Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24211
DateThu Jan 5 11:41:16 GMT 2012
Unique Job ID7337bfc9ae0db9b9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1x3za1
Top template information
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
Confidence and coverage
Confidence: 47.4% Coverage: 5%
34 residues ( 5% of your sequence) have been modelled with 47.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSTRLTTLSHTSEGHRVSVHYGYDDKGRLTGERQTVENPETGELLWHHETGHAYNEQGLA
Secondary structure 
SS confidence 
Disorder  ??
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLLEFTRDRLHRETVRSFGSMAGSNAAYKLT
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  STYTPAGQLQSQHLNSLVYDRDYGWNDNGDLVRISGPRQTREYGYSATGRLESVRTLAPD
Secondary structure 
SS confidence 
Disorder 
???
?
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPA
Secondary structure 
SS confidence 
Disorder 
??
?
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  GVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTG
Secondary structure 
SS confidence 
Disorder  ?????
?
????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  WMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSL
Secondary structure 
SS confidence 
Disorder  ??
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  AETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVE
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  PEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPHHLHQPYRLPGQ
Secondary structure 
SS confidence 
Disorder  ???
?
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  QHDEESGLYYNRHRHYDPLQGRYITPDPIGLRGGWNMYQYPLNPIQVIDPMGLDAIENMT
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  SGGLIYAVSGVPGLIAANSITNSAYQFGYDMDAIVGGAHNGAADAMRHCYLMCRMTKTFG
Secondary structure 
SS confidence 
Disorder 
?????
?
?
??
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  STIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGIACGDFSAKCSDACIEKYNTGQLFG
Secondary structure 
SS confidence 
Disorder 
?
?????????????
?
?
????????
???
?
?
Disorder confidence 
 
   .........670.........680..
Sequence  LDGIKADNPIKAKQGSSDASNY
Secondary structure 
SS confidence 
Disorder 
?????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1x3z chain A domain 1

3D model

Region: 495 - 528
Aligned: 34
Modelled: 34
Confidence: 47.4%
Identity: 9%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 3msw chain A

3D model

Region: 20 - 56
Aligned: 37
Modelled: 37
Confidence: 37.2%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution

Phyre2

PDB 2f4m chain A domain 1

3D model

Region: 490 - 528
Aligned: 39
Modelled: 39
Confidence: 36.0%
Identity: 18%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 3esw chain A

3D model

Region: 490 - 528
Aligned: 38
Modelled: 39
Confidence: 29.7%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.

Phyre2

PDB 1j5q chain B

3D model

Region: 475 - 532
Aligned: 50
Modelled: 58
Confidence: 21.8%
Identity: 24%
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.

Phyre2

PDB 2x12 chain A

3D model

Region: 433 - 458
Aligned: 26
Modelled: 26
Confidence: 21.2%
Identity: 27%
PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae

Phyre2

PDB 1pk6 chain C

3D model

Region: 496 - 506
Aligned: 11
Modelled: 11
Confidence: 21.1%
Identity: 27%
Fold: TNF-like
Superfamily: TNF-like
Family: TNF-like

Phyre2

PDB 1ei5 chain A domain 1

3D model

Region: 477 - 495
Aligned: 19
Modelled: 19
Confidence: 19.4%
Identity: 32%
Fold: Streptavidin-like
Superfamily: D-aminopeptidase, middle and C-terminal domains
Family: D-aminopeptidase, middle and C-terminal domains

Phyre2

PDB 1pk6 chain B

3D model

Region: 496 - 506
Aligned: 11
Modelled: 11
Confidence: 18.3%
Identity: 27%
Fold: TNF-like
Superfamily: TNF-like
Family: TNF-like

Phyre2

PDB 2oy7 chain A

3D model

Region: 59 - 213
Aligned: 151
Modelled: 155
Confidence: 17.6%
Identity: 11%
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant

Phyre2

PDB 1bco chain A domain 1

3D model

Region: 487 - 504
Aligned: 18
Modelled: 18
Confidence: 17.5%
Identity: 11%
Fold: mu transposase, C-terminal domain
Superfamily: mu transposase, C-terminal domain
Family: mu transposase, C-terminal domain

Phyre2

PDB 1c3h chain A

3D model

Region: 496 - 508
Aligned: 13
Modelled: 13
Confidence: 17.2%
Identity: 31%
Fold: TNF-like
Superfamily: TNF-like
Family: TNF-like

Phyre2

PDB 1gr3 chain A

3D model

Region: 496 - 506
Aligned: 11
Modelled: 11
Confidence: 14.6%
Identity: 36%
PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer

Phyre2

PDB 1gr3 chain A

3D model

Region: 496 - 506
Aligned: 11
Modelled: 11
Confidence: 14.6%
Identity: 36%
Fold: TNF-like
Superfamily: TNF-like
Family: TNF-like

Phyre2

PDB 3kif chain D

3D model

Region: 503 - 533
Aligned: 25
Modelled: 31
Confidence: 14.0%
Identity: 32%
PDB header:sugar binding protein
Chain: D: PDB Molecule:5-bladed -propeller lectin;
PDBTitle: the crystal structures of two fragments truncated from 5-bladed -2 propeller lectin, tachylectin-2 (lib1-b7-18 and lib2-d2-15)

Phyre2

PDB 2ka3 chain C

3D model

Region: 496 - 508
Aligned: 13
Modelled: 13
Confidence: 12.2%
Identity: 38%
PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain

Phyre2

PDB 7api chain B

3D model

Region: 482 - 499
Aligned: 18
Modelled: 18
Confidence: 11.8%
Identity: 6%
PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism

Phyre2

PDB 2jdq chain D domain 1

3D model

Region: 496 - 525
Aligned: 30
Modelled: 30
Confidence: 11.1%
Identity: 17%
Fold: PB2 C-terminal domain-like
Superfamily: PB2 C-terminal domain-like
Family: PB2 C-terminal domain-like

Phyre2

PDB 1pk6 chain A

3D model

Region: 496 - 508
Aligned: 13
Modelled: 13
Confidence: 11.1%
Identity: 31%
Fold: TNF-like
Superfamily: TNF-like
Family: TNF-like

Phyre2

PDB 2vtw chain F

3D model

Region: 495 - 517
Aligned: 22
Modelled: 23
Confidence: 11.0%
Identity: 27%
PDB header:viral protein
Chain: F: PDB Molecule:fiber protein 2;
PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre

