Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	P	T	I	I	I	N	D	L	D	A	E	R	I	D	I	L	L	E	Q	P	A	Y	A	G	L	P	I	A	D	A	L	N	A	E	L	D	R	A	Q	M	C	S	P	E	E	M	P	H	D	V	V	T	M	N	S	R	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?																	?	?	?	?	?	?	?	?																?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	F	R	N	L	S	D	G	E	V	R	V	R	T	L	V	Y	P	A	K	M	T	D	S	N	T	Q	L	S	V	M	A	P	V	G	A	A	L	L	G	L	R	V	G	D	S	I	H	W	E	L	P	G	G	V	A	T	H	L	E
Secondary structure
SS confidence
Disorder																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Sequence		V	L	E	L	E	Y	Q	P	E	A	A	G	D	Y	L	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bmb chain B Region: 2 - 136 Aligned: 135 Modelled: 135 Confidence: 100.0% Identity: 100% PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein Phyre2 PDB 2pn0 chain D Region: 3 - 126 Aligned: 120 Modelled: 124 Confidence: 100.0% Identity: 48% PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea Phyre2 PDB 2p4v chain A Region: 1 - 126 Aligned: 122 Modelled: 126 Confidence: 100.0% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution Phyre2 PDB 1grj chain A Region: 5 - 126 Aligned: 115 Modelled: 122 Confidence: 100.0% Identity: 23% PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli Phyre2 PDB 2etn chain A Region: 5 - 125 Aligned: 118 Modelled: 121 Confidence: 99.9% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 Phyre2 PDB 2f23 chain A domain 2 Region: 50 - 125 Aligned: 75 Modelled: 76 Confidence: 99.9% Identity: 31% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 2etn chain A domain 2 Region: 50 - 124 Aligned: 74 Modelled: 75 Confidence: 99.9% Identity: 30% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 1grj chain A domain 2 Region: 49 - 126 Aligned: 71 Modelled: 78 Confidence: 99.9% Identity: 23% Fold: FKBP-like Superfamily: FKBP-like Family: GreA transcript cleavage factor, C-terminal domain Phyre2 PDB 3gty chain X Region: 28 - 122 Aligned: 86 Modelled: 95 Confidence: 92.1% Identity: 16% PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone Phyre2 PDB 1krh chain A domain 1 Region: 40 - 115 Aligned: 76 Modelled: 76 Confidence: 91.0% Identity: 13% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1fdr chain A domain 1 Region: 40 - 115 Aligned: 75 Modelled: 76 Confidence: 84.7% Identity: 15% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1grj chain A domain 1 Region: 5 - 48 Aligned: 44 Modelled: 44 Confidence: 83.4% Identity: 27% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2cnd chain A domain 1 Region: 41 - 115 Aligned: 72 Modelled: 75 Confidence: 78.8% Identity: 21% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1t11 chain A domain 3 Region: 28 - 121 Aligned: 86 Modelled: 94 Confidence: 78.8% Identity: 12% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1gvh chain A domain 2 Region: 41 - 115 Aligned: 75 Modelled: 75 Confidence: 78.5% Identity: 12% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 1w26 chain A domain 3 Region: 28 - 112 Aligned: 75 Modelled: 85 Confidence: 75.6% Identity: 11% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1w26 chain B Region: 1 - 122 Aligned: 100 Modelled: 99 Confidence: 75.5% Identity: 15% PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Phyre2 PDB 1a8p chain A domain 1 Region: 38 - 115 Aligned: 78 Modelled: 77 Confidence: 72.6% Identity: 18% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Ferredoxin reductase FAD-binding domain-like Phyre2 PDB 2f23 chain A domain 1 Region: 5 - 45 Aligned: 41 Modelled: 41 Confidence: 72.5% Identity: 27% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 2l55 chain A Region: 98 - 133 Aligned: 36 Modelled: 36 Confidence: 70.1% Identity: 19% PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans Phyre2 1 c3bmbB_ 2 c2pn0D_ 3 c2p4vA_ 4 c1grjA_ 5 c2etnA_ 6 d2f23a2 7 d2etna2 8 d1grja2 9 c3gtyX_ 10 d1krha1 11 d1fdra1 12 d1grja1 13 d2cnda1 14 d1t11a3 15 d1gvha2 16 d1w26a3 17 c1w26B_ 18 d1a8pa1 19 d2f23a1 20 c2l55A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bmbB_ 100.0 100 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 2 c2pn0D_ 100.0 48 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 3 c2p4vA_ 100.0 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 4 c1grjA_ 100.0 23 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 5 c2etnA_ 99.9 27 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 6 d2f23a2 99.9 31 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 7 d2etna2 99.9 30 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 8 d1grja2 99.9 23 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 9 c3gtyX_ 92.1 16 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 10 d1krha1 91.0 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 11 d1fdra1 84.7 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 12 d1grja1 83.4 27 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 13 d2cnda1 78.8 21 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 14 d1t11a3 78.8 12 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 15 d1gvha2 78.5 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 16 d1w26a3 75.6 11 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 17 c1w26B_ 75.5 15 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 18 d1a8pa1 72.6 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 19 d2f23a1 72.5 27 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 20 c2l55A_ 70.1 19 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 21 d2j3sa2 not modelled 69.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 22 d1qx4a1 not modelled 67.3 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 23 c2gpjA_ not modelled 65.3 15 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 24 d1ndha1 not modelled 65.0 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 25 c1krhA_ not modelled 58.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 26 d1ep3b1 not modelled 58.0 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 27 c1t11A_ not modelled 55.8 9 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 28 d1tvca1 not modelled 54.8 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 29 d1qfja1 not modelled 53.4 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 30 d2piaa1 not modelled 51.4 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 31 d1l1pa_ not modelled 49.7 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 32 c2kr7A_ not modelled 49.7 10 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 33 c2kfwA_ not modelled 48.3 20 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 34 d1umka1 not modelled 47.0 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 35 c1a8pA_ not modelled 46.