Secondary structure and disorder prediction

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Sequence		M	Q	P	N	D	I	T	F	F	Q	R	F	Q	D	D	I	L	A	G	R	K	T	I	T	I	R	D	E	S	E	S	H	F	K	T	G	D	V	L	R	V	G	R	F	E	D	D	G	Y	F	C	T	I	E	V	T	A	T	S	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?									?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Sequence		V	T	L	D	T	L	T	E	K	H	A	E	Q	E	N	M	T	L	T	E	L	K	K	V	I	A	D	I	Y	P	G	Q	T	Q	F	Y	V	I	E	F	K	C	L
Secondary structure
SS confidence
Disorder															?	?																												?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1te7 chain A Region: 1 - 103 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 100% Fold: PUA domain-like Superfamily: PUA domain-like Family: yqfB-like Phyre2 PDB 3s9x chain A Region: 11 - 75 Aligned: 64 Modelled: 65 Confidence: 97.0% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 Phyre2 PDB 1t62 chain A Region: 11 - 84 Aligned: 71 Modelled: 74 Confidence: 96.9% Identity: 23% Fold: PUA domain-like Superfamily: PUA domain-like Family: Hypothetical protein EF3133 Phyre2 PDB 3iuw chain A Region: 14 - 62 Aligned: 48 Modelled: 49 Confidence: 95.0% Identity: 23% PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution Phyre2 PDB 1xne chain A Region: 1 - 103 Aligned: 99 Modelled: 103 Confidence: 93.7% Identity: 18% Fold: PUA domain-like Superfamily: PUA domain-like Family: ProFAR isomerase associated domain Phyre2 PDB 1s04 chain A Region: 5 - 90 Aligned: 82 Modelled: 86 Confidence: 87.9% Identity: 22% Fold: PUA domain-like Superfamily: PUA domain-like Family: ProFAR isomerase associated domain Phyre2 PDB 2e6z chain A Region: 29 - 54 Aligned: 26 Modelled: 26 Confidence: 40.7% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 2dbk chain A Region: 27 - 51 Aligned: 25 Modelled: 25 Confidence: 34.0% Identity: 24% PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein Phyre2 PDB 1nxz chain A domain 1 Region: 12 - 62 Aligned: 51 Modelled: 51 Confidence: 33.5% Identity: 14% Fold: PUA domain-like Superfamily: PUA domain-like Family: YggJ N-terminal domain-like Phyre2 PDB 2jw4 chain A Region: 26 - 52 Aligned: 27 Modelled: 27 Confidence: 28.6% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: nmr solution structure of the n-terminal sh3 domain of2 human nckalpha Phyre2 PDB 1wxt chain A Region: 26 - 52 Aligned: 27 Modelled: 27 Confidence: 28.2% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21522; PDBTitle: solution structure of the sh3 domain of human hypothetical2 protein flj21522 Phyre2 PDB 1vhk chain A Region: 8 - 63 Aligned: 55 Modelled: 56 Confidence: 24.6% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 1o5u chain A Region: 16 - 41 Aligned: 26 Modelled: 26 Confidence: 23.9% Identity: 27% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Hypothetical protein TM1112 Phyre2 PDB 2i45 chain C Region: 16 - 60 Aligned: 45 Modelled: 45 Confidence: 23.8% Identity: 9% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis Phyre2 PDB 1wfw chain A Region: 26 - 50 Aligned: 25 Modelled: 25 Confidence: 23.2% Identity: 20% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 1vyv chain A domain 1 Region: 33 - 51 Aligned: 19 Modelled: 19 Confidence: 23.1% Identity: 16% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 2xmf chain A Region: 26 - 51 Aligned: 26 Modelled: 26 Confidence: 22.3% Identity: 19% PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 Phyre2 PDB 2kaf chain A Region: 24 - 85 Aligned: 52 Modelled: 62 Confidence: 22.3% Identity: 31% PDB header:viral protein, rna binding protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: solution structure of the sars-unique domain-c from the2 nonstructural protein 3 (nsp3) of the severe acute3 respiratory syndrome coronavirus Phyre2 PDB 3es4 chain B Region: 16 - 41 Aligned: 26 Modelled: 26 Confidence: 22.1% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution Phyre2 PDB 3bcw chain B Region: 16 - 49 Aligned: 34 Modelled: 34 Confidence: 22.0% Identity: 18% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution Phyre2 1 d1te7a_ 2 c3s9xA_ 3 d1t62a_ 4 c3iuwA_ 5 d1xnea_ 6 d1s04a_ 7 c2e6zA_ 8 c2dbkA_ 9 d1nxza1 10 c2jw4A_ 11 c1wxtA_ 12 c1vhkA_ 13 d1o5ua_ 14 c2i45C_ 15 d1wfwa_ 16 d1vyva1 17 c2xmfA_ 18 c2kafA_ 19 c3es4B_ 20 c3bcwB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1te7a_ 100.0 100 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 2 c3s9xA_ 97.0 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 3 d1t62a_ 96.9 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133 4 c3iuwA_ 95.0 23 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 5 d1xnea_ 93.7 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 6 d1s04a_ 87.9 22 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 7 c2e6zA_ 40.7 27 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 8 c2dbkA_ 34.0 24 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 9 d1nxza1 33.5 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 10 c2jw4A_ 28.6 15 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: nmr solution structure of the n-terminal sh3 domain of2 human nckalpha 11 c1wxtA_ 28.