Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	W	L	N	Q	L	Q	S	L	L	G	Q	S	S	S	S	T	S	S	S	A	D	Q	G	L	V	K	L	L	V	P	G	A	L	G	G	L	A	G	L	L	V	A	N	K	S	A	R	K	L	L	T	K	Y	G	T	N	A
Secondary structure
SS confidence
Disorder		?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?									?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	V	G	G	G	A	V	A	G	T	V	L	W	N	K	Y	K	D	K	I	R	A	A	H	Q	D	E	P	Q	F	G	A	Q	S	T	P	L	D	E	R	T	A	R	L	I	L	A	L	V	F	A	A	K	S	D	G	H	I	D
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	K	E	R	A	A	I	D	Q	Q	L	R	G	A	G	V	E	E	Q	G	R	V	L	I	E	Q	A	I	E	Q	P	L	D	P	Q	R	L	A	T	G	V	R	N	E	E	E	A	L	E	I	Y	F	L	S	C	A	A	I	D	I
Secondary structure
SS confidence
Disorder														?	?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Sequence		D	H	F	M	E	R	S	Y	L	N	A	L	G	D	A	L	K	I	P	Q	D	V	R	D	G	I	E	R	D	L	E	Q	Q	K	R	T	L	A	E
Secondary structure
SS confidence
Disorder																			?	?																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ou3 chain A domain 1 Region: 89 - 215 Aligned: 126 Modelled: 127 Confidence: 99.6% Identity: 17% Fold: TerB-like Superfamily: TerB-like Family: COG3793-like Phyre2 PDB 2jxu chain A Region: 94 - 200 Aligned: 107 Modelled: 107 Confidence: 98.7% Identity: 9% PDB header:unknown function Chain: A: PDB Molecule:terb; PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae Phyre2 PDB 1z67 chain A domain 1 Region: 127 - 210 Aligned: 61 Modelled: 61 Confidence: 86.5% Identity: 18% Fold: YidB-like Superfamily: YidB-like Family: YidB-like Phyre2 PDB 3hug chain J Region: 112 - 170 Aligned: 52 Modelled: 59 Confidence: 56.3% Identity: 23% PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl Phyre2 PDB 1ais chain B domain 2 Region: 119 - 212 Aligned: 86 Modelled: 94 Confidence: 56.1% Identity: 8% Fold: Cyclin-like Superfamily: Cyclin-like Family: Transcription factor IIB (TFIIB), core domain Phyre2 PDB 1ln4 chain A Region: 180 - 212 Aligned: 33 Modelled: 33 Confidence: 47.6% Identity: 30% Fold: IF3-like Superfamily: YhbY-like Family: YhbY-like Phyre2 PDB 2p7v chain B domain 1 Region: 177 - 210 Aligned: 34 Modelled: 34 Confidence: 42.1% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 1yzm chain A domain 1 Region: 105 - 124 Aligned: 20 Modelled: 20 Confidence: 39.3% Identity: 25% Fold: Long alpha-hairpin Superfamily: Rabenosyn-5 Rab-binding domain-like Family: Rabenosyn-5 Rab-binding domain-like Phyre2 PDB 1z0k chain B domain 1 Region: 105 - 124 Aligned: 20 Modelled: 20 Confidence: 38.9% Identity: 25% Fold: Long alpha-hairpin Superfamily: Rabenosyn-5 Rab-binding domain-like Family: Rabenosyn-5 Rab-binding domain-like Phyre2 PDB 1ku7 chain A Region: 177 - 210 Aligned: 34 Modelled: 34 Confidence: 37.5% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 3fym chain A Region: 149 - 203 Aligned: 55 Modelled: 55 Confidence: 36.9% Identity: 7% PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus Phyre2 PDB 3ol4 chain B Region: 98 - 150 Aligned: 53 Modelled: 53 Confidence: 35.3% Identity: 6% PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c Phyre2 PDB 1rq8 chain A Region: 181 - 212 Aligned: 32 Modelled: 32 Confidence: 34.9% Identity: 25% Fold: IF3-like Superfamily: YhbY-like Family: YhbY-like Phyre2 PDB 2iv1 chain J Region: 131 - 206 Aligned: 70 Modelled: 76 Confidence: 34.4% Identity: 10% PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase Phyre2 PDB 1tty chain A Region: 177 - 210 Aligned: 34 Modelled: 34 Confidence: 33.9% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 1z0j chain B domain 1 Region: 105 - 123 Aligned: 19 Modelled: 19 Confidence: 33.4% Identity: 42% Fold: Long alpha-hairpin Superfamily: Rabenosyn-5 Rab-binding domain-like Family: Rabenosyn-5 Rab-binding domain-like Phyre2 PDB 1jo0 chain A Region: 181 - 212 Aligned: 32 Modelled: 32 Confidence: 33.2% Identity: 25% Fold: IF3-like Superfamily: YhbY-like Family: YhbY-like Phyre2 PDB 3obk chain H Region: 107 - 150 Aligned: 44 Modelled: 44 Confidence: 32.9% Identity: 20% PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen Phyre2 PDB 1ctd chain A Region: 115 - 132 Aligned: 18 Modelled: 18 Confidence: 32.4% Identity: 33% Fold: EF Hand-like Superfamily: EF-hand Family: Calmodulin-like Phyre2 PDB 1vke chain B Region: 106 - 161 Aligned: 56 Modelled: 56 Confidence: 32.4% Identity: 11% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 1 d2ou3a1 2 c2jxuA_ 3 d1z67a1 4 c3hugJ_ 5 d1aisb2 6 d1ln4a_ 7 d2p7vb1 8 d1yzma1 9 d1z0kb1 10 d1ku7a_ 11 c3fymA_ 12 c3ol4B_ 13 d1rq8a_ 14 c2iv1J_ 15 d1ttya_ 16 d1z0jb1 17 d1jo0a_ 18 c3obkH_ 19 d1ctda_ 20 d1vkeb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ou3a1 99.6 17 Fold:TerB-like Superfamily:TerB-like Family:COG3793-like 2 c2jxuA_ 98.7 9 PDB header:unknown function Chain: A: PDB Molecule:terb; PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae 3 d1z67a1 86.5 18 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 4 c3hugJ_ 56.3 23 PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 5 d1aisb2 56.1 8 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 6 d1ln4a_ 47.6 30 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 7 d2p7vb1 42.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 8 d1yzma1 39.3 25 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 9 d1z0kb1 38.9 25 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 10 d1ku7a_ 37.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 11 c3fymA_ 36.9 7 PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus 12 c3ol4B_ 35.3 6 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 13 d1rq8a_ 34.9 25 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 14 c2iv1J_ 34.4 10 PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase 15 d1ttya_ 33.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 16 d1z0jb1 33.4 42 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 17 d1jo0a_ 33.2 25 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 18 c3obkH_ 32.9 20 PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen 19 d1ctda_ 32.4 33 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 20 d1vkeb_ 32.4 11 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 21 c2l27B_ not modelled 32.2 12 PDB header:membrane protein, peptide binding protei Chain: B: PDB Molecule:peptide agonist; PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist 22 c2rmfA_ not modelled 30.6 21 PDB header:hormone Chain: A: PDB Molecule:urocortin; PDBTitle: human urocortin 1 23 c3m3hA_ not modelled 30.6 20 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor' 24 d1msza_ not modelled 30.5 6 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 25 c1mszA_ not modelled 30.5 6 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: solution structure of the r3h domain from human smubp-2 26 c2wusR_ not modelled 30.5 9 PDB header:structural protein Chain: R: PDB Molecule:putative uncharacterized protein; PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz 27 d1dwka1 not modelled 26.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain 28 d1vola2 not modelled 24.6 11 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 29 d2gyqa1 not modelled 23.9 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 30 d1d5ya1 not modelled 22.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 31 c3t72o_ not modelled 22.4 18 PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex 32 c2k29A_ not modelled 22.2 26 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 33 c3oi8B_ not modelled 21.8 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of functionally unknown conserved protein domain2 from neisseria meningitidis mc58 34 d1ku3a_ not modelled 20.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 35 d1ufma_ not modelled 19.4 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 36 c2k9lA_ not modelled 18.5 8 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 37 c3beyC_ not modelled 18.1 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 38 c2a6eF_ not modelled 17.8 18 PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme 39 c1p8cD_ not modelled 17.7 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 40 c3hjlA_ not modelled 16.1 11 PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus 41 d2gtia2 not modelled 16.0 9 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 42 c2zetD_ not modelled 15.2 10 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin 43 d1hqva_ not modelled 15.1 11 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 44 c2i7aA_ not modelled 14.5 13 PDB header:hydrolase Chain: A: PDB Molecule:calpain 13; PDBTitle: domain iv of human calpain 13 45 d1l6sa_ not modelled 14.3 23 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 46 d1vola1 not modelled 13.6 6 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 47 d1bl0a1 not modelled 13.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 48 c1l9uH_ not modelled 13.1 24 PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution 49 d2c1ha1 not modelled 12.9 29 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 50 d1w8ia_ not modelled 12.7 37 Fold:PIN domain-like Superfamily:PIN domain-like Family:PIN domain 51 c1y66D_ not modelled 12.4 20 PDB header:de novo protein Chain: D: PDB Molecule:engrailed homeodomain; PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant 52 c2rhbD_ not modelled 11.7 27 PDB header:viral protein Chain: D: PDB Molecule:uridylate-specific endoribonuclease; PDBTitle: crystal structure of nsp15-h234a mutant- hexamer in2 asymmetric unit 53 d1h7na_ not modelled 11.5 29 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 54 d1ojra_ not modelled 11.3 13 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 55 c2ib1A_ not modelled 11.0 11 PDB header:apoptosis Chain: A: PDB Molecule:death domain containing membrane protein nradd; PDBTitle: solution structure of p45 death domain 56 d2e74g1 not modelled 11.0 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 57 d2q0ta1 not modelled 10.9 23 Fold:AhpD-like Superfamily:AhpD-like Family:AhpD 58 d1lmb3_ not modelled 10.7 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 59 d1bi5a2 not modelled 10.7 15 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 60 d2ozka2 not modelled 10.6 27 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 61 c1vf5G_ not modelled 10.5 20 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 62 d1vf5g_ not modelled 10.5 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 63 d2cyya1 not modelled 10.4 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 64 d1mkma1 not modelled 10.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 65 c2lfcA_ not modelled 9.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j 66 c3bh1A_ not modelled 9.8 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0371 protein dip2346; PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae 67 d2h85a2 not modelled 9.8 27 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 68 d2hf5a1 not modelled 9.8 29 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 69 d1ngra_ not modelled 9.6 15 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 70 c2ev2B_ not modelled 9.6 15 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302; PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5 71 d2p90a1 not modelled 9.6 21 Fold:Phosphorylase/hydrolase-like Superfamily:Cgl1923-like Family:Cgl1923-like 72 c2of5K_ not modelled 9.5 15 PDB header:apoptosis Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing PDBTitle: oligomeric death domain complex 73 d1rp3a1 not modelled 9.3 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 74 d2tpta1 not modelled 9.2 21 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 75 c1ichA_ not modelled 9.1 15 PDB header:apoptosis Chain: A: PDB Molecule:tumor necrosis factor receptor-1; PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain 76 d1icha_ not modelled 9.1 15 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 77 d1tw3a1 not modelled 8.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 78 d2bida_ not modelled 8.8 25 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 79 d1o17a1 not modelled 8.8 19 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 80 c2gtiA_ not modelled 8.5 9 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l) 81 d1khda1 not modelled 8.5 9 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 82 c1wxpA_ not modelled 8.2 25 PDB header:transport protein Chain: A: PDB Molecule:tho complex subunit 1; PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84 83 d2ofya1 not modelled 8.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 84 c2cpmA_ not modelled 8.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sperm-associated antigen 7; PDBTitle: solution structure of the r3h domain of human sperm-2 associated antigen 7 85 c2p90B_ not modelled 8.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 86 c2wvsD_ not modelled 7.9 24 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 87 c1gpmD_ not modelled 7.9 14 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 88 c2z2sD_ not modelled 7.9 11 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 89 d2gf5a1 not modelled 7.8 30 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 90 c3omtA_ not modelled 7.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 91 c2vn2B_ not modelled 7.7 15 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 92 d1brwa1 not modelled 7.7 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 93 d1or7a1 not modelled 7.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 94 d1t07a_ not modelled 7.7 14 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 95 d1u0ua2 not modelled 7.7 20 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 96 c3t98A_ not modelled 7.6 33 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore complex protein nup54; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58 97 d1ee0a2 not modelled 7.6 25 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 98 c2yqfA_ not modelled 7.6 15 PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1 99 c3e35A_ not modelled 7.5 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein sco1997; PDBTitle: actinobacteria-specific protein of unknown function, sco1997

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0