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii 36 c2k7pA_ not modelled 39.4 19 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 16-17 37 c2jf1A_ not modelled 37.9 26 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide 38 c2k7qA_ not modelled 37.6 19 PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19 39 d1fnda1 not modelled 36.6 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 40 c1hxvA_ not modelled 35.8 15 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 41 d1hxva_ not modelled 35.8 15 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 42 d1gawa1 not modelled 35.1 26 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 43 c2k8iA_ not modelled 31.9 29 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 44 d2d7na1 not modelled 30.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 45 d2d7ma1 not modelled 29.9 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 46 c3pr9A_ not modelled 29.7 29 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 47 c3cgnA_ not modelled 27.6 21 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 48 d2dmca1 not modelled 26.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 49 c2bgjB_ not modelled 26.4 16 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms 50 d2bmwa1 not modelled 25.0 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 51 c3h0gE_ not modelled 23.5 22 PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 52 d2e9ia1 not modelled 23.4 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 53 c2l27B_ not modelled 23.4 26 PDB header:membrane protein, peptide binding protei Chain: B: PDB Molecule:peptide agonist; PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist 54 d1cqxa2 not modelled 23.1 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 55 c2pbcD_ not modelled 22.2 18 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 56 c3prdA_ not modelled 22.1 29 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 57 d1eika_ not modelled 21.8 13 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 58 c2rmfA_ not modelled 21.5 22 PDB header:hormone Chain: A: PDB Molecule:urocortin; PDBTitle: human urocortin 1 59 d2diaa1 not modelled 21.4 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 60 c1zeqX_ not modelled 21.3 7 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 61 d2iv2x1 not modelled 21.1 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 62 d1ix5a_ not modelled 21.0 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 63 c2h8rA_ not modelled 20.7 14 PDB header:transcription activator/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta; PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product 64 d1t9fa_ not modelled 20.1 47 Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain 65 c2vn1A_ not modelled 20.1 12 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 66 c2piaA_ not modelled 20.0 16 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 67 d2dj4a1 not modelled 19.5 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 68 c2e9jA_ not modelled 19.1 19 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b 69 c2lgoA_ not modelled 19.1 10 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 70 c3entB_ not modelled 18.7 25 PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65) 71 d1rl2a1 not modelled 18.4 20 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 72 d1kt0a2 not modelled 18.1 8 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 73 d1h0ha1 not modelled 17.8 26 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 74 d2jioa1 not modelled 17.4 29 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 75 d1vqoa1 not modelled 17.4 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 76 d1q1ca1 not modelled 17.2 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 77 c2ka3C_ not modelled 17.2 33 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 78 d1qfha1 not modelled 17.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 79 c1wlfA_ not modelled 17.0 26 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 80 d1dzfa2 not modelled 16.9 23 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 81 c2opgB_ not modelled 16.4 19 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz 82 c3o5fA_ not modelled 15.6 14 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 83 d1c9ha_ not modelled 15.6 7 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 84 c2xvsA_ not modelled 14.9 14 PDB header:antitumor protein Chain: A: PDB Molecule:tetratricopeptide repeat protein 5; PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain 85 c3shwA_ not modelled 14.9 19 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 86 c1qfhB_ not modelled 14.4 19 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 87 c2pmzV_ not modelled 14.2 17 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 88 d2d7pa1 not modelled 14.0 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 89 c3cnkB_ not modelled 13.9 23 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the dimerization domain of human2 filamin a 90 d1ogya1 not modelled 13.8 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 91 c3pr3B_ not modelled 13.8 33 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 92 d1r5pa_ not modelled 13.8 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 93 d2diba1 not modelled 13.6 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 94 d1cm3a_ not modelled 13.3 20 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 95 d1gr3a_ not modelled 13.1 28 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 96 c1gr3A_ not modelled 13.1 28 PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer 97 d1vlfm1 not modelled 12.8 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 98 c3ujhB_ not modelled 12.7 47 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 99 c3fpkB_ not modelled 12.6 16 PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0