychD_ not modelled 99.8 12 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 22 c2zkiH_ not modelled 99.8 16 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 23 c2ohiB_ not modelled 99.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 24 c3hlyA_ not modelled 99.8 9 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 25 c1vmeB_ not modelled 99.7 17 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 26 c2q9uB_ not modelled 99.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 27 d5nula_ not modelled 99.7 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 28 c3fniA_ not modelled 99.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 29 c1bvyF_ not modelled 99.7 14 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 30 d1bvyf_ not modelled 99.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 31 c3hr4C_ not modelled 99.7 14 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 32 d1b1ca_ not modelled 99.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 33 c2hnbA_ not modelled 99.7 12 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 34 c3edoA_ not modelled 99.7 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 35 d1ja1a2 not modelled 99.7 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 36 c1e5dA_ not modelled 99.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 37 c1tllA_ not modelled 99.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 38 d1f4pa_ not modelled 99.6 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 39 c2bpoA_ not modelled 99.5 14 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 40 c1j9zB_ not modelled 99.5 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 41 c3lcmB_ not modelled 99.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 42 d1rtta_ not modelled 99.4 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 43 d1t0ia_ not modelled 99.4 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 44 c2x2oA_ not modelled 99.3 15 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 45 c3p0rA_ not modelled 99.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 46 d1sqsa_ not modelled 99.3 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 47 d1rlja_ not modelled 99.3 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 48 c2q62A_ not modelled 99.2 15 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 49 c3f2vA_ not modelled 99.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 50 c3k1yE_ not modelled 99.2 15 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 51 c2hpvA_ not modelled 99.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 52 d2qwxa1 not modelled 99.2 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 53 d1rlia_ not modelled 99.2 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 54 c3n39D_ not modelled 99.1 14 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 55 d1dxqa_ not modelled 99.1 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 56 d1t5ba_ not modelled 99.1 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 57 c2v9cA_ not modelled 99.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 58 c3rpeA_ not modelled 99.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 59 d1qrda_ not modelled 99.1 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 60 d1nni1_ not modelled 99.1 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 61 d1d4aa_ not modelled 99.1 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 62 c2vzhA_ not modelled 99.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 63 d2z98a1 not modelled 99.0 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 64 c2fzvC_ not modelled 99.0 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 65 c3fvwA_ not modelled 98.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 66 d2fzva1 not modelled 98.9 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 67 c2amjD_ not modelled 98.8 12 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 68 c3ha2B_ not modelled 98.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 69 c3eywA_ not modelled 98.0 7 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 70 c2zklA_ not modelled 95.0 13 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 71 c3kklA_ not modelled 94.6 15 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 72 d2a9va1 not modelled 94.4 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 73 d1o1ya_ not modelled 94.1 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 74 c3l7nA_ not modelled 94.1 12 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 75 d1qvwa_ not modelled 93.3 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 76 c1tvmA_ not modelled 93.1 10 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 77 d1k9vf_ not modelled 92.8 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 78 d1t0ba_ not modelled 92.1 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 79 c3czcA_ not modelled 92.0 25 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 80 c3l3bA_ not modelled 91.0 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 81 d1wd7a_ not modelled 90.6 17 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 82 d1ka9h_ not modelled 89.4 28 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 83 c3r74B_ not modelled 88.9 21 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 84 c3nbmA_ not modelled 88.7 13 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 85 c2jjmH_ not modelled 88.4 10 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 86 d1jvna2 not modelled 88.2 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 87 d1rzua_ not modelled 88.2 20 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 88 d1u9ca_ not modelled 88.0 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 89 c2issF_ not modelled 88.0 24 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 90 c2qzsA_ not modelled 87.2 23 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 91 d1jaya_ not modelled 86.9 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 92 c3uk7B_ not modelled 85.5 22 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 93 d2bisa1 not modelled 85.5 29 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 94 c3d54D_ not modelled 85.4 13 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 95 d2gk3a1 not modelled 85.1 28 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like 96 c2iv3B_ not modelled 83.9 14 PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis 97 c2gejA_ not modelled 83.2 20 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 98 c1ks9A_ not modelled 83.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: ketopantoate reductase from escherichia coli 99 c3oh8A_ not modelled 83.0 10 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family); PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91 100 c3c7cB_ not modelled 82.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine) 101 c3l83A_ not modelled 82.5 6 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 102 c3oy2A_ not modelled 82.5 14 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 103 d1wl8a1 not modelled 82.4 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 104 d1rrva_ not modelled 82.3 29 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 105 d1txga2 not modelled 82.1 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 106 c2l2qA_ not modelled 82.1 15 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 107 d2r4qa1 not modelled 82.0 25 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 108 d1iiba_ not modelled 81.8 18 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 109 d1n57a_ not modelled 80.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 110 c3rhtB_ not modelled 80.8 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:(gatase1)-like protein; PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus 111 d1z0sa1 not modelled 80.2 18 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 112 c1z0zC_ not modelled 80.2 18 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 113 d2abwa1 not modelled 80.1 9 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 114 c2pv7B_ not modelled 80.0 13 PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution 115 c3d8tB_ not modelled 80.0 16 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase 116 c3c4vB_ not modelled 80.0 29 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 117 c3eeqB_ not modelled 78.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 118 d1pn3a_ not modelled 78.8 35 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 119 d1u0ta_ not modelled 78.8 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 120 d1p80a1 not modelled 78.5 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0