Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	F	T	I	Q	L	I	I	I	L	I	C	L	F	Y	G	A	R	K	G	G	I	A	L	G	L	L	G	G	I	G	L	V	I	L	V	F	V	F	H	L	Q	P	G	K	P	P	V	D	V	M	L	V	I	I	A	V	V	A
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	S	A	T	L	Q	A	S	G	G	L	D	V	M	L	Q	I	A	E	K	L	L	R	R	N	P	K	Y	V	S	I	V	A	P	F	V	T	C	T	L	T	I	L	C	G	T	G	H	V	V	Y	T	I	L	P	I	I	Y	D	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	K	N	N	I	R	P	E	R	P	M	A	A	S	S	I	G	A	Q	M	G	I	I	A	S	P	V	S	V	A	V	V	S	L	V	A	M	L	G	N	V	T	F	D	G	R	H	L	E	F	L	D	L	L	A	I	T	I	P
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	T	L	I	G	I	L	A	I	G	I	F	S	W	F	R	G	K	D	L	D	K	D	E	E	F	Q	K	F	I	S	V	P	E	N	R	E	Y	V	Y	G	D	T	A	T	L	L	D	K	K	L	P	K	S	N	W	L	A	M	W
Secondary structure
SS confidence
Disorder																				?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	F	L	G	A	I	A	V	V	A	L	L	G	A	D	S	D	L	R	P	S	F	G	G	K	P	L	S	M	V	L	V	I	Q	M	F	M	L	L	T	G	A	L	I	I	I	L	T	K	T	N	P	A	S	I	S	K	N	E	V
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?	?	?	?	?																										?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	R	S	G	M	I	A	I	V	A	V	Y	G	I	A	W	M	A	E	T	M	F	G	A	H	M	S	E	I	Q	G	V	L	G	E	M	V	K	E	Y	P	W	A	Y	A	I	V	L	L	L	V	S	K	F	V	N	S	Q	A	A
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	L	A	A	I	V	P	V	A	L	A	I	G	V	D	P	A	Y	I	V	A	S	A	P	A	C	Y	G	Y	Y	I	L	P	T	Y	P	S	D	L	A	A	I	Q	F	D	R	S	G	T	T	H	I	G	R	F	V	I	N	H	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Sequence		F	I	L	P	G	L	I	G	V	S	V	S	C	V	F	G	W	I	F	A	A	M	Y	G	F	L
Secondary structure
SS confidence
Disorder																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zbs chain A domain 1 Region: 106 - 156 Aligned: 39 Modelled: 51 Confidence: 53.9% Identity: 21% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 1q90 chain D Region: 202 - 274 Aligned: 67 Modelled: 73 Confidence: 52.3% Identity: 15% Fold: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Phyre2 PDB 3b8e chain B Region: 166 - 211 Aligned: 45 Modelled: 46 Confidence: 50.2% Identity: 16% PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump Phyre2 PDB 2zv6 chain A Region: 400 - 422 Aligned: 20 Modelled: 23 Confidence: 49.6% Identity: 30% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin b3; PDBTitle: crystal structure of human squamous cell carcinoma antigen 1 Phyre2 PDB 1by7 chain A Region: 400 - 422 Aligned: 21 Modelled: 23 Confidence: 49.2% Identity: 33% Fold: Serpins Superfamily: Serpins Family: Serpins Phyre2 PDB 1sng chain A Region: 400 - 422 Aligned: 22 Modelled: 18 Confidence: 47.0% Identity: 32% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cog4826: serine protease inhibitor; PDBTitle: structure of a thermophilic serpin in the native state Phyre2 PDB 1q40 chain C Region: 387 - 413 Aligned: 27 Modelled: 27 Confidence: 40.2% Identity: 30% PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex Phyre2 PDB 1q42 chain A Region: 387 - 413 Aligned: 27 Modelled: 27 Confidence: 38.5% Identity: 30% Fold: Cystatin-like Superfamily: NTF2-like Family: NTF2-like Phyre2 PDB 2oay chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 27.9% Identity: 13% PDB header:immune system,hydrolase inhibitor Chain: A: PDB Molecule:plasma protease c1 inhibitor; PDBTitle: crystal structure of latent human c1-inhibitor Phyre2 PDB 3le2 chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 27.2% Identity: 43% PDB header:hydrolase Chain: A: PDB Molecule:serpin-zx; PDBTitle: structure of arabidopsis atserpin1. native stressed conformation Phyre2 PDB 3ozq chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 26.8% Identity: 35% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin48; PDBTitle: crystal structure of serpin48, which is a highly specific serpin in2 the insect tenebrio molitor Phyre2 PDB 3pzf chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 25.5% Identity: 43% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin 2; PDBTitle: 1.75a resolution structure of serpin-2 from anopheles gambiae Phyre2 PDB 1af7 chain A domain 2 Region: 72 - 127 Aligned: 47 Modelled: 56 Confidence: 25.3% Identity: 23% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: Chemotaxis receptor methyltransferase CheR, C-terminal domain Phyre2 PDB 2vh4 chain B Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 25.1% Identity: 39% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:tengpin; PDBTitle: structure of a loop c-sheet serpin polymer Phyre2 PDB 1imv chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 25.0% Identity: 22% Fold: Serpins Superfamily: Serpins Family: Serpins Phyre2 PDB 2r9y chain A Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 24.9% Identity: 17% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-2-antiplasmin; PDBTitle: structure of antiplasmin Phyre2 PDB 2uv1 chain B Region: 198 - 212 Aligned: 15 Modelled: 15 Confidence: 24.7% Identity: 33% PDB header:inhibitor Chain: B: PDB Molecule:host-nuclease inhibitor protein gam; PDBTitle: hexagonal crystal form of gams from bacteriophage lambda. Phyre2 PDB 2nww chain A domain 1 Region: 77 - 186 Aligned: 101 Modelled: 110 Confidence: 23.6% Identity: 19% Fold: Proton glutamate symport protein Superfamily: Proton glutamate symport protein Family: Proton glutamate symport protein Phyre2 PDB 2dut chain C Region: 400 - 422 Aligned: 23 Modelled: 23 Confidence: 23.6% Identity: 30% PDB header:hydrolase inhibitor Chain: C: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the native conformation Phyre2 PDB 3crc chain B Region: 72 - 86 Aligned: 15 Modelled: 15 Confidence: 22.9% Identity: 33% PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response Phyre2 1 d1zbsa1 2 d1q90d_ 3 c3b8eB_ 4 c2zv6A_ 5 d1by7a_ 6 c1sngA_ 7 c1q40C_ 8 d1q42a_ 9 c2oayA_ 10 c3le2A_ 11 c3ozqA_ 12 c3pzfA_ 13 d1af7a2 14 c2vh4B_ 15 d1imva_ 16 c2r9yA_ 17 c2uv1B_ 18 d2nwwa1 19 c2dutC_ 20 c3crcB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1zbsa1 53.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 2 d1q90d_ 52.3 15 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 3 c3b8eB_ 50.2 16 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 4 c2zv6A_ 49.6 30 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin b3; PDBTitle: crystal structure of human squamous cell carcinoma antigen 1 5 d1by7a_ 49.2 33 Fold:Serpins Superfamily:Serpins Family:Serpins 6 c1sngA_ 47.0 32 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cog4826: serine protease inhibitor; PDBTitle: structure of a thermophilic serpin in the native state 7 c1q40C_ 40.2 30 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 8 d1q42a_ 38.5 30 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 9 c2oayA_ 27.9 13 PDB header:immune system,hydrolase inhibitor Chain: A: PDB Molecule:plasma protease c1 inhibitor; PDBTitle: crystal structure of latent human c1-inhibitor 10 c3le2A_ 27.2 43 PDB header:hydrolase Chain: A: PDB Molecule:serpin-zx; PDBTitle: structure of arabidopsis atserpin1. native stressed conformation 11 c3ozqA_ 26.8 35 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin48; PDBTitle: crystal structure of serpin48, which is a highly specific serpin in2 the insect tenebrio molitor 12 c3pzfA_ 25.5 43 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin 2; PDBTitle: 1.75a resolution structure of serpin-2 from anopheles gambiae 13 d1af7a2 25.3 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain 14 c2vh4B_ 25.1 39 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:tengpin; PDBTitle: structure of a loop c-sheet serpin polymer 15 d1imva_ 25.0 22 Fold:Serpins Superfamily:Serpins Family:Serpins 16 c2r9yA_ 24.9 17 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-2-antiplasmin; PDBTitle: structure of antiplasmin 17 c2uv1B_ 24.7 33 PDB header:inhibitor Chain: B: PDB Molecule:host-nuclease inhibitor protein gam; PDBTitle: hexagonal crystal form of gams from bacteriophage lambda. 18 d2nwwa1 23.6 19 Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein 19 c2dutC_ 23.6 30 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the native conformation 20 c3crcB_ 22.9 33 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 21 c3druC_ not modelled 22.8 26 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:alpha-1-antitrypsin; PDBTitle: crystal structure of gly117phe alpha1-antitrypsin 22 d1k82a1 not modelled 22.8 16 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 23 c3f5nA_ not modelled 22.6 13 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:neuroserpin; PDBTitle: structure of native human neuroserpin 24 d2b5ti1 not modelled 22.0 30 Fold:Serpins Superfamily:Serpins Family:Serpins 25 c1jmoA_ not modelled 20.9 43 PDB header:blood clotting Chain: A: PDB Molecule:heparin cofactor ii; PDBTitle: crystal structure of the heparin cofactor ii-s195a thrombin complex 26 d1jmja_ not modelled 20.3 43 Fold:Serpins Superfamily:Serpins