Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	V	N	Y	L	N	D	S	D	L	D	F	L	Q	H	C	S	E	E	Q	L	A	N	F	A	R	L	L	T	H	N	E	K	G	K	T	R	L	S	S	V	L	M	R	N	E	L	F	K	S	M	E	G	H	P	E	Q	H	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																	?	?		?	?	?	?	?						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	N	W	Q	L	I	A	G	E	L	Q	H	F	G	G	D	S	I	A	N	K	L	R	G	H	G	K	L	Y	R	A	I	L	L	D	V	S	K	R	L	K	L	K	A	D	K	E	M	S	T	F	E	I	E	Q	Q	L	L	E	Q
Secondary structure
SS confidence
Disorder																																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	L	R	N	T	W	K	K	M	D	E	E	H	K	Q	E	F	L	H	A	V	D	A	R	V	N	E	L	E	E	L	L	P	L	L	M	K	D	K	L	L	A	K	G	V	S	H	L	L	S	S	Q	L	T	R	I	L	R	T	H
Secondary structure
SS confidence
Disorder									?	?	?											?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence		A	A	M	S	V	L	G	H	G	L	L	R	G	A	G	L	G	G	P	V	G	A	A	L	N	G	V	K	A	V	S	G	S	A	Y	R	V	T	I	P	A	V	L	Q	I	A	C	L	R	R	M	V	S	A	T	Q	V
Secondary structure
SS confidence
Disorder																															?	?	?	?																				?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oey chain A Region: 85 - 103 Aligned: 19 Modelled: 19 Confidence: 77.0% Identity: 37% Fold: beta-Grasp (ubiquitin-like) Superfamily: CAD & PB1 domains Family: PB1 domain Phyre2 PDB 2o3l chain A domain 1 Region: 50 - 113 Aligned: 56 Modelled: 64 Confidence: 53.0% Identity: 16% Fold: Left-handed superhelix Superfamily: BH3980-like Family: BH3980-like Phyre2 PDB 1gt0 chain D Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 50.3% Identity: 26% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2wvr chain B Region: 60 - 78 Aligned: 19 Modelled: 19 Confidence: 49.8% Identity: 11% PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex Phyre2 PDB 1wgf chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 47.1% Identity: 22% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2hh6 chain A domain 1 Region: 24 - 113 Aligned: 76 Modelled: 90 Confidence: 46.6% Identity: 14% Fold: Left-handed superhelix Superfamily: BH3980-like Family: BH3980-like Phyre2 PDB 2e6o chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 46.0% Identity: 26% PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 Phyre2 PDB 2zxx chain A Region: 60 - 78 Aligned: 19 Modelled: 19 Confidence: 44.4% Identity: 11% PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex Phyre2 PDB 3u2b chain C Region: 93 - 140 Aligned: 42 Modelled: 48 Confidence: 44.3% Identity: 17% PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna Phyre2 PDB 2lef chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 42.8% Identity: 17% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2eqz chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 42.0% Identity: 22% PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 Phyre2 PDB 1j3x chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 41.5% Identity: 22% PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 Phyre2 PDB 1j3x chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 41.5% Identity: 22% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2gzk chain A domain 2 Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 40.1% Identity: 26% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 1hry chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 40.1% Identity: 26% PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr Phyre2 PDB 1hrz chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 40.1% Identity: 26% PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr Phyre2 PDB 2cs1 chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 39.3% Identity: 22% PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein Phyre2 PDB 1j46 chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 39.2% Identity: 26% Fold: HMG-box Superfamily: HMG-box Family: HMG-box Phyre2 PDB 2d7l chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 38.3% Identity: 4% PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 Phyre2 PDB 2yul chain A Region: 118 - 140 Aligned: 23 Modelled: 23 Confidence: 38.3% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 Phyre2 1 d1oeya_ 2 d2o3la1 3 d1gt0d_ 4 c2wvrB_ 5 d1wgfa_ 6 d2hh6a1 7 c2e6oA_ 8 c2zxxA_ 9 c3u2bC_ 10 d2lefa_ 11 c2eqzA_ 12 c1j3xA_ 13 d1j3xa_ 14 d2gzka2 15 c1hryA_ 16 c1hrzA_ 17 c2cs1A_ 18 d1j46a_ 19 c2d7lA_ 20 c2yulA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oeya_ 77.0 37 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 2 d2o3la1 53.0 16 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 3 d1gt0d_ 50.3 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 4 c2wvrB_ 49.8 11 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 5 d1wgfa_ 47.1 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 6 d2hh6a1 46.6 14 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 7 c2e6oA_ 46.0 26 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 8 c2zxxA_ 44.4 11 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 9 c3u2bC_ 44.3 17 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 10 d2lefa_ 42.8 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 11 c2eqzA_ 42.0 22 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 12 c1j3xA_ 41.5 22 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 13 d1j3xa_ 41.5 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 14 d2gzka2 40.1 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 15 c1hryA_ 40.1 26 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr 16 c1hrzA_ 40.1 26 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr 17 c2cs1A_ 39.3 22 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 18 d1j46a_ 39.2 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 19 c2d7lA_ 38.3 4 PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 20 c2yulA_ 38.3 26 PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17 21 c1wz6A_ not modelled 37.4 22 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 22 c3fghA_ not modelled 35.7 13 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 23 c2crjA_ not modelled 33.0 26 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 24 c1hmfA_ not modelled 31.5 17 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 25 d1hmfa_ not modelled 31.5 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 26 d1jhga_ not modelled 30.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Trp repressor, TrpR 27 d1lwma_ not modelled 30.0 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 28 c2co9A_ not modelled 28.5 22 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 29 c2jvfA_ not modelled 28.2 28 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 30 d1v54m_ not modelled 28.0 18 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 31 c1qysA_ not modelled 27.7 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 32 d1i11a_ not modelled 27.2 26 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 33 c1aabA_ not modelled 27.0 22 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein; PDBTitle: nmr structure of rat hmg1 hmga fragment 34 d1aaba_ not modelled 27.