Phyre 2 Results for P0AFW4

Email | l.a.kelley@imperial.ac.uk
Description | P0AFW4
Date | Thu Jan 5 11:27:26 GMT 2012
Unique Job ID | 6d89c29b3262ba5a

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3bmbB_ |
|  | 100.0 | 100 | PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein
2 | c2pn0D_ |
|  | 100.0 | 48 | PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea
3 | c2p4vA_ |
|  | 100.0 | 20 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
4 | c1grjA_ |
|  | 100.0 | 23 | PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli
5 | c2etnA_ |
|  | 99.9 | 27 | PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1
6 | d2f23a2 |
|  | 99.9 | 31 | Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain
7 | d2etna2 |
|  | 99.9 | 30 | Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain
8 | d1grja2 |
|  | 99.9 | 23 | Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain
9 | c3gtyX_ |
|  | 92.1 | 16 | PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone
10 | d1krha1 |
|  | 91.0 | 13 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
11 | d1fdra1 |
|  | 84.7 | 15 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
12 | d1grja1 |
|  | 83.4 | 27 | Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain
13 | d2cnda1 |
|  | 78.8 | 21 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
14 | d1t11a3 |
|  | 78.8 | 12 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
15 | d1gvha2 |
|  | 78.5 | 12 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
16 | d1w26a3 |
|  | 75.6 | 11 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
17 | c1w26B_ |
|  | 75.5 | 15 | PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins
18 | d1a8pa1 |
|  | 72.6 | 18 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
19 | d2f23a1 |
|  | 72.5 | 27 | Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain
20 | c2l55A_ |
|  | 70.1 | 19 | PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
21 | d2j3sa2 |
| not modelled | 69.8 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
22 | d1qx4a1 |
| not modelled | 67.3 | 17 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
23 | c2gpjA_ |
| not modelled | 65.3 | 15 | PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution
24 | d1ndha1 |
| not modelled | 65.0 | 20 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
25 | c1krhA_ |
| not modelled | 58.4 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase
26 | d1ep3b1 |
| not modelled | 58.0 | 16 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
27 | c1t11A_ |
| not modelled | 55.8 | 9 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor
28 | d1tvca1 |
| not modelled | 54.8 | 17 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
29 | d1qfja1 |
| not modelled | 53.4 | 13 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
30 | d2piaa1 |
| not modelled | 51.4 | 15 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
31 | d1l1pa_ |
| not modelled | 49.7 | 16 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
32 | c2kr7A_ |
| not modelled | 49.7 | 10 | PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd
33 | c2kfwA_ |
| not modelled | 48.3 | 20 | PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli
34 | d1umka1 |
| not modelled | 47.0 | 19 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
35 | c1a8pA_ |
| not modelled | 46.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii
36 | c2k7pA_ |
| not modelled | 39.4 | 19 | PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 16-17
37 | c2jf1A_ |
| not modelled | 37.9 | 26 | PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
38 | c2k7qA_ |
| not modelled | 37.6 | 19 | PDB header:structural protein Chain: A: PDB Molecule:filamin-a; PDBTitle: filamin a ig-like domains 18-19
39 | d1fnda1 |
| not modelled | 36.6 | 15 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
40 | c1hxvA_ |
| not modelled | 35.8 | 15 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor
41 | d1hxva_ |
| not modelled | 35.8 | 15 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
42 | d1gawa1 |
| not modelled | 35.1 | 26 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
43 | c2k8iA_ |
| not modelled | 31.9 | 29 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd
44 | d2d7na1 |
| not modelled | 30.5 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
45 | d2d7ma1 |
| not modelled | 29.9 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
46 | c3pr9A_ |
| not modelled | 29.7 | 29 | PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26
47 | c3cgnA_ |
| not modelled | 27.6 | 21 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd
48 | d2dmca1 |
| not modelled | 26.7 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
49 | c2bgjB_ |
| not modelled | 26.4 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms
50 | d2bmwa1 |
| not modelled | 25.0 | 14 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
51 | c3h0gE_ |
| not modelled | 23.5 | 22 | PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe
52 | d2e9ia1 |
| not modelled | 23.4 | 29 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
53 | c2l27B_ |
| not modelled | 23.4 | 26 | PDB header:membrane protein, peptide binding protei Chain: B: PDB Molecule:peptide agonist; PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist
54 | d1cqxa2 |
| not modelled | 23.1 | 11 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
55 | c2pbcD_ |
| not modelled | 22.2 | 18 | PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2
56 | c3prdA_ |
| not modelled | 22.1 | 29 | PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26
57 | d1eika_ |
| not modelled | 21.8 | 13 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
58 | c2rmfA_ |
| not modelled | 21.5 | 22 | PDB header:hormone Chain: A: PDB Molecule:urocortin; PDBTitle: human urocortin 1
59 | d2diaa1 |
| not modelled | 21.4 | 23 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
60 | c1zeqX_ |
| not modelled | 21.3 | 7 | PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
61 | d2iv2x1 |
| not modelled | 21.1 | 13 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
62 | d1ix5a_ |
| not modelled | 21.0 | 25 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
63 | c2h8rA_ |
| not modelled | 20.7 | 14 | PDB header:transcription activator/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta; PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
64 | d1t9fa_ |
| not modelled | 20.1 | 47 | Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain
65 | c2vn1A_ |
| not modelled | 20.1 | 12 | PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506
66 | c2piaA_ |
| not modelled | 20.0 | 16 | PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
67 | d2dj4a1 |
| not modelled | 19.5 | 26 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
68 | c2e9jA_ |
| not modelled | 19.1 | 19 | PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
69 | c2lgoA_ |
| not modelled | 19.1 | 10 | PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a
70 | c3entB_ |
| not modelled | 18.7 | 25 | PDB header:structural protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of nitrollin, a betagamma-crystallin from2 nitrosospira multiformis-in alternate space group (p65)
71 | d1rl2a1 |
| not modelled | 18.4 | 20 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2
72 | d1kt0a2 |
| not modelled | 18.1 | 8 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
73 | d1h0ha1 |
| not modelled | 17.8 | 26 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
74 | d2jioa1 |
| not modelled | 17.4 | 29 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
75 | d1vqoa1 |
| not modelled | 17.4 | 17 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2
76 | d1q1ca1 |
| not modelled | 17.2 | 24 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
77 | c2ka3C_ |
| not modelled | 17.2 | 33 | PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain
78 | d1qfha1 |
| not modelled | 17.2 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
79 | c1wlfA_ |
| not modelled | 17.0 | 26 | PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain
80 | d1dzfa2 |
| not modelled | 16.9 | 23 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
81 | c2opgB_ |
| not modelled | 16.4 | 19 | PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz
82 | c3o5fA_ |
| not modelled | 15.6 | 14 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii
83 | d1c9ha_ |
| not modelled | 15.6 | 7 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
84 | c2xvsA_ |
| not modelled | 14.9 | 14 | PDB header:antitumor protein Chain: A: PDB Molecule:tetratricopeptide repeat protein 5; PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain
85 | c3shwA_ |
| not modelled | 14.9 | 19 | PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide
86 | c1qfhB_ |
| not modelled | 14.4 | 19 | PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6
87 | c2pmzV_ |
| not modelled | 14.2 | 17 | PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
88 | d2d7pa1 |
| not modelled | 14.0 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
89 | c3cnkB_ |
| not modelled | 13.9 | 23 | PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the dimerization domain of human2 filamin a
90 | d1ogya1 |
| not modelled | 13.8 | 23 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
91 | c3pr3B_ |
| not modelled | 13.8 | 33 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
92 | d1r5pa_ |
| not modelled | 13.8 | 22 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like
93 | d2diba1 |
| not modelled | 13.6 | 29 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
94 | d1cm3a_ |
| not modelled | 13.3 | 20 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
95 | d1gr3a_ |
| not modelled | 13.1 | 28 | Fold:TNF-like Superfamily:TNF-like Family:TNF-like
96 | c1gr3A_ |
| not modelled | 13.1 | 28 | PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer
97 | d1vlfm1 |
| not modelled | 12.8 | 22 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
98 | c3ujhB_ |
| not modelled | 12.7 | 47 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
99 | c3fpkB_ |
| not modelled | 12.6 | 16 | PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium