 |
| Job Description | P0AFW4 | | Confidence | 20.68% | Date | Thu Jan 5 11:27:26 GMT 2012 |
| Rank | 63 | Aligned Residues | 56 |
| % Identity | 14% | Template | c2h8rA_ |
| PDB info |
PDB header:transcription activator/dna | Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta; |
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
|
| Resolution | 3.20 Å |
|
|   |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|  |  |  |
|
|
|
|  |  |  |
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
R | P | T | I | I | I | N | D | L | D | A | E | R | I | D | I | L | L | E | Q | P | A | Y | A | G | L | P | I | A | D | A | L | N | A | E | L | D | R | A | Q | M | C | S | P | E | E | M | P | H | D | V | V | T | M | N | S |
| Query Conservation |   |
|
|   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |
|   |
|   |
|   |   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |
|   |
|
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| Template Sequence |   |
R | N | R | F | K | W | G | P | A | S | Q | Q | I | L | Y | Q | A | Y | D | R | Q | K | N | P | S | K | E | E | R | E | A | L | V | E | E | C | N | R | A | E | C | L | Q | R | G | V | S | P | S | K | A | H | G | L | G | S |
| Template Known Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S | T | T | G | G | G | G | T | T |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|