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 35 d1k99a_ not modelled 26.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 36 d1ckta_ not modelled 26.0 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 37 d2o4ta1 not modelled 25.9 16 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 38 d1hsma_ not modelled 24.2 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 39 d1j3da_ not modelled 22.5 17 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 40 c2qguA_ not modelled 22.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 41 d1r8ja1 not modelled 22.2 13 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 42 c3cxjB_ not modelled 21.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 43 c3frwF_ not modelled 20.8 15 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative trp repressor protein; PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum 44 d1puza_ not modelled 20.8 16 Fold:YgfY-like Superfamily:YgfY-like Family:YgfY-like 45 c1e1hD_ not modelled 20.4 42 PDB header:hydrolase Chain: D: PDB Molecule:botulinum neurotoxin type a light chain; PDBTitle: crystal structure of recombinant botulinum neurotoxin type2 a light chain, self-inhibiting zn endopeptidase. 46 d1cc5a_ not modelled 20.0 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 47 d1v64a_ not modelled 19.2 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 48 d1gl4a1 not modelled 18.7 35 Fold:GFP-like Superfamily:GFP-like Family:Domain G2 of nidogen-1 49 d1v63a_ not modelled 18.7 9 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 50 c1x6iB_ not modelled 18.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ygfy; PDBTitle: crystal structure of ygfy from escherichia coli 51 d1sv1a_ not modelled 18.0 13 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 52 c2awyB_ not modelled 17.7 11 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh; PDBTitle: met-dcrh-hr 53 c2y69Z_ not modelled 17.6 19 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 54 c2l66B_ not modelled 17.1 60 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 55 c1rh1A_ not modelled 16.9 14 PDB header:antibiotic Chain: A: PDB Molecule:colicin b; PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution 56 c3lisB_ not modelled 16.9 16 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 57 c2rlwA_ not modelled 16.6 30 PDB header:toxin Chain: A: PDB Molecule:plnf; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef 58 c1h4uA_ not modelled 16.5 35 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 59 d2je8a5 not modelled 16.1 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 60 d1vp8a_ not modelled 16.1 21 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 61 c3korD_ not modelled 16.0 19 PDB header:transcription Chain: D: PDB Molecule:possible trp repressor; PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus 62 d2al3a1 not modelled 15.7 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 63 d2akja1 not modelled 15.5 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 64 d1kx7a_ not modelled 14.9 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 c2lm4A_ not modelled 14.6 26 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 66 c2jr5A_ not modelled 14.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0350 protein vc_2471; PDBTitle: solution structure of upf0350 protein vc_2471. northeast2 structural genomics target vcr36 67 d1ctda_ not modelled 14.4 38 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 68 d1tlha_ not modelled 13.8 16 Fold:Anti-sigma factor AsiA Superfamily:Anti-sigma factor AsiA Family:Anti-sigma factor AsiA 69 c1r8jB_ not modelled 13.8 13 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 70 c1ojhK_ not modelled 13.7 17 PDB header:protein binding Chain: K: PDB Molecule:nbla; PDBTitle: crystal structure of nbla from pcc 7120 71 d1m47a_ not modelled 13.7 24 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 72 c2nxbB_ not modelled 13.1 13 PDB header:signaling protein Chain: B: PDB Molecule:bromodomain-containing protein 3; PDBTitle: crystal structure of human bromodomain containing protein 3 (brd3) 73 d1ojha_ not modelled 12.5 17 Fold:NblA-like Superfamily:NblA-like Family:NblA-like 74 c3lpgA_ not modelled 12.3 15 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 75 c2je8B_ not modelled 11.8 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 76 d1fcdc1 not modelled 11.6 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 77 c3d0wD_ not modelled 11.6 26 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yflh protein; PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326 78 c3bzjA_ not modelled 11.6 22 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 79 d1pgja1 not modelled 11.3 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 80 c2zxyA_ not modelled 11.2 22 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 81 d1ql3a_ not modelled 11.2 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 d1rh1a2 not modelled 11.1 16 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 83 c1zb7A_ not modelled 10.8 50 PDB header:toxin Chain: A: PDB Molecule:neurotoxin; PDBTitle: crystal structure of botulinum neurotoxin type g light chain 84 d1dvha_ not modelled 10.7 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 d1peqa1 not modelled 10.5 7 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 86 c2r7tA_ not modelled 10.5 24 PDB header:transferase/rna Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc)2 complex 87 d1c53a_ not modelled 10.5 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 88 c3ogrA_ not modelled 10.5 23 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 89 d1v2za_ not modelled 10.4 12 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 90 d1txla_ not modelled 10.1 20 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YodA 91 c1txlA_ not modelled 10.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:metal-binding protein yoda; PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149 92 d1zj8a1 not modelled 10.1 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 93 c2zonG_ not modelled 9.9 13 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 94 d1h9xa1 not modelled 9.8 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 95 c3ivpD_ not modelled 9.7 9 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 96 c3op9A_ not modelled 9.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 97 c2da4A_ not modelled 9.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 98 c2xhlA_ not modelled 9.6 50 PDB header:hydrolase Chain: A: PDB Molecule:botulinum neurotoxin b light chain; PDBTitle: structure of a functional derivative of clostridium2 botulinum neurotoxin type b 99 c2xrhA_ not modelled 9.4 17 PDB header:unknown function Chain: A: PDB Molecule:protein hp0721; PDBTitle: crystal structure of the truncated form of hp0721

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0