Email l.a.kelley@imperial.ac.uk Description P0A8A8 Date Thu Jan 5 11:07:21 GMT 2012 Unique Job ID 76229b761e96e134

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ib8A_ 100.0 32 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 2 d1ib8a2 99.9 37 Fold:Alpha-lytic protease prodomain-like Superfamily:YhbC-like, N-terminal domain Family:YhbC-like, N-terminal domain 3 d1ib8a1 99.4 28 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 4 c1y96C_ 88.7 11 PDB header:rna binding protein Chain: C: PDB Molecule:gem-associated protein 6; PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex 5 c3cw15_ 85.0 22 PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp 6 d1h641_ 83.9 24 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 7 d1th7a1 83.0 13 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 8 d1i8fa_ 80.8 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 9 d1m5q1_ 79.4 37 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 10 d1mgqa_ 77.4 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 11 c3bw1A_ 77.1 29 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3; PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation 12 d1b34a_ 76.3 32 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 13 c1b34A_ 76.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 14 d1jbma_ 76.2 25 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 15 c3swnT_ 75.8 21 PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 16 c3cw1Z_ 74.9 25 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 17 c1n9sH_ 74.9 21 PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212 18 c3swnA_ 74.8 14 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 19 c2fwkB_ 74.3 17 PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5 20 d1ljoa_ 74.2 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 21 d1d3bl_ not modelled 74.1 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 22 c3swnC_ not modelled 73.7 20 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 23 d1n9ra_ not modelled 73.5 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 24 d1d3ba_ not modelled 72.6 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 25 d1n9sc_ not modelled 72.5 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 26 d1biaa2 not modelled 71.6 16 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 27 d1i4k1_ not modelled 71.3 20 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 28 c2ewnA_ not modelled 71.2 19 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 29 c2e70A_ not modelled 70.9 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 30 d1d3bb_ not modelled 69.5 28 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 31 c2kvqG_ not modelled 68.4 30 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 32 c2jvvA_ not modelled 68.4 30 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 33 d1ycya1 not modelled 67.8 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:PF1955-like 34 c3pgwQ_ not modelled 67.2 27 PDB header:splicing/dna/rna Chain: Q: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 35 d1nz9a_ not modelled 66.8 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 36 d2fwka1 not modelled 66.5 17 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 37 c3pgwB_ not modelled 64.3 26 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 38 c2ej9A_ not modelled 61.2 19 PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii 39 c3cw1A_ not modelled 58.8 27 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 40 c2rm4A_ not modelled 56.7 25 PDB header:protein binding Chain: A: PDB Molecule:cg6311-pb; PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3) 41 d1r5pa_ not modelled 52.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 42 c2cghB_ not modelled 52.5 18 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 43 c3cw1D_ not modelled 51.5 14 PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp 44 c2e6zA_ not modelled 47.4 30 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 45 d2pi2e1 not modelled 43.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 46 c2pqaB_ not modelled 42.0 26 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 47 d1qd1a1 not modelled 40.3 17 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 48 c2pt7G_ not modelled 39.2 17 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 49 c2eayB_ not modelled 38.3 18 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 50 d1nppa2 not modelled 36.4 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 51 d1kk8a1 not modelled 35.4 21 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 52 d1h9aa1 not modelled 34.7 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 53 c2vc8A_ not modelled 34.5 24 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3) 54 d1qkia1 not modelled 31.4 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 55 d1u2ma_ not modelled 31.3 13 Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like 56 c2hbpA_ not modelled 29.1 12 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 57 c1tt9B_ not modelled 28.3 17 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 58 d1b34b_ not modelled 26.9 35 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP 59 c1b34B_ not modelled 26.9 35 PDB