Family:Serpins 27 c2v95A_ not modelled 19.3 26 PDB header:transport protein Chain: A: PDB Molecule:corticosteroid-binding globulin; PDBTitle: struture of corticosteroid-binding globulin in complex with2 cortisol 28 c3o8jH_ not modelled 19.2 15 PDB header:transferase Chain: H: PDB Molecule:2-methylcitrate synthase; PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium 29 d1ee8a1 not modelled 18.5 22 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 30 c3h5cA_ not modelled 17.8 26 PDB header:hydrolase inhibitor/blood clotting Chain: A: PDB Molecule:protein z-dependent protease inhibitor; PDBTitle: x-ray structure of protein z-protein z inhibitor complex 31 c2xpiE_ not modelled 17.5 50 PDB header:cell cycle Chain: E: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 32 c1zzaA_ not modelled 17.3 15 PDB header:membrane protein Chain: A: PDB Molecule:stannin; PDBTitle: solution nmr structure of the membrane protein stannin 33 c2wxxC_ not modelled 17.2 4 PDB header:hormone Chain: C: PDB Molecule:angiotensinogen; PDBTitle: crystal structure of mouse angiotensinogen in the oxidised form 34 c3ixzB_ not modelled 17.2 18 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 35 d1klva_ not modelled 16.9 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:GABARAP-like 36 d1tdza1 not modelled 16.4 26 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 37 d1k9oi_ not modelled 16.4 26 Fold:Serpins Superfamily:Serpins Family:Serpins 38 d2ezwa1 not modelled 15.9 100 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 39 c3f1sA_ not modelled 15.5 26 PDB header:hydrolase inhibitor/hydrolase Chain: A: PDB Molecule:protein z-dependent protease inhibitor; PDBTitle: crystal structure of protein z complexed with protein z-dependent2 inhibitor 40 d1seka_ not modelled 15.3 26 Fold:Serpins Superfamily:Serpins Family:Serpins 41 d2gh1a1 not modelled 15.2 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:BC2162-like 42 c3b9yA_ not modelled 14.2 17 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 43 d1u5ta1 not modelled 13.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 44 d1xqga_ not modelled 12.8 26 Fold:Serpins Superfamily:Serpins Family:Serpins 45 d1qlpa_ not modelled 12.7 26 Fold:Serpins Superfamily:Serpins Family:Serpins 46 c2ceoA_ not modelled 12.7 26 PDB header:transport Chain: A: PDB Molecule:thyroxine-binding globulin; PDBTitle: thyroxine-binding globulin complex with thyroxine 47 c2ol2A_ not modelled 12.7 57 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:plasma serine protease inhibitor; PDBTitle: high resolution structure of native pci in space group p21 48 c3ndaA_ not modelled 12.5 35 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serpin-2; PDBTitle: crystal structure of serpin from tick ixodes ricinus 49 c3djlA_ not modelled 12.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein aidb; PDBTitle: crystal structure of alkylation response protein e. coli aidb 50 c2ou2A_ not modelled 12.2 19 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3 51 c2hi9C_ not modelled 11.9 36 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of human native protein c inhibitor 52 d1lj5a_ not modelled 11.8 26 Fold:Serpins Superfamily:Serpins Family:Serpins 53 c1qmnA_ not modelled 11.5 26 PDB header:serpin Chain: A: PDB Molecule:alpha-1-antichymotrypsin; PDBTitle: alpha1-antichymotrypsin serpin in the delta conformation2 (partial loop insertion) 54 d1rzhh2 not modelled 11.2 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 55 c2zq5A_ not modelled 10.4 23 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form) 56 c1yxaB_ not modelled 10.4 26 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:serine (or cysteine) proteinase inhibitor, clade a, member PDBTitle: serpina3n, a murine orthologue of human antichymotrypsin 57 d1l9bh2 not modelled 10.3 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 58 c3if4C_ not modelled 10.1 32 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:integron cassette protein hfx_cass5; PDBTitle: structure from the mobile metagenome of north west arm2 sewage outfall: integron cassette protein hfx_cass5 59 d1atta_ not modelled 10.1 26 Fold:Serpins Superfamily:Serpins Family:Serpins 60 d2giva1 not modelled 9.9 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 61 c2givA_ not modelled 9.9 13 PDB header:transferase Chain: A: PDB Molecule:probable histone acetyltransferase myst1; PDBTitle: human myst histone acetyltransferase 1 62 d1zxoa2 not modelled 9.8 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 63 d2ozua1 not modelled 9.6 19 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 64 d1jb0f_ not modelled 9.5 21 Fold:Single transmembrane helix Superfamily:Subunit III of photosystem I reaction centre, PsaF Family:Subunit III of photosystem I reaction centre, PsaF 65 c2x0bD_ not modelled 9.3 9 PDB header:hydrolase/hormone Chain: D: PDB Molecule:angiotensinogen; PDBTitle: crystal structure of human angiotensinogen complexed with renin 66 c2wsfF_ not modelled 9.1 26 PDB header:photosynthesis Chain: F: PDB Molecule:photosystem i reaction center subunit iii, PDBTitle: improved model of plant photosystem i 67 c3f02C_ not modelled 8.8 22 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 68 c2o01F_ not modelled 8.7 24 PDB header:photosynthesis Chain: F: PDB Molecule:photosystem i reaction center subunit iii, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 69 c9paiB_ not modelled 8.6 11 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365- PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1 70 d1fy7a_ not modelled 8.5 29 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 71 c2kncB_ not modelled 8.5 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 72 c2yxhB_ not modelled 8.5 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 73 c7apiB_ not modelled 8.4 22 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 74 c3dmpD_ not modelled 8.2 19 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 75 c2h4qB_ not modelled 8.1 33 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation 76 d2rcrh2 not modelled 8.0 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 77 d1v54c_ not modelled 8.0 20 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 78 c3lo3E_ not modelled 7.9 36 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 79 c3cwbT_ not modelled 7.7 35 PDB header:oxidoreductase Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone- PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 80 c2auhB_ not modelled 7.6 33 PDB header:transferase/signaling protein Chain: B: PDB Molecule:growth factor receptor-bound protein 14; PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase 81 c1jjoE_ not modelled 7.6 22 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 82 c2oixA_ not modelled 7.2 12 PDB header:hydrolase Chain: A: PDB Molecule:xanthomonas outer protein d; PDBTitle: xanthomonas xopd c470a mutant 83 d1im8a_ not modelled 7.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein HI0319 (YecO) 84 d2e74b1 not modelled 7.0 14 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 85 d1vzsa_ not modelled 7.0 25 Fold:Mitochondrial ATP synthase coupling factor 6 Superfamily:Mitochondrial ATP synthase coupling factor 6 Family:Mitochondrial ATP synthase coupling factor 6 86 c2d7cD_ not modelled 6.9 27 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 87 c1hleB_ not modelled 6.8 50 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 88 d2clyc1 not modelled 6.7 25 Fold:Mitochondrial ATP synthase coupling factor 6 Superfamily:Mitochondrial ATP synthase coupling factor 6 Family:Mitochondrial ATP synthase coupling factor 6 89 d1g2913 not modelled 6.6 80 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 90 d1uura2 not modelled 6.6 31 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:STAT DNA-binding domain 91 c1oy8A_ not modelled 6.6 13 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 92 c2k42B_ not modelled 6.4 42 PDB header:signaling protein Chain: B: PDB Molecule:espfu; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector 93 c1zxoB_ not modelled 6.4 24 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 94 c3fghA_ not modelled 6.3 50 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 95 d1y1la_ not modelled 6.3 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 96 c2qasA_ not modelled 6.3 28 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 97 c2xa0C_ not modelled 6.3 33 PDB header:apoptosis Chain: C: PDB Molecule:apoptosis regulator bax; PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide 98 c2z6vA_ not modelled 6.2 27 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium 99 d2nysa1 not modelled 6.2 22 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0