Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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.

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60

Sequence

M

A

Q

V

I

N

T

N

S

L

S

L

I

T

Q

N

N

I

N

K

N

Q

S

A

L

S

S

S

I

E

R

L

S

S

G

L

R

I

N

S

A

K

D

D

A

A

G

Q

A

I

A

N

R

F

T

S

N

I

K

G

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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.

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120

Sequence

L

T

Q

A

A

R

N

A

N

D

G

I

S

V

A

Q

T

T

E

G

A

L

S

E

I

N

N

N

L

Q

R

V

R

E

L

T

V

Q

A

T

T

G

T

N

S

E

S

D

L

S

S

I

Q

D

E

I

K

S

R

L

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

Disorder confidence

.

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130

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140

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150

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160

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170

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.

.

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.

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.

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.

180

Sequence

D

E

I

D

R

V

S

G

Q

T

Q

F

N

G

V

N

V

L

A

K

N

G

S

M

K

I

Q

V

G

A

N

D

N

Q

T

I

T

I

D

L

K

Q

I

D

A

K

T

L

G

L

D

G

F

S

V

K

N

N

D

T

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

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?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

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190

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200

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210

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220

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.

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230

.

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.

.

.

.

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240

Sequence

V

T

T

S

A

P

V

T

A

F

G

A

T

T

T

N

N

I

K

L

T

G

I

T

L

S

T

E

A

A

T

D

T

G

G

T

N

P

A

S

I

E

G

V

Y

T

D

N

G

N

D

Y

Y

A

K

I

T

G

G

D

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

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?

?

?

?

?

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?

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?

?

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?

?

?

Disorder confidence

.

.

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250

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.

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260

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270

.

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280

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.

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.

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.

290

.

.

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.

.

.

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300

Sequence

N

D

G

K

Y

Y

A

V

T

V

A

N

D

G

T

V

T

M

A

T

G

A

T

A

N

A

T

V

T

D

A

N

T

T

K

A

T

T

I

T

S

G

G

T

P

V

Q

I

D

N

T

A

G

S

A

T

A

N

L

G

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

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?

?

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?

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?

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?

?

?

?

?

?

?

?

Disorder confidence

.

.

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.

.

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310

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.

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.

320

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330

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340

.

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350

.

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.

.

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360

Sequence

A

V

S

L

V

K

L

Q

D

S

K

G

N

D

T

D

T

Y

A

L

K

D

T

N

G

N

L

Y

A

A

D

V

N

E

T

T

G

A

V

S

V

K

T

I

T

Y

T

D

S

S

G

A

A

S

S

P

T

A

V

K

Secondary structure

SS confidence

Disorder

?

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?

?

Disorder confidence

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370

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380

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390

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400

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410

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420

Sequence

L

G

G

D

D

G

K

T

E

V

V

D

I

D

G

K

T

Y

D

S

A

D

L

N

G

G

N

L

Q

T

G

L

T

A

G

G

E

A

L

T

A

V

A

N

G

K

T

T

D

P

L

K

A

L

D

D

A

I

A

S

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

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?

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?

?

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?

Disorder confidence

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430

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440

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450

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460

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470

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480

Sequence

V

D

K

F

R

S

S

L

G

A

V

Q

N

R

L

D

S

A

V

T

N

L

N

N

T

T

T

N

L

S

E

A

Q

S

R

I

Q

D

A

D

Y

A

T

E

V

S

N

M

S

K

A

Q

I

I

Q

Q

A

G

N

S

Secondary structure

SS confidence

Disorder

?

?

Disorder confidence

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.

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490

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.

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.

Sequence

V

L

A

K

A

N

Q

V

P

Q

Q

V

L

S

L

L

Q

G

Secondary structure

SS confidence

Disorder

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ucu chain A Region: 2 - 497 Aligned: 494 Modelled: 496 Confidence: 100.0% Identity: 45% Fold: Phase 1 flagellin Superfamily: Phase 1 flagellin Family: Phase 1 flagellin Phyre2 PDB 3k8v chain B Region: 46 - 479 Aligned: 320 Modelled: 320 Confidence: 100.0% Identity: 39% PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 Phyre2 PDB 1io1 chain A Region: 58 - 453 Aligned: 394 Modelled: 396 Confidence: 100.0% Identity: 37% Fold: Phase 1 flagellin Superfamily: Phase 1 flagellin Family: Phase 1 flagellin Phyre2 PDB 3k8w chain A Region: 44 - 453 Aligned: 296 Modelled: 296 Confidence: 100.0% Identity: 36% PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 Phyre2 PDB 2zbi chain B Region: 63 - 442 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 33% PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin Phyre2 PDB 2d4x chain A Region: 53 - 439 Aligned: 211 Modelled: 211 Confidence: 100.0% Identity: 17% PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 3; PDBTitle: crystal structure of a 26k fragment of hap3 (flgl) Phyre2 PDB 3pwx chain B Region: 44 - 456 Aligned: 194 Modelled: 195 Confidence: 100.0% Identity: 18% PDB header:structural protein Chain: B: PDB Molecule:putative flagellar hook-associated protein; PDBTitle: structure of putative flagellar hook-associated protein from vibrio2 parahaemolyticus Phyre2 PDB 1ory chain B Region: 458 - 497 Aligned: 40 Modelled: 39 Confidence: 99.4% Identity: 45% PDB header:chaperone Chain: B: PDB Molecule:flagellin; PDBTitle: flagellar export chaperone in complex with its cognate binding partner Phyre2 PDB 3a69 chain A Region: 459 - 495 Aligned: 37 Modelled: 37 Confidence: 90.7% Identity: 22% PDB header:motor protein Chain: A: PDB Molecule:flagellar hook protein flge; PDBTitle: atomic model of the bacterial flagellar hook based on2 docking an x-ray derived structure and terminal two alpha-3 helices into an 7.1 angstrom resolution cryoem map Phyre2 PDB 3k1h chain A Region: 66 - 139 Aligned: 58 Modelled: 74 Confidence: 64.5% Identity: 19% PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of hp1076 from h.pylori Phyre2 PDB 3hfe chain C Region: 428 - 450 Aligned: 23 Modelled: 23 Confidence: 29.8% Identity: 30% PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail Phyre2 PDB 1dt9 chain A domain 3 Region: 84 - 140 Aligned: 55 Modelled: 57 Confidence: 29.1% Identity: 16% Fold: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Phyre2 PDB 3bj4 chain B Region: 428 - 456 Aligned: 29 Modelled: 29 Confidence: 28.1% Identity: 24% PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction Phyre2 PDB 256b chain A Region: 82 - 126 Aligned: 45 Modelled: 45 Confidence: 21.5% Identity: 13% Fold: Four-helical up-and-down bundle Superfamily: Cytochromes Family: Cytochrome b562 Phyre2 PDB 3c6v chain B Region: 102 - 120 Aligned: 19 Modelled: 19 Confidence: 17.3% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130; PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus Phyre2 PDB 2jdi chain G domain 1 Region: 421 - 468 Aligned: 48 Modelled: 48 Confidence: 16.4% Identity: 19% Fold: Pyruvate kinase C-terminal domain-like Superfamily: ATP synthase (F1-ATPase), gamma subunit Family: ATP synthase (F1-ATPase), gamma subunit Phyre2 PDB 3r47 chain J Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 15.1% Identity: 25% PDB header:de novo protein Chain: J: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 Phyre2 PDB 3r47 chain I Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 15.1% Identity: 25% PDB header:de novo protein Chain: I: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 Phyre2 PDB 3r47 chain B Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 15.1% Identity: 25% PDB header:de novo protein Chain: B: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 Phyre2 PDB 2w6j chain G Region: 421 - 468 Aligned: 48 Modelled: 48 Confidence: 14.3% Identity: 19% PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. Phyre2 1 d1ucua_ 2 c3k8vB_ 3 d1io1a_ 4 c3k8wA_ 5 c2zbiB_ 6 c2d4xA_ 7 c3pwxB_ 8 c1oryB_ 9 c3a69A_ 10 c3k1hA_ 11 c3hfeC_ 12 d1dt9a3 13 c3bj4B_ 14 d256ba_ 15 c3c6vB_ 16 d2jdig1 17 c3r47J_ 18 c3r47I_ 19 c3r47B_ 20 c2w6jG_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ucua_ 100.0 45 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 2 c3k8vB_ 100.0 39 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 3 d1io1a_ 100.0 37 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 4 c3k8wA_ 100.0 36 PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 5 c2zbiB_ 100.0 33 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin 6 c2d4xA_ 100.0 17 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 3; PDBTitle: crystal structure of a 26k fragment of hap3 (flgl) 7 c3pwxB_ 100.0 18 PDB header:structural protein Chain: B: PDB Molecule:putative flagellar hook-associated protein; PDBTitle: structure of putative flagellar hook-associated protein from vibrio2 parahaemolyticus 8 c1oryB_ 99.4 45 PDB header:chaperone Chain: B: PDB Molecule:flagellin; PDBTitle: flagellar export chaperone in complex with its cognate binding partner 9 c3a69A_ 90.7 22 PDB header:motor protein Chain: A: PDB Molecule:flagellar hook protein flge; PDBTitle: atomic model of the bacterial flagellar hook based on2 docking an x-ray derived structure and terminal two alpha-3 helices into an 7.1 angstrom resolution cryoem map 10 c3k1hA_ 64.5 19 PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of hp1076 from h.pylori 11 c3hfeC_ 29.8 30 PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail 12 d1dt9a3 29.1 16 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 13 c3bj4B_ 28.1 24 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 14 d256ba_ 21.5 13 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome b562 15 c3c6vB_ 17.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130; PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus 16 d2jdig1 16.4 19 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 17 c3r47J_ 15.1 25 PDB header:de novo protein Chain: J: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 18 c3r47I_ 15.1 25 PDB header:de novo protein Chain: I: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 19 c3r47B_ 15.1 25 PDB header:de novo protein Chain: B: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 20 c2w6jG_ 14.3 19 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 21 c3r47F_ not modelled 14.1 25 PDB header:de novo protein Chain: F: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 22 c3r47C_ not modelled 14.1 25 PDB header:de novo protein Chain: C: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 23 c3r47L_ not modelled 14.1 25 PDB header:de novo protein Chain: L: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 24 c3r47M_ not modelled 14.1 25 PDB header:de novo protein Chain: M: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 25 c3r47H_ not modelled 13.5 25 PDB header:de novo protein Chain: H: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 26 c3r47K_ not modelled 13.5 25 PDB header:de novo protein Chain: K: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 27 c3r48F_ not modelled 13.5 25 PDB header:de novo protein Chain: F: PDB Molecule:coiled coil helix w22-l24h; PDBTitle: crystal structure of a hetero-hexamer coiled coil 28 c3r47A_ not modelled 13.4 25 PDB header:de novo protein Chain: A: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 29 c3r47E_ not modelled 13.4 25 PDB header:de novo protein Chain: E: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 30 c3r47G_ not modelled 13.4 25 PDB header:de novo protein Chain: G: PDB Molecule:coiled coil helix l24h; PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24 31 c3r46G_ not modelled 13.3 25 PDB header:de novo protein Chain: G: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 32 c3r46B_ not modelled 13.3 25 PDB header:de novo protein Chain: B: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 33 c3r46A_ not modelled 13.3 25 PDB header:de novo protein Chain: A: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 34 c3r46E_ not modelled 13.3 25 PDB header:de novo protein Chain: E: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 35 c3r46F_ not modelled 13.3 25 PDB header:de novo protein Chain: F: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 36 c3r46C_ not modelled 13.3 25 PDB header:de novo protein Chain: C: PDB Molecule:coiled coil helix l24d; PDBTitle: crystal structure of a parallel 6-helix coiled coil cc-hex-d24 37 c3at7B_ not modelled 13.1 17 PDB header:structural protein Chain: B: PDB Molecule:alginate-binding flagellin; PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7 38 c2oszA_ not modelled 12.8 15 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 39 c3r48A_ not modelled 12.7 25 PDB header:de novo protein Chain: A: PDB Molecule:coiled coil helix w22-l24h; PDBTitle: crystal structure of a hetero-hexamer coiled coil 40 c3r48G_ not modelled 12.7 25 PDB header:de novo protein Chain: G: PDB Molecule:coiled coil helix w22-l24h; PDBTitle: crystal structure of a hetero-hexamer coiled coil 41 c3r3kC_ not modelled 12.7 25 PDB header:de novo protein Chain: C: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 42 c3r3kB_ not modelled 12.7 25 PDB header:de novo protein Chain: B: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 43 c3r3kA_ not modelled 12.7 25 PDB header:de novo protein Chain: A: PDB Molecule:cchex-phi22 helix; PDBTitle: crystal structure of a parallel 6-helix coiled coil 44 c3fksY_ not modelled 11.6 19 PDB header:hydrolase Chain: Y: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: yeast f1 atpase in the absence of bound nucleotides 45 c2xokG_ not modelled 10.4 19 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 46 c2flzC_ not modelled 9.3 8 PDB header:hydrolase Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase; PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site 47 c3e20C_ not modelled 9.1 16 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 48 d2g0ua1 not modelled 8.4 16 Fold:Long alpha-hairpin Superfamily:MxiH-like Family:MxiH-like 49 c3fyqA_ not modelled 8.2 14 PDB header:cell adhesion Chain: A: PDB Molecule:cg6831-pa (talin); PDBTitle: structure of drosophila melanogaster talin ibs2 domain2 (residues 1981-2168) 50 c1junB_ not modelled 7.9 19 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 51 c3oaaO_ not modelled 6.8 17 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 52 d1vcsa1 not modelled 6.6 16 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 53 d2g3qa1 not modelled 6.5 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 54 c3d5cX_ not modelled 6.0 10 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 55 c2d4yA_ not modelled 6.0 22 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 56 c2k6sB_ not modelled 5.8 21 PDB header:protein transport Chain: B: PDB Molecule:rab11fip2 protein; PDBTitle: structure of rab11-fip2 c-terminal coiled-coil domain 57 c3ls1A_ not modelled 5.7 12 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 58 d1sgga_ not modelled 5.6 14 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 59 d1hkxa_ not modelled 5.5 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 60 c3pzdB_ not modelled 5.4 13 PDB header:motor protein/apoptosis Chain: B: PDB Molecule:netrin receptor dcc; PDBTitle: structure of the myosin x myth4-ferm/dcc complex 61 c2v8sV_ not modelled 5.3 8 PDB header:protein transport Chain: V: PDB Molecule:vesicle transport through interaction with PDBTitle: vti1b habc domain - epsinr enth domain complex 62 d1b0xa_ not modelled 5.0 8 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0