Phyre 2 alignment of P0AFW4 with c3h0gE_

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Job Description | P0AFW4
Confidence | 23.46% | Date | Thu Jan 5 11:27:26 GMT 2012
Rank | 51 | Aligned Residues | 36
% Identity | 22% | Template | c3h0gE_
PDB info | PDB header:transcription | Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii | PDBTitle: rna polymerase ii from schizosaccharomyces pombe
Resolution | 3.65 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |  |  |  | . | . | . | . | . | . | . | 120 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | L | S | V | M | A | P | V | G | A | A | L | L | G | L | R | V | G | D | S | I | H | W | E | L | P | . | . | . | G | G | V | A | T | H | L | E | V | L | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | I | Q | L | A | D | P | V | A | R | Y | L | . | G | L | K | R | G | E | V | V | K | I | V | R | R | S | E | T | S | G | R | Y | N | S | Y | R | I | C | A
Template Known Secondary structure |  |  |  |  | T | T |  |  |  |  |  |  |  | . | T |  |  | T | T |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 172 | . | . | . | . | . | . | . | 180 | . | . | . |  | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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