Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	L	S	S	Q	H	Y	L	V	I	T	A	L	G	A	D	R	P	G	I	V	N	T	I	T	R	H	V	S	S	C	G	C	N	I	E	D	S	R	L	A	M	L	G	E	E	F	T	F	I	M	L	L	S	G	S	W	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	T	L	I	E	S	T	L	P	L	K	G	A	E	L	D	L	L	I	V	M	K	R	T	T	A	R	P	R	P	P	M	P	A	S	V	W	V	Q	V	D	V	A	D	S	P	H	L	I	E	R	F	T	A	L	F	D	A	H	H
Secondary structure
SS confidence
Disorder														?											?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	N	I	A	E	L	V	S	R	T	Q	P	A	E	N	E	R	A	A	Q	L	H	I	Q	I	T	A	H	S	P	A	S	A	D	A	A	N	I	E	Q	A	F	K	A	L	C	T	E	L	N	A	Q	G	S	I	N	V	V	N	Y
Secondary structure
SS confidence
Disorder										?	?		?	?	?	?																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190
Sequence		S	Q	H	D	E	Q	D	G	V	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u8s chain B Region: 4 - 178 Aligned: 170 Modelled: 175 Confidence: 100.0% Identity: 44% PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor Phyre2 PDB 2nyi chain B Region: 6 - 178 Aligned: 168 Modelled: 173 Confidence: 100.0% Identity: 24% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria Phyre2 PDB 3p96 chain A Region: 6 - 184 Aligned: 172 Modelled: 179 Confidence: 99.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form Phyre2 PDB 1u8s chain A domain 1 Region: 4 - 89 Aligned: 86 Modelled: 86 Confidence: 99.8% Identity: 55% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 3nrb chain D Region: 6 - 175 Aligned: 164 Modelled: 170 Confidence: 99.7% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution Phyre2 PDB 1u8s chain A domain 2 Region: 90 - 178 Aligned: 83 Modelled: 89 Confidence: 99.7% Identity: 34% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1zpv chain A domain 1 Region: 95 - 179 Aligned: 79 Modelled: 85 Confidence: 99.7% Identity: 16% Fold: Ferredoxin-like Superfamily: ACT-like Family: SP0238-like Phyre2 PDB 3obi chain C Region: 6 - 175 Aligned: 164 Modelled: 170 Confidence: 99.6% Identity: 15% PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution Phyre2 PDB 3n0v chain D Region: 95 - 182 Aligned: 84 Modelled: 88 Confidence: 99.6% Identity: 12% PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution Phyre2 PDB 3lou chain B Region: 7 - 175 Aligned: 161 Modelled: 169 Confidence: 99.6% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution Phyre2 PDB 3o1l chain B Region: 7 - 175 Aligned: 162 Modelled: 169 Confidence: 99.6% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution Phyre2 PDB 3l76 chain B Region: 6 - 177 Aligned: 160 Modelled: 172 Confidence: 99.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis Phyre2 PDB 2f06 chain B Region: 11 - 132 Aligned: 101 Modelled: 101 Confidence: 99.0% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron Phyre2 PDB 3ibw chain A Region: 92 - 172 Aligned: 75 Modelled: 81 Confidence: 98.4% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 2dtj chain A Region: 6 - 172 Aligned: 142 Modelled: 167 Confidence: 98.3% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum Phyre2 PDB 2zho chain B Region: 5 - 129 Aligned: 109 Modelled: 125 Confidence: 98.2% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) Phyre2 PDB 2re1 chain A Region: 5 - 171 Aligned: 137 Modelled: 157 Confidence: 98.1% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits Phyre2 PDB 1ygy chain A domain 3 Region: 93 - 165 Aligned: 66 Modelled: 73 Confidence: 97.9% Identity: 12% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1sc6 chain A domain 3 Region: 3 - 79 Aligned: 77 Modelled: 77 Confidence: 97.8% Identity: 10% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 2fgc chain A domain 2 Region: 95 - 165 Aligned: 66 Modelled: 71 Confidence: 97.8% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 1 c1u8sB_ 2 c2nyiB_ 3 c3p96A_ 4 d1u8sa1 5 c3nrbD_ 6 d1u8sa2 7 d1zpva1 8 c3obiC_ 9 c3n0vD_ 10 c3louB_ 11 c3o1lB_ 12 c3l76B_ 13 c2f06B_ 14 c3ibwA_ 15 c2dtjA_ 16 c2zhoB_ 17 c2re1A_ 18 d1ygya3 19 d1sc6a3 20 d2fgca2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1u8sB_ 100.0 44 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 2 c2nyiB_ 100.0 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 3 c3p96A_ 99.9 13 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form 4 d1u8sa1 99.8 55 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 5 c3nrbD_ 99.7 14 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 6 d1u8sa2 99.7 34 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 7 d1zpva1 99.7 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 8 c3obiC_ 99.6 15 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 9 c3n0vD_ 99.6 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 10 c3louB_ 99.6 13 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 11 c3o1lB_ 99.6 14 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 12 c3l76B_ 99.0 16 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 13 c2f06B_ 99.0 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 14 c3ibwA_ 98.4 7 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 15 c2dtjA_ 98.3 16 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 16 c2zhoB_ 98.2 19 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 17 c2re1A_ 98.1 12 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 18 d1ygya3 97.9 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 19 d1sc6a3 97.8 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 20 d2fgca2 97.8 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 21 c3c1nA_ not modelled 97.8 11 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 22 d2f06a2 not modelled 97.7 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 23 c2fgcA_ not modelled 97.7 17 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 24 d2pc6a2 not modelled 97.7 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 25 d2f1fa1 not modelled 97.7 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 26 c2pc6C_ not modelled 97.6 15 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 27 c3mwbA_ not modelled 97.5 18 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 28 c3ab4K_ not modelled 97.3 15 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 29 c2f1fA_ not modelled 97.3 13 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 30 c2cdqB_ not modelled 97.2 11 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 31 d2f06a1 not modelled 97.2 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 32 d2qmwa2 not modelled 97.1 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 33 c2qmxB_ not modelled 97.0 10 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 34 c1ygyA_ not modelled 97.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 35 c2qmwA_ not modelled 96.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 36 c3luyA_ not modelled 96.7 13 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 37 d1phza1 not modelled 96.6 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 38 c3mtjA_ not modelled 96.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 39 c3mahA_ not modelled 96.0 7 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 40 d2hmfa3 not modelled 95.6 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 41 c1y7pB_ not modelled 94.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 42 c3k5pA_ not modelled 94.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 43 d2hmfa2 not modelled 94.1 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 44 c1ybaC_ not modelled 93.6 10 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 45 c2j0wA_ not modelled 92.7 10 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 46 d2cdqa2 not modelled 92.3 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 47 d2cdqa3 not modelled 86.4 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 48 d2j0wa2 not modelled 86.4 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 49 c1tdjA_ not modelled 79.7 9 PDB header:allostery Chain: A: PDB Molecule:biosynthetic threonine deaminase; PDBTitle: threonine deaminase (biosynthetic) from e. coli 50 c2phmA_ not modelled 73.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 51 d1vgya2 not modelled 60.0 14 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 52 c2jheB_ not modelled 59.8 12 PDB header:transcription Chain: B: PDB Molecule:transcription regulator tyrr; PDBTitle: n-terminal domain of tyrr transcription factor (residues 1 -2 190) 53 d2j0wa3 not modelled 56.4 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 54 d1zhva2 not modelled 52.3 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 55 d1rwua_ not modelled 51.7 14 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 56 c1rwuA_ not modelled 51.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 57 d3ceda1 not modelled 49.4 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 58 c1zhvA_ not modelled 46.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8. 59 d1geea_ not modelled 43.6 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 60 d1zvpa2 not modelled 38.6 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 61 d1gtda_ not modelled 36.3 8 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 62 c2qc8J_ not modelled 34.6 19 PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of human glutamine synthetase in complex with adp2 and methionine sulfoximine phosphate 63 c2yvqA_ not modelled 33.6 11 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 64 d1v5va2 not modelled 32.0 12 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 65 c1zvpB_ not modelled 31.8 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein vc0802; PDBTitle: crystal structure of a protein of unknown function vc0802 from vibrio2 cholerae, possible transport protein 66 c2uygF_ not modelled 30.8 19 PDB header:lyase Chain: F: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus 67 d3bypa1 not modelled 29.9 15 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 68 d1gqoa_ not modelled 28.7 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 69 c3n8kG_ not modelled 25.6 6 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 70 d1wosa2 not modelled 25.1 9 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 71 d1uqra_ not modelled 23.6 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 72 c3lwzC_ not modelled 23.1 13 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 73 d1u5ta1 not modelled 22.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 74 c1x31A_ not modelled 22.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 75 d1lfpa_ not modelled 22.4 14 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 76 c1worA_ not modelled 21.9 10 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of t-protein of the glycine cleavage2 system 77 d1fc4a_ not modelled 20.9 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 78 c2k4mA_ not modelled 19.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 79 d1zcza1 not modelled 19.4 17 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 80 d1xq1a_ not modelled 17.6 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 81 d1gtza_ not modelled 17.3 13 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 82 c3u80A_ not modelled 16.7 4 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 83 c2oz5A_ not modelled 14.7 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phosphotyrosine protein phosphatase ptpb; PDBTitle: crystal structure of mycobacterium tuberculosis protein tyrosine2 phosphatase ptpb in complex with the specific inhibitor omts 84 d1ulua_ not modelled 14.5 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 85 d1pj5a4 not modelled 14.5 13 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 86 c2ptgA_ not modelled 14.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure of eimeria tenella enoyl reductase 87 d1h05a_ not modelled 13.9 7 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 88 d1nxia_ not modelled 13.1 11 Fold:Ferredoxin-like Superfamily:Hypothetical protein VC0424 Family:Hypothetical protein VC0424 89 c2d1uA_ not modelled 12.4 7 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 90 d1tdja2 not modelled 11.6 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 91 d2joqa1 not modelled 11.5 3 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:HP0495-like 92 c2zw2B_ not modelled 11.2 16 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 93 c3jrnA_ not modelled 11.1 9 PDB header:plant protein Chain: A: PDB Molecule:at1g72930 protein; PDBTitle: crystal structure of tir domain from arabidopsis thaliana 94 c3oziB_ not modelled 11.0 9 PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 95 d1d7oa_ not modelled 10.8 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 96 c2zmeA_ not modelled 10.7 12 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 97 d1a9xa2 not modelled 10.6 11 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 98 d1ywfa1 not modelled 10.2 33 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Mycobacterial PtpB-like 99 c2w8wA_ not modelled 9.9 13 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0