Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		I	G	V	D	V	T	P	A	M	L	K	V	V	D	A	A	V	E	K	A	Y	K	G	E	R	K	I	S	W	M	E	I	Y	T	G	E	K	S	T	Q	V	Y	G	Q	D	V	W	L	P	A	E	T	L	D	L	I	R	E	Y	R
Secondary structure
SS confidence
Disorder		?	?	?	?															?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	I	K	G	P	L	T	T	P	V	G	G	G	I	R	S	L	N	V	A	L	R	Q	E	L	D	L	Y	I	C	L	R	P	V	R	Y	Y	Q	G	T	P	S	P	V	K	H	P	E	L	T	D	M	V	I	F	R	E	N	S
Secondary structure
SS confidence
Disorder																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	D	I	Y	A	G	I	E	W	K	A	D	S	A	D	A	E	K	V	I	K	F	L	R	E	E	M	G	V	K	K	I	R	F	P	E	H	C	G	I	G	I	K	P	C	S	E	E	G	T	K	R	L	V	R	A	A	I	E	Y
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?								?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Sequence		A	I	A	N	D	R	D	S	V	T	L	V	H	K	G	N	I	M	K	F	T	E	G	A	F	K	D	W	G	Y	Q	L	A	R	E	E	F	G	G	E	L	I
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pb1 chain A Region: 1 - 222 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 100% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 2d4v chain D Region: 1 - 219 Aligned: 219 Modelled: 219 Confidence: 100.0% Identity: 69% PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans Phyre2 PDB 1hqs chain A Region: 1 - 222 Aligned: 219 Modelled: 222 Confidence: 100.0% Identity: 71% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 2e0c chain A Region: 1 - 219 Aligned: 206 Modelled: 219 Confidence: 100.0% Identity: 50% PDB header:oxidoreductase Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution Phyre2 PDB 2d1c chain B Region: 1 - 219 Aligned: 185 Modelled: 196 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 Phyre2 PDB 1tyo chain A Region: 1 - 219 Aligned: 213 Modelled: 219 Confidence: 100.0% Identity: 54% PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp Phyre2 PDB 1w0d chain A Region: 1 - 219 Aligned: 189 Modelled: 200 Confidence: 100.0% Identity: 31% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 3fmx chain X Region: 1 - 219 Aligned: 194 Modelled: 200 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase; PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh Phyre2 PDB 1cm7 chain A Region: 1 - 219 Aligned: 192 Modelled: 200 Confidence: 100.0% Identity: 23% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1v53 chain A domain 1 Region: 1 - 219 Aligned: 191 Modelled: 199 Confidence: 100.0% Identity: 25% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1vlc chain A Region: 1 - 219 Aligned: 188 Modelled: 196 Confidence: 100.0% Identity: 27% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1cnz chain A Region: 1 - 219 Aligned: 192 Modelled: 197 Confidence: 100.0% Identity: 22% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1g2u chain A Region: 1 - 219 Aligned: 188 Modelled: 193 Confidence: 100.0% Identity: 27% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1zor chain B Region: 1 - 221 Aligned: 208 Modelled: 214 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima Phyre2 PDB 3r8w chain C Region: 1 - 219 Aligned: 193 Modelled: 198 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution Phyre2 PDB 1xac chain A Region: 1 - 219 Aligned: 188 Modelled: 196 Confidence: 100.0% Identity: 27% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1wpw chain A Region: 1 - 213 Aligned: 177 Modelled: 190 Confidence: 100.0% Identity: 29% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1x0l chain B Region: 1 - 221 Aligned: 181 Modelled: 197 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus Phyre2 PDB 3u1h chain A Region: 1 - 219 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus Phyre2 PDB 1a05 chain A Region: 1 - 215 Aligned: 189 Modelled: 196 Confidence: 100.0% Identity: 25% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 1 d1pb1a_ 2 c2d4vD_ 3 d1hqsa_ 4 c2e0cA_ 5 c2d1cB_ 6 c1tyoA_ 7 d1w0da_ 8 c3fmxX_ 9 d1cm7a_ 10 d1v53a1 11 d1vlca_ 12 d1cnza_ 13 d1g2ua_ 14 c1zorB_ 15 c3r8wC_ 16 d1xaca_ 17 d1wpwa_ 18 c1x0lB_ 19 c3u1hA_ 20 d1a05a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pb1a_ 100.0 100 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 2 c2d4vD_ 100.0 69 PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans 3 d1hqsa_ 100.0 71 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 4 c2e0cA_ 100.0 50 PDB header:oxidoreductase Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution 5 c2d1cB_ 100.0 39 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 6 c1tyoA_ 100.0 54 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp 7 d1w0da_ 100.0 31 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 8 c3fmxX_ 100.0 23 PDB header:oxidoreductase Chain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase; PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh 9 d1cm7a_ 100.0 23 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 10 d1v53a1 100.0 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 11 d1vlca_ 100.0 27 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 12 d1cnza_ 100.0 22 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 13 d1g2ua_ 100.0 27 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 14 c1zorB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima 15 c3r8wC_ 100.0 22 PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution 16 d1xaca_ 100.0 27 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 17 d1wpwa_ 100.0 29 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 18 c1x0lB_ 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus 19 c3u1hA_ 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus 20 d1a05a_ 100.0 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 21 c2uxqB_ not modelled 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase native; PDBTitle: isocitrate dehydrogenase from the psychrophilic bacterium2 desulfotalea psychrophila: biochemical properties and3 crystal structure analysis 22 c3blxL_ not modelled 100.0 33 PDB header:oxidoreductase Chain: L: PDB Molecule:isocitrate dehydrogenase [nad] subunit 2; PDBTitle: yeast isocitrate dehydrogenase (apo form) 23 c2qfyE_ not modelled 100.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-2 dependent isocitrate dehydrogenase in complex with a-ketoglutarate 24 c3us8A_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021 25 d1lwda_ not modelled 100.0 16 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 26 d1t0la_ not modelled 100.0 12 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 27 c3blxM_ not modelled 100.0 32 PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form) 28 c2iv0A_ not modelled 100.0 62 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 29 d1hioa_ not modelled 20.3 17 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 30 d1f66c_ not modelled 17.1 14 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 31 c1f66C_ not modelled 17.1 14 PDB header:structural protein/dna Chain: C: PDB Molecule:histone h2a.z; PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z 32 d1tzya_ not modelled 16.8 12 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 33 c2f8nK_ not modelled 16.8 13 PDB header:structural protein/dna Chain: K: PDB Molecule:histone h2a type 1; PDBTitle: 2.9 angstrom x-ray structure of hybrid macroh2a nucleosomes 34 d1n1ja_ not modelled 16.5 10 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 35 d2pbea1 not modelled 15.9 5 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:AadK C-terminal domain-like 36 d2ffea1 not modelled 15.9 17 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 37 d2jssa1 not modelled 14.5 14 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 38 d1aoic_ not modelled 13.6 12 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 39 d1n1jb_ not modelled 13.5 11 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 40 d1u35c1 not modelled 13.1 17 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 41 d1q77a_ not modelled 13.0 4 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 42 c2dumD_ not modelled 12.9 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 43 c2p0yA_ not modelled 11.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein lp_0780; PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6 44 c1yy3A_ not modelled 10.7 15 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 45 d1kx3c_ not modelled 10.6 13 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 46 d1a7wa_ not modelled 10.6 13 Fold:Histone-fold Superfamily:Histone-fold Family:Archaeal histone 47 c3hgmD_ not modelled 10.3 4 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 48 c1v8cA_ not modelled 10.2 27 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 49 d1ku5a_ not modelled 10.1 20 Fold:Histone-fold Superfamily:Histone-fold Family:Archaeal histone 50 c3dwmA_ not modelled 9.5 15 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 51 c2jaxA_ not modelled 9.3 32 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein tb31.7; PDBTitle: universal stress protein rv2623 from mycobaterium2 tuberculosis 52 d1zcza1 not modelled 9.1 18 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 53 d1htaa_ not modelled 8.7 13 Fold:Histone-fold Superfamily:Histone-fold Family:Archaeal histone 54 d1k6ka_ not modelled 8.4 19 Fold:Double Clp-N motif Superfamily:Double Clp-N motif Family:Double Clp-N motif 55 d1s32d_ not modelled 8.4 24 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 56 d1i7na1 not modelled 8.3 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Synapsin domain 57 d2bykb1 not modelled 8.1 10 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 58 c2bykB_ not modelled 8.1 10 PDB header:dna-binding protein Chain: B: PDB Molecule:chrac-14; PDBTitle: histone fold heterodimer of the chromatin accessibility2 complex 59 c3qd7X_ not modelled 8.1 22 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 60 d1tzyb_ not modelled 8.0 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 61 c2pbeA_ not modelled 7.7 5 PDB header:transferase Chain: A: PDB Molecule:aminoglycoside 6-adenylyltransferase; PDBTitle: crystal structure of an aminoglycoside 6-adenyltransferase2 from bacillus subtilis 62 d1kx5c_ not modelled 7.7 12 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 d1eqzb_ not modelled 7.5 24 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 64 d2z3va1 not modelled 7.4 28 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 65 c2ppvA_ not modelled 7.1 17 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution 66 c2q7xA_ not modelled 7.0 24 PDB header:transferase Chain: A: PDB Molecule:upf0052 protein sp_1565; PDBTitle: crystal structure of a putative phospho transferase (sp_1565) from2 streptococcus pneumoniae tigr4 at 2.00 a resolution 67 c3dloC_ not modelled 6.9 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 68 d1id3c_ not modelled 6.7 10 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 69 d1kx5d_ not modelled 6.7 24 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 70 d2hzba1 not modelled 6.6 39 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 71 d1jmva_ not modelled 6.6 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 72 c2jssA_ not modelled 6.6 13 PDB header:chaperone/nuclear protein Chain: A: PDB Molecule:chimera of histone h2b.1 and histone h2a.z; PDBTitle: nmr structure of chaperone chz1 complexed with histone2 h2a.z-h2b 73 c2pfsA_ not modelled 6.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 74 d2z8la1 not modelled 6.3 18 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 75 d2huec1 not modelled 6.1 23 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 d1eqza_ not modelled 6.0 12 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 77 d1id3d_ not modelled 5.7 19 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 78 c3idfA_ not modelled 5.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 79 c3fh0A_ not modelled 5.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 80 c1urqA_ not modelled 5.5 10 PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 81 c3ca8B_ not modelled 5.4 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 82 c3fh2A_ not modelled 5.3 4 PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent protease (heat shock protein); PDBTitle: the crystal structure of the probable atp-dependent protease (heat2 shock protein) from corynebacterium glutamicum 83 d2r61a1 not modelled 5.2 20 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 84 c3fpvC_ not modelled 5.1 28 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 85 d1bev1_ not modelled 5.1 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0