header:rna binding protein Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain 60 d1wina_ not modelled 25.4 15 Fold:EF-Ts domain-like Superfamily:Band 7/SPFH domain Family:Band 7/SPFH domain 61 d1sg5a1 not modelled 22.4 19 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like 62 c1gshA_ not modelled 22.3 16 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 63 c1h9aA_ not modelled 22.1 18 PDB header:oxidoreductase (choh(d) - nad(p)) Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase; PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp 64 d1ug7a_ not modelled 20.9 10 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 65 c3cw1W_ not modelled 20.5 21 PDB header:splicing Chain: W: PDB Molecule:small nuclear ribonucleoprotein e; PDBTitle: crystal structure of human spliceosomal u1 snrnp 66 c1qkiE_ not modelled 20.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+ 67 c3ic8D_ not modelled 20.0 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a 68 c2zy3A_ not modelled 18.2 13 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 69 d1t4za_ not modelled 17.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 70 d3bypa1 not modelled 17.2 11 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 71 d1kuta_ not modelled 17.1 25 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:SAICAR synthase 72 c2bhlB_ not modelled 16.8 15 PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate 73 c3dexA_ not modelled 16.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 74 c2iruA_ not modelled 16.0 8 PDB header:transferase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the polymerase domain from mycobacterium2 tuberculosis ligase d 75 d1h8la1 not modelled 15.2 20 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 76 c1qd1A_ not modelled 15.1 19 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 77 c1zq1B_ not modelled 15.0 19 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 78 c1bknA_ not modelled 14.9 28 PDB header:dna repair Chain: A: PDB Molecule:mutl; PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl 79 d2bu1a1 not modelled 14.8 26 Fold:RNA bacteriophage capsid protein Superfamily:RNA bacteriophage capsid protein Family:RNA bacteriophage capsid protein 80 d1uwya1 not modelled 14.8 36 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 81 c2gqsA_ not modelled 14.5 21 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide PDBTitle: saicar synthetase complexed with cair-mg2+ and adp 82 c3kreA_ not modelled 14.2 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase; PDBTitle: crystal structure of phosphoribosylaminoimidazole-succinocarboxamide2 synthase from ehrlichia chaffeensis at 1.8a resolution 83 c1m1gB_ not modelled 14.2 22 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 84 c2z02A_ not modelled 14.2 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide PDBTitle: crystal structure of2 phosphoribosylaminoimidazolesuccinocarboxamide synthase3 wit atp from methanocaldococcus jannaschii 85 c2ywvB_ not modelled 13.7 4 PDB header:ligase Chain: B: PDB Molecule:phosphoribosylaminoimidazole succinocarboxamide synthetase; PDBTitle: crystal structure of saicar synthetase from geobacillus kaustophilus 86 c2faoB_ not modelled 13.5 14 PDB header:hydrolase/transferase Chain: B: PDB Molecule:probable atp-dependent dna ligase; PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain 87 c3d0fA_ not modelled 13.4 9 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 88 c2h31A_ not modelled 13.3 18 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 89 c3nuaB_ not modelled 13.3 11 PDB header:ligase Chain: B: PDB Molecule:phosphoribosylaminoimidazole-succinocarboxamide synthase; PDBTitle: crystal structure of phosphoribosylaminoimidazole-succinocarboxamide2 synthase from clostridium perfringens 90 c2kz0A_ not modelled 13.1 9 PDB header:transcription Chain: A: PDB Molecule:bola family protein; PDBTitle: solution structure of a bola protein (ech_0303) from ehrlichia2 chaffeensis. seattle structural genomics center for infectious3 disease target ehcha.10365.a 91 c3qiiA_ not modelled 12.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 92 c3kbqA_ not modelled 12.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 93 c2p0gB_ not modelled 12.3 6 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 94 c2ojlB_ not modelled 12.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 95 c3bfmA_ not modelled 11.9 20 PDB header:unknown function Chain: A: PDB Molecule:biotin protein ligase-like protein of unknown function; PDBTitle: crystal structure of a biotin protein ligase-like protein of unknown2 function (tm1040_0394) from silicibacter sp. tm1040 at 1.70 a3 resolution 96 c2ckkA_ not modelled 11.3 20 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 97 d3bpda1 not modelled 11.3 8 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 98 d1utya_ not modelled 10.9 39 Fold:BTV NS2-like ssRNA-binding domain Superfamily:BTV NS2-like ssRNA-binding domain Family:BTV NS2-like ssRNA-binding domain 99 c1utyA_ not modelled 10.9 39 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 2; PDBTitle: crystal structure of the rna binding domain of bluetongue2 virus non-structural protein 2(ns2)