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21522; PDBTitle: solution structure of the sh3 domain of human hypothetical2 protein flj21522 12 c1vhkA_ 24.6 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 13 d1o5ua_ 23.9 27 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 14 c2i45C_ 23.8 9 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 15 d1wfwa_ 23.2 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 16 d1vyva1 23.1 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 17 c2xmfA_ 22.3 19 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 18 c2kafA_ 22.3 31 PDB header:viral protein, rna binding protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: solution structure of the sars-unique domain-c from the2 nonstructural protein 3 (nsp3) of the severe acute3 respiratory syndrome coronavirus 19 c3es4B_ 22.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 20 c3bcwB_ 22.0 18 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 21 c2eyxA_ not modelled 19.8 16 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 22 c2eqmA_ not modelled 19.3 18 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 23 d1j3ta_ not modelled 19.2 15 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 24 d1ep3b1 not modelled 19.2 5 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 25 d2p5zx2 not modelled 19.1 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 26 d1utia_ not modelled 18.1 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 27 d1t3la1 not modelled 17.6 21 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 28 c2ebpA_ not modelled 17.4 19 PDB header:cell adhesion Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain from human sam and sh32 domain containing protein 1 29 c1zx6A_ not modelled 17.4 12 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 30 d1ng2a1 not modelled 17.3 32 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 31 c2kgtA_ not modelled 16.8 35 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase 6; PDBTitle: solution structure of sh3 domain of ptk6 32 c2cudA_ not modelled 16.8 30 PDB header:signaling protein Chain: A: PDB Molecule:src-like-adapter; PDBTitle: solution structure of the sh3 domain of the human src-like2 adopter protein (slap) 33 c3myxA_ not modelled 16.7 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 34 c2ct3A_ not modelled 16.5 36 PDB header:signaling protein Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the sh3 domain of the vinexin protein 35 c2csqA_ not modelled 16.4 32 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:rim binding protein 2; PDBTitle: solution structure of the second sh3 domain of human rim-2 binding protein 2 36 d1t0ha_ not modelled 16.3 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 37 d1wlpb2 not modelled 16.2 31 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 38 d1udla_ not modelled 15.3 23 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 39 d1ov3a1 not modelled 15.2 32 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 40 c1t0jA_ not modelled 15.1 20 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 41 d1ckaa_ not modelled 14.5 32 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 c2dl4A_ not modelled 14.3 8 PDB header:signaling protein Chain: A: PDB Molecule:protein stac; PDBTitle: solution structure of the first sh3 domain of stac protein 43 c2js0A_ not modelled 14.3 24 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: solution structure of second sh3 domain of adaptor nck 44 c2eczA_ not modelled 14.1 19 PDB header:signaling protein Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain of sorbin and sh32 domain-containing protein 1 45 c2krcA_ not modelled 13.9 26 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 46 c3kw2A_ not modelled 13.7 19 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 47 d1jo8a_ not modelled 13.7 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 48 c2ke9A_ not modelled 13.4 29 PDB header:protein binding Chain: A: PDB Molecule:caskin-2; PDBTitle: nmr solution structure of the caskin sh3 domain 49 c1zbe1_ not modelled 13.2 26 PDB header:virus Chain: 1: PDB Molecule:coat protein vp1; PDBTitle: foot-and mouth disease virus serotype a1061 50 d2j01e1 not modelled 13.1 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 51 d1qqp1_ not modelled 13.1 36 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 52 d1wlfa1 not modelled 13.0 10 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 53 c2df6A_ not modelled 13.0 38 PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7; PDBTitle: crystal structure of the sh3 domain of betapix in complex2 with a high affinity peptide from pak2 54 d1ue9a_ not modelled 13.0 8 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 55 c2bzxA_ not modelled 12.9 25 PDB header:sh3 domain Chain: A: PDB Molecule:crk-like protein; PDBTitle: atomic model of crkl-sh3c monomer 56 c1bf5A_ not modelled 12.4 34 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 57 d1sema_ not modelled 12.4 28 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 58 c2jxbA_ not modelled 12.3 11 PDB header:signaling protein complex Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 epsilon chain, PDBTitle: structure of cd3epsilon-nck2 first sh3 domain complex 59 c2cubA_ not modelled 12.1 24 PDB header:signaling protein Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: solution structure of the sh3 domain of the human2 cytoplasmic protein nck1 60 c2krnA_ not modelled 12.1 28 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: high resolution structure of the second sh3 domain of cd2ap 61 c1g5vA_ not modelled 11.9 26 PDB header:translation Chain: A: PDB Molecule:survival motor neuron protein 1; PDBTitle: solution structure of the tudor domain of the human smn2 protein 62 c3cgnA_ not modelled 11.9 26 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 63 d1i07a_ not modelled 11.8 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 64 c2yuoA_ not modelled 11.7 20 PDB header:signaling protein Chain: A: PDB Molecule:run and tbc1 domain containing 3; PDBTitle: solution structure of the sh3 domain of mouse run and tbc12 domain containing 3 65 d1h8ka_ not modelled 11.6 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 66 c2o2oA_ not modelled 11.5 24 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase-binding protein 1; PDBTitle: solution structure of domain b from human cin85 protein 67 c2egcA_ not modelled 11.4 26 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the fifth sh3 domain from human2 kiaa0418 protein 68 d1efna_ not modelled 11.4 12 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 69 d1uhfa_ not modelled 11.4 11 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 d1pwta_ not modelled 11.4 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 71 d1yfua1 not modelled 11.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 72 c2dx1A_ not modelled 11.3 30 PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crystal structure of rhogef protein asef 73 d2pyta1 not modelled 11.1 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 74 c2pqhA_ not modelled 11.0 20 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal 75 c1zlmA_ not modelled 10.9 23 PDB header:signaling protein Chain: A: PDB Molecule:osteoclast stimulating factor 1; PDBTitle: crystal structure of the sh3 domain of human osteoclast2 stimulating factor 76 d2dp9a1 not modelled 10.9 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein TTHA0113 77 c2drmB_ not modelled 10.8 28 PDB header:contractile protein Chain: B: PDB Molecule:acanthamoeba myosin ib; PDBTitle: acanthamoeba myosin i sh3 domain bound to acan125 78 c2egaA_ not modelled 10.7 23 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the first sh3 domain from human2 kiaa0418 protein 79 d1mhna_ not modelled 10.6 17 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 80 c1yn8E_ not modelled 10.6 16 PDB header:unknown function Chain: E: PDB Molecule:nap1-binding protein 2; PDBTitle: sh3 domain of yeast nbp2 81 d1lcka1 not modelled 10.6 15 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 82 d1vyua1 not modelled 10.5 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 83 c1w1fA_ not modelled 10.5 15 PDB header:sh3-domain Chain: A: PDB Molecule:tyrosine-protein kinase lyn; PDBTitle: sh3 domain of human lyn tyrosine kinase 84 d1gcqa_ not modelled 10.4 23 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 85 c1wxbA_ not modelled 10.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:epidermal growth factor receptor pathway PDBTitle: solution structure of the sh3 domain from human epidermal2 growth factor receptor pathway substrate 8-like protein 86 c2l0aA_ not modelled 10.4 24 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 1; PDBTitle: solution nmr structure of signal transducing adapter molecule 1 stam-12 from homo sapiens, northeast structural genomics consortium target3 hr4479e 87 c1x2qA_ not modelled 10.3 23 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 2; PDBTitle: solution structure of the sh3 domain of the signal2 transducing adaptor molecule 2 88 d2gycb1 not modelled 10.3 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 89 c2jmcA_ not modelled 10.2 20 PDB header:signaling protein Chain: A: PDB Molecule:spectrin alpha chain, brain and p41 peptide PDBTitle: chimer between spc-sh3 and p41 90 d1awwa_ not modelled 10.1 8 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 91 d1h5ba_ not modelled 10.1 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 92 c3rebD_ not modelled 10.0 15 PDB header:protein binding Chain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain 93 d1y57a1 not modelled 9.9 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 94 c2oi3A_ not modelled 9.8 15 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: nmr structure analysis of the hematopoetic cell kinase sh32 domain complexed with an artificial high affinity ligand3 (pd1) 95 d2zjrb1 not modelled 9.7 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Ribosomal protein L3 96 c2hdeA_ not modelled 9.6 25 PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap18; PDBTitle: solution structure of human sap18 97 c3h8uA_ not modelled 9.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 98 d1e6ga_ not modelled 9.6 20 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 99 c3nmzD_ not modelled 9.6 32 PDB header:cell adhesion/cell cycle Chain: D: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crytal structure of apc complexed with asef

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0