Phyre2
1
d1x3za1
2
c3mswA_
3
d2f4ma1
4
c3eswA_
5
c1j5qB_
6
c2x12A_
7
d1pk6c_
8
d1ei5a1
9
d1pk6b_
10
c2oy7A_
11
d1bcoa1
12
d1c3ha_
13
c1gr3A_
14
d1gr3a_
15
c3kifD_
16
c2ka3C_
17
c7apiB_
18
d2jdqd1
19
d1pk6a_
20
c2vtwF_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1x3za1
47.4 9 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
2c3mswA_
37.2 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
3d2f4ma1
36.0 18 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
4c3eswA_
29.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
5c1j5qB_
21.8 24 PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
6c2x12A_
21.2 27 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae
7d1pk6c_
21.1 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
8d1ei5a1
19.4 32 Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
9d1pk6b_
18.3 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
10c2oy7A_
17.6 11 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
11d1bcoa1
17.5 11 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
12d1c3ha_
17.2 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
13c1gr3A_
14.6 36 PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer
14d1gr3a_
14.6 36 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
15c3kifD_
14.0 32 PDB header:sugar binding protein
Chain: D: PDB Molecule:5-bladed -propeller lectin;
PDBTitle: the crystal structures of two fragments truncated from 5-bladed -2 propeller lectin, tachylectin-2 (lib1-b7-18 and lib2-d2-15)
16c2ka3C_
12.2 38 PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
17c7apiB_
11.8 6 PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism
18d2jdqd1
11.1 17 Fold:PB2 C-terminal domain-like
Superfamily:PB2 C-terminal domain-like
Family:PB2 C-terminal domain-like
19d1pk6a_
11.1 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
20c2vtwF_
11.0 27 PDB header:viral protein
Chain: F: PDB Molecule:fiber protein 2;
PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre
21d1f1sa3
not modelled 10.8 23 Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
22c1jjoE_
not modelled 10.5 22 PDB header:signaling protein
Chain: E: PDB Molecule:neuroserpin;
PDBTitle: crystal structure of mouse neuroserpin (cleaved form)
23d1m3ya2
not modelled 10.4 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Major capsid protein vp54
24d1o91a_
not modelled 10.4 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
25c1o91B_
not modelled 10.4 31 PDB header:collagen
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
26c1m4xC_
not modelled 9.7 33 PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model
27d1w9pa2
not modelled 9.6 18 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
28c1hleB_
not modelled 9.5 18 PDB header:hydrolase inhibitor(serine proteinase)
Chain: B: PDB Molecule:horse leukocyte elastase inhibitor;
PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution
29d1brwa3
not modelled 9.4 23 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
30d2tpta3
not modelled 9.0 19 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
31d1ll7a2
not modelled 8.9 23 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
32c3f02C_
not modelled 8.8 16 PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:neuroserpin;
PDBTitle: cleaved human neuroserpin
33d1ulva3
not modelled 8.8 42 Fold:Immunoglobulin-like beta-sandwich
Superfamily:CBD9-like
Family:Glucodextranase, domain C
34c2qshA_
not modelled 8.7 25 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna repair protein rad4;
PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna
35d1zaka2
not modelled 8.6 33 Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
36c2iqcA_
not modelled 8.2 25 PDB header:protein binding
Chain: A: PDB Molecule:fanconi anemia group f protein;
PDBTitle: crystal structure of human fancf protein that functions in2 the assembly of a dna damage signaling complex
37c3mmlD_
not modelled 8.1 21 PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
38c3rduA_
not modelled 8.1 18 PDB header:biotin binding protein
Chain: A: PDB Molecule:streptavidin;
PDBTitle: crystal structure of r7-2 streptavidin complexed with peg
39c2h4qB_
not modelled 8.0 18 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:heterochromatin-associated protein ment;
PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation
40d1zunb2
not modelled 7.8 25 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
41c1dfcB_
not modelled 7.7 16 PDB header:structural protein
Chain: B: PDB Molecule:fascin;
PDBTitle: crystal structure of human fascin, an actin-crosslinking protein
42c9paiB_
not modelled 7.6 12 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365-
PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1
43c1wwtA_
not modelled 7.5 17 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
44d2ax3a2
not modelled 7.3 18 Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
45d1n7oa2
not modelled 7.3 16 Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
46c3kzsD_
not modelled 7.1 13 PDB header:hydrolase
Chain: D: PDB Molecule:glycosyl hydrolase family 5;
PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
47c2rivB_
not modelled 7.0 6 PDB header:signaling protein
Chain: B: PDB Molecule:thyroxine-binding globulin;
PDBTitle: crystal structure of the reactive loop cleaved human thyroxine binding2 globulin
48d1azpa_
not modelled 6.9 25 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
49d1k8wa3
not modelled 6.8 27 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
50d1gxma_
not modelled 6.8 33 Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
51d1vpra1
not modelled 6.8 60 Fold:Lipocalins
Superfamily:Lipocalins
Family:Dinoflagellate luciferase repeat
52c2l92A_
not modelled 6.7 25 PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
53d1gkpa1
not modelled 6.5 15 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase)
54c2nqoB_
not modelled 6.4 12 PDB header:transferase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase
55c2ksnA_
not modelled 6.3 22 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
56c1pgsA_
not modelled 6.3 63 PDB header:endoglycosidase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)
PDBTitle: the three-dimensional structure of pngase f, a2 glycosylasparaginase from flavobacterium meningosepticum
57d1w07a2
not modelled 5.9 13 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
58c2uywA_
not modelled 5.8 18 PDB header:glycoprotein
Chain: A: PDB Molecule:xenavidin;
PDBTitle: crystal structure of xenavidin
59c3iyoA_
not modelled 5.7 15 PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: cryo-em model of virion-sized hev virion-sized capsid
60c2dafA_
not modelled 5.7 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flj35834 protein;
PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834
61c2yh5A_
not modelled 5.7 3 PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
62c2elpA_
not modelled 5.6 26 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
63c3nqhA_
not modelled 5.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution
64c3cw4A_
not modelled 5.5 17 PDB header:transferase
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: large c-terminal domain of influenza a virus rna-dependent polymerase2 pb2
65d2rh3a1
not modelled 5.5 40 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VirC2-like
66d1s6la1
not modelled 5.4 44 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MerB N-terminal domain-like
67d1stma_
not modelled 5.4 38 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Satellite viruses
Family:Satellite viruses
68d1z84a1
not modelled 5.3 33 Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
69d1goia3
not modelled 5.2 27 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
70c1e0aB_
not modelled 5.2 15 PDB header:signalling protein
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
71c3fm2A_
not modelled 5.1 9 PDB header:heme-binding protein
Chain: A: PDB Molecule:uncharacterized protein, distantly related to a heme
PDBTitle: crystal structure of a putative heme-binding protein (ava_4353) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
72d2ddha2
not modelled 5.1 17 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
73c3ew2A_
not modelled 5.1 14 PDB header:unknown function
Chain: A: PDB Molecule:rhizavidin;
PDBTitle: crystal structure of rhizavidin-biotin complex
74c2c1sA_
not modelled 5.1 9 PDB header:biotin binding protein
Chain: A: PDB Molecule:biotin binding protein a;
PDBTitle: x-ray structure of biotin binding protein from chicken
75d1es0a2
not modelled 5.0 29 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0