Email l.a.kelley@imperial.ac.uk Description P23305 Date Thu Jan 5 11:39:21 GMT 2012 Unique Job ID 78cdd04a10cba690

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3e98B_ 100.0 27 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 2 c3p01C_ 99.0 13 PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 3 d2veaa1 99.0 10 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 4 c3p01A_ 99.0 13 PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 5 c3mmhA_ 98.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate 6 c3ci6B_ 98.9 15 PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase 7 c1vhmB_ 98.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein 8 d1vhma_ 98.9 13 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 9 d2o9ca1 98.9 14 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 10 c3ksiA_ 98.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 11 c3trcA_ 98.8 13 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii 12 d2oola1 98.8 15 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 13 c3k2nB_ 98.7 12 PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls 14 c3o5yA_ 98.6 14 PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a 15 c3hcyB_ 98.6 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 16 c1mc0A_ 98.5 9 PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains 17 c3oovA_ 98.4 12 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287 18 c3e0yA_ 98.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca 19 c1ykdB_ 98.3 13 PDB header:lyase Chain: B: PDB Molecule:adenylate cyclase; PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization 20 c2oolA_ 98.3 11 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 21 d2k2na1 not modelled 98.3 18 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 22 d1f5ma_ not modelled 98.3 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 23 d3c2wa1 not modelled 98.3 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 24 c3eeaB_ not modelled 98.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens 25 c3mf0A_ not modelled 98.2 9 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of pde5a gaf domain (89-518) 26 c2lb5A_ not modelled 98.1 14 PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form 27 c2zmfA_ not modelled 98.1 12 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a 28 c2o9bA_ not modelled 98.1 11 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 29 c2qybA_ not modelled 98.1 14 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein, putative; PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca 30 c2vjwA_ not modelled 98.0 12 PDB header:hydrolase Chain: A: PDB Molecule:gaf family protein; PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis 31 c3ibjB_ not modelled 97.9 9 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: x-ray structure of pde2a 32 c3dbaB_ not modelled 97.9 8 PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c 33 c2w3gA_ not modelled 97.8 7 PDB header:transferase Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss 34 d1mc0a1 not modelled 97.8 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 35 c3c2wB_ not modelled 97.7 8 PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state 36 c2veaA_ not modelled 97.3 10 PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. 37 d1mc0a2 not modelled 97.2 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 38 c2k31A_ not modelled 96.9 7 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific; PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5 39 c2xssB_ not modelled 95.9 7 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase; PDBTitle: crystal structure of gafb from the human phosphodiesterase 5 40 c2w1tB_ not modelled 81.4 13 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 41 c2w1rA_ not modelled 80.1 16 PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt 42 c2gx5B_ not modelled 65.7 14 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 43 d1ubea2 55.0 13 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 44 d1mo6a2 54.2 13 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 45 d1u94a2 52.1 25 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 46 d2v0ea1 50.1 17 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 47 d1xp8a2 not modelled 49.8 19 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 48 c2ckaA_ not modelled 48.3 31 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 49 d2ckaa1 not modelled 48.3 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 50 d2pnwa1 not modelled 47.2 11 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 51 c1pk1B_ not modelled 46.4 9 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 52 c2avxA_ not modelled 45.9 14 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sdia; PDBTitle: solution structure of e coli sdia1-171 53 d1l3la2 not modelled 45.5 12 Fold:Profilin-like Superfamily:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Family:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors 54 c2ckcA_ not modelled 45.0 17 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 55 d2ckca1 not modelled 45.0 17 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 56 d1pk3a1 not modelled 42.4 12 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 57 d2g5da1 not modelled 42.1 21 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 58 d1i27a_ not modelled 40.9 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 59 d2dl6a1 not modelled 37.8 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 60 c2j5uB_ not modelled 36.6 13 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 61 c2wpyA_ not modelled 35.3 27 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with one vxxnxxx motif2 coordinating chloride 62 c3c0rC_ not modelled 35.2 19 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 63 c1dipA_ not modelled 34.3 22 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 64 d2ia7a1 not modelled 33.1 22 Fold:gpW/gp25-like Superfamily:gpW/gp25-like Family:gpW/gp25-like 65 c3hefB_ not modelled 32.8 31 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 66 c3pfyA_ not modelled 32.8 35 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 67 c2k7rA_ not modelled 32.6 33 PDB header:replication Chain: A: PDB Molecule:primosomal protein dnai; PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai 68 c3fkhB_ not modelled 31.9 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution 69 d2ff4a1 not modelled 31.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 70 d2v0fa1 not modelled 29.9 38 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 71 c3eoiB_ not modelled 24.7 46 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:pilm; PDBTitle: crystal structure of putative protein pilm from escherichia coli b7a 72 c1ci6B_ not modelled 24.0 22 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 73 c3iwfA_ not modelled 22.6 3 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 74 d1gxqa_ not modelled 22.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 75 c1swiB_ not modelled 21.9 27 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 76 c1rb4A_ not modelled 21.9 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 77 d2o3fa1 not modelled 21.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:RpiR-like 78 c2o3fC_ not modelled 21.6 25 PDB header:transcription Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh; PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168. 79 c2yxlA_ not modelled 21.0 27 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 80 c1rb6B_ not modelled 21.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 81 c1rb4B_ not modelled 21.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 82 c1rb5C_ not modelled 21.0 27 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 83 c2eanA_ not modelled 20.7 14 PDB header:signaling protein Chain: A: PDB Molecule:connector enhancer of kinase suppressor of ras 2; PDBTitle: solution structure of the n-terminal sam-domain of human2 kiaa0902 protein (connector enhancer of kinase suppressor3 of ras 2) 84 c2uv0G_ not modelled 20.4 15 PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer 85 c1rb5B_ not modelled 20.0 27 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 86 c1rb6A_ not modelled 20.0 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 87 c1rb5A_ not modelled 20.0 27 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a trigonal form 88 c2oqqB_ not modelled 19.9 33 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 89 c3m6wA_ not modelled 18.9 33 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 90 d2o34a1 not modelled 18.2 14 Fold:T-fold Superfamily:ApbE-like Family:DVU1097-like 91 c2wpzA_ not modelled 18.1 23 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 92 c2nytB_ not modelled 17.9 15 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 93 c3cp3A_ not modelled 17.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae 94 c2pywA_ not modelled 17.0 25 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of a. thaliana 5-methylthioribose kinase in complex with adp2 and mtr 95 c2wpzB_ not modelled 16.9 23 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 96 d1pvea_ not modelled 16.8 25 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 97 d2vkva2 not modelled 16.7 9 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 98 c2xh3B_ not modelled 16.6 15 PDB header:hydrolase Chain: B: PDB Molecule:spd1 nuclease; PDBTitle: extracellular nuclease 99 c2nt8A_ not modelled 16.5 17 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri