Email l.a.kelley@imperial.ac.uk Description P0ACF0 Date Thu Jan 5 11:18:02 GMT 2012 Unique Job ID 7b70d68e7de56ef9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2iifA_ 99.9 37 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 2 d1p71a_ 99.9 47 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 3 c3c4iA_ 99.9 42 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 4 d1owfa_ 99.9 37 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 5 d1owfb_ 99.9 34 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 6 c2np2B_ 99.9 32 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 7 d1exea_ 99.9 39 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 8 d1huua_ 99.8 58 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 9 d1mula_ 99.8 95 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 10 d2o97b1 99.6 70 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 11 d1b8za_ 99.6 54 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 12 c2yskA_ 42.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus 13 d1o17a1 42.5 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 14 d1brwa1 41.2 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 15 d1dula_ 41.0 10 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 16 d1z67a1 30.8 21 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 17 d1nria_ 29.2 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 18 c1nriA_ 29.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 19 d1khda1 28.9 0 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d2tpta1 28.7 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 c3mzyA_ not modelled 26.7 14 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 22 c3cvjB_ not modelled 26.6 13 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 23 d1i27a_ not modelled 25.7 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 24 d1z6ra1 not modelled 25.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 25 c1o17A_ not modelled 24.6 17 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 26 d2cp9a1 not modelled 24.5 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 27 d1aipc1 not modelled 23.8 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 28 c2krcA_ not modelled 22.8 14 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 29 d1uoua1 not modelled 21.7 15 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 30 d2o4ta1 not modelled 21.7 13 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 31 d1nh2d1 not modelled 21.0 21 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 32 c2v79B_ not modelled 20.8 13 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 33 c2vn2B_ not modelled 20.4 17 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 34 d1xb2b1 not modelled 19.9 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 35 c3tsuA_ not modelled 18.6 37 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 36 d1hq1a_ not modelled 18.4 12 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 37 d1ee8a1 not modelled 17.4 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 38 d1tdza1 not modelled 16.6 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 39 c1otpA_ not modelled 16.5 10 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 40 d1qzxa2 not modelled 16.5 27 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 41 d1k82a1 not modelled 16.0 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 42 d1vola2 not modelled 15.8 17 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 43 d1ussa_ not modelled 15.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 44 d1qb2a_ not modelled 14.9 16 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 45 c3g2bA_ not modelled 14.8 6 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 46 d2ffha2 not modelled 14.7 12 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 47 c2jqeA_ not modelled 14.3 24 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 48 c1khdD_ not modelled 14.2 0 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 49 d1r2za1 not modelled 13.9 29 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 50 c1l0oC_ not modelled 13.6 24 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 51 d1l0oc_ not modelled 13.6 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 52 d1g8ia_ not modelled 13.6 7 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 53 d1k3xa1 not modelled 13.4 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 54 c3bwgA_ not modelled 13.2 31 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 55 c1tr8A_ not modelled 13.0 21 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 56 d1njra_ not modelled 11.9 21 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 57 c1vquB_ not modelled 11.4 21 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 58 d1nvpd1 not modelled 11.1 17 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 59 d1uxda_ not modelled 11.1 35 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 60 d1smyf2 not modelled 11.0 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 61 d1z05a1 not modelled 11.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 62 c3a4cA_ not modelled 10.4 11 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 63 d1efub3 not modelled 10.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 64 d1v8ga1 not modelled 10.2 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 65 c2kloA_ not modelled 10.0 11 PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain 66 c1brwB_ not modelled 10.0 17 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 67 d1mkma1 not modelled 9.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 68 c2l8nA_ not modelled 9.8 30 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 69 c2dsjA_ not modelled 9.8 23 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 70 d2elca1 not modelled 9.6 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 71 d1uxca_ not modelled 9.6 35 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 72 d1aisb2 not modelled 9.6 22 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 73 c1aipG_ not modelled 9.5 27 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 74 d2bjca1 not modelled 9.4 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 75 c2v3cC_ not modelled 9.4 19 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 76 c3edpB_ not modelled 9.2 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 77 c2kjwA_ not modelled 8.8 14 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 78 d1qpza1 not modelled 8.8 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 79 c2lcvA_ not modelled 8.6 30 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 80 d2j5aa1 not modelled 8.4 26 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 81 c3thgA_ not modelled 8.4 7 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 82 c3kfoA_ not modelled 8.3 14 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup133; PDBTitle: crystal structure of the c-terminal domain from the nuclear pore2 complex component nup133 from saccharomyces cerevisiae 83 d1x92a_ not modelled 8.3 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 84 d1tk9a_ not modelled 8.1 20 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 85 d2hsga1 not modelled 8.0 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 86 d1lcda_ not modelled 8.0 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 87 d1qjha_ not modelled 7.7 14 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 88 c3r3tA_ not modelled 7.6 15 PDB header:rna binding protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: crystal structure of 30s ribosomal protein s from bacillus anthracis 89 d2fq4a1 not modelled 7.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 90 d2i10a1 not modelled 7.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 91 d1u5ta1 not modelled 7.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 92 d1vr3a1 not modelled 7.0 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 93 c1dpuA_ not modelled 6.8 12 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 94 d1dpua_ not modelled 6.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 95 c2bpqB_ not modelled 6.8 19 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 96 c1xb2B_ not modelled 6.7 29 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 97 c2kz3A_ not modelled 6.5 26 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 98 d1x2na1 not modelled 6.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 99 c1rp3G_ not modelled 6.4 18 PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm