Email l.a.kelley@imperial.ac.uk Description P31130 Date Thu Jan 5 11:47:14 GMT 2012 Unique Job ID 6da7779d50a3a894

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nnxa_ 100.0 35 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 2 d1b8aa1 96.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 3 d1l0wa1 96.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 4 c1b8aB_ 96.1 14 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 5 c1wydB_ 96.1 19 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 6 d2pi2a1 96.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 7 d1n9wa1 95.8 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 8 c2pi2A_ 95.4 16 PDB header:replication, dna binding protein Chain: A: PDB Molecule:replication protein a 32 kda subunit; PDBTitle: full-length replication protein a subunits rpa14 and rpa32 9 c3mxnB_ 95.3 19 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 10 d1c0aa1 95.2 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 11 c3kf6A_ 95.0 13 PDB header:structural protein Chain: A: PDB Molecule:protein stn1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 12 c3i7fA_ 94.7 15 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 13 c1eqrC_ 94.6 22 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 14 c3bjuB_ 93.6 15 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 15 c3m4qA_ 93.5 22 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 16 c1x55A_ 93.4 21 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 17 c3e9hB_ 93.4 16 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 18 d1eova1 93.0 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 19 c1efwA_ 91.3 19 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 20 c3e0eA_ 91.0 14 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 21 d1bbua1 not modelled 90.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 22 d1e1oa1 not modelled 90.9 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 23 c1n9wA_ not modelled 90.5 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 24 d2oq0a1 not modelled 90.3 16 Fold:OB-fold Superfamily:HIN-2000 domain-like Family:HIN-200/IF120x domain 25 c2xgtB_ not modelled 89.1 17 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 26 c1e22A_ not modelled 86.4 20 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 27 c3dm3A_ not modelled 86.3 19 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 28 d1gm5a2 not modelled 85.1 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 29 c3b6yB_ not modelled 83.3 16 PDB header:protein binding Chain: B: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the second hin-200 domain of interferon-inducible2 protein 16 30 c3kf8C_ not modelled 83.2 16 PDB header:structural protein Chain: C: PDB Molecule:protein stn1; PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex 31 d1krta_ not modelled 80.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain 32 d1sr3a_ not modelled 77.0 13 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 33 c1asyA_ not modelled 72.0 14 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 34 c3e0jG_ not modelled 70.5 16 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 35 c2k75A_ not modelled 68.6 14 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ta0387; PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b. 36 c3hbcA_ not modelled 63.3 15 PDB header:hydrolase Chain: A: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of choloylglycine hydrolase from bacteroides2 thetaiotaomicron vpi 37 c2oq0D_ not modelled 62.7 15 PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16 38 d1t9ha1 not modelled 49.6 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 c1gm5A_ not modelled 46.1 8 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 40 d1j6qa_ not modelled 44.4 21 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 41 c1j6qA_ not modelled 44.4 21 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme 42 c2hezB_ not modelled 38.2 24 PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase 43 d1cz5a1 not modelled 36.2 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 44 c2kenA_ not modelled 35.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a. 45 c3cp0A_ not modelled 35.5 8 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 46 d2pi2e1 not modelled 34.3 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 47 d1jt8a_ not modelled 31.8 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 c3obyB_ not modelled 31.5 16 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 49 c3ka5A_ not modelled 31.2 32 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 50 d2vgna1 not modelled 27.0 13 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 51 d2cs7a1 not modelled 26.9 13 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 52 c2bx6A_ not modelled 26.6 21 PDB header:transduction protein Chain: A: PDB Molecule:xrp2 protein; PDBTitle: crystal structure of the human retinitis pigmentosa2 protein 2 (rp2) 53 c2k5hA_ not modelled 26.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 54 d2pvaa_ not modelled 25.5 35 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase 55 c3k2tA_ not modelled 23.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 56 d1qcsa1 not modelled 23.9 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 57 d2heqa1 not modelled 23.8 30 Fold:SH3-like barrel Superfamily:YorP-like Family:YorP-like 58 c2pqaB_ not modelled 23.8 11 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 59 d1u0la1 not modelled 22.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c2bjgB_ not modelled 22.7 24 PDB header:hydrolase Chain: B: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of conjugated bile acid hydrolase from2 clostridium perfringens in complex with reaction products3 taurine and deoxycholate 61 c2oqkA_ not modelled 22.5 17 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 62 d2exda1 not modelled 22.3 10 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 63 c3h43F_ not modelled 21.8 19 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 64 c2vgmA_ not modelled 21.7 9 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 65 c1cz5A_ not modelled 21.3 10 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 66 d2do3a1 not modelled 20.7 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 67 d2cu3a1 not modelled 20.5 5 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 68 c2k50A_ not modelled 19.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 69 c2kl0A_ not modelled 19.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 70 d1tygb_ not modelled 18.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 71 c3cl5A_ not modelled 18.6 38 PDB header:hydrolase Chain: A: PDB Molecule:hemagglutinin-esterase; PDBTitle: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-2 diacetyl sialic acid 72 d1hr0w_ not modelled 18.3 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d1vr3a1 not modelled 18.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 74 c1tygG_ not modelled 17.8 21 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 75 c2wg6L_ not modelled 17.7 17 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 76 d1qkia2 not modelled 16.6 13 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 77 c3e0dA_ not modelled 15.9 25 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 78 c2oqcB_ not modelled 15.5 18 PDB header:hydrolase Chain: B: PDB Molecule:penicillin v acylase; PDBTitle: crystal structure of penicillin v acylase from bacillus subtilis 79 c3cwiA_ not modelled 15.4 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 80 d1h9aa2 not modelled 15.3 7 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 81 d1t44g_ not modelled 14.9 24 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 82 d1o7ia_ not modelled 14.7 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 83 d1zud21 not modelled 13.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 84 c1h9aA_ not modelled 13.0 7 PDB header:oxidoreductase (choh(d) - nad(p)) Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase; PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp 85 d1ytfc_ not modelled 12.9 16 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 86 d1v1qa_ not modelled 12.9 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 87 c3i4oA_ not modelled 12.6 8 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 88 c2yk5A_ not modelled 12.5 15 PDB header:transferase Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3- PDBTitle: structure of neisseria los-specific sialyltransferase (nst),2 in complex with cmp. 89 d1ah9a_ not modelled 12.2 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 c2bhlB_ not modelled 12.0 13 PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate 91 d1nvpc_ not modelled 11.9 21 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 92 c1nvpC_ not modelled 11.9 21 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 93 c3f6hA_ not modelled 11.7 16 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 94 d1umua_ not modelled 11.4 3 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 95 d1nh2c_ not modelled 11.2 16 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 96 c1nh2C_ not modelled 11.2 16 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 97 c1qkiE_ not modelled 11.1 13 PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+ 98 d1g4ma2 not modelled 11.0 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arrestin/Vps26-like 99 c2pjhB_ not modelled 10.9 15 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex