Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	K	L	I	N	S	V	Q	N	Y	A	W	G	S	K	T	A	L	T	E	L	Y	G	M	E	N	P	S	S	Q	P	M	A	E	L	W	M	G	A	H	P	K	S	S	S	R	V	Q	N	A	A	G	D	I	V	S	L	R	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																			?		?	?		?																					?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	E	S	D	K	S	T	L	L	G	E	A	V	A	K	R	F	G	E	L	P	F	L	F	K	V	L	C	A	A	Q	P	L	S	I	Q	V	H	P	N	K	H	N	S	E	I	G	F	A	K	E	N	A	A	G	I	P	M	D
Secondary structure
SS confidence
Disorder																																																	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	E	R	N	Y	K	D	P	N	H	K	P	E	L	V	F	A	L	T	P	F	L	A	M	N	A	F	R	E	F	S	E	I	V	S	L	L	Q	P	V	A	G	A	H	P	A	I	A	H	F	L	Q	Q	P	D	A	E	R	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	E	L	F	A	S	L	L	N	M	Q	G	E	E	K	S	R	A	L	A	I	L	K	S	A	L	D	S	Q	Q	G	E	P	W	Q	T	I	R	L	I	S	E	F	Y	P	E	D	S	G	L	F	S	P	L	L	L	N	V	V	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	N	P	G	E	A	M	F	L	F	A	E	T	P	H	A	Y	L	Q	G	V	A	L	E	V	M	A	N	S	D	N	V	L	R	A	G	L	T	P	K	Y	I	D	I	P	E	L	V	A	N	V	K	F	E	A	K	P	A	N	Q
Secondary structure
SS confidence
Disorder																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	L	T	Q	P	V	K	Q	G	A	E	L	D	F	P	I	P	V	D	D	F	A	F	S	L	H	D	L	S	D	K	E	T	T	I	S	Q	Q	S	A	A	I	L	F	C	V	E	G	D	A	T	L	W	K	G	S	Q	Q	L	Q
Secondary structure
SS confidence
Disorder							?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Sequence		L	K	P	G	E	S	A	F	I	A	A	N	E	S	P	V	T	V	K	G	H	G	R	L	A	R	V	Y	N	K	L
Secondary structure
SS confidence
Disorder																														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3h1y chain A Region: 1 - 391 Aligned: 389 Modelled: 391 Confidence: 100.0% Identity: 87% PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) Phyre2 PDB 1pmi chain A Region: 1 - 390 Aligned: 377 Modelled: 390 Confidence: 100.0% Identity: 32% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Type I phosphomannose isomerase Phyre2 PDB 1qwr chain A Region: 3 - 388 Aligned: 296 Modelled: 295 Confidence: 100.0% Identity: 26% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Type I phosphomannose isomerase Phyre2 PDB 1zx5 chain A domain 1 Region: 1 - 391 Aligned: 291 Modelled: 306 Confidence: 100.0% Identity: 22% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Type I phosphomannose isomerase Phyre2 PDB 3rns chain A Region: 237 - 390 Aligned: 132 Modelled: 140 Confidence: 98.9% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 1sfn chain A Region: 237 - 390 Aligned: 146 Modelled: 154 Confidence: 98.8% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sef chain A Region: 237 - 388 Aligned: 144 Modelled: 152 Confidence: 98.8% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis Phyre2 PDB 1sef chain A Region: 237 - 388 Aligned: 144 Modelled: 152 Confidence: 98.8% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1rc6 chain A Region: 237 - 388 Aligned: 137 Modelled: 152 Confidence: 98.7% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sq4 chain A Region: 237 - 390 Aligned: 146 Modelled: 154 Confidence: 98.6% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 2d40 chain A domain 1 Region: 237 - 389 Aligned: 145 Modelled: 153 Confidence: 98.6% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3h7y chain A Region: 237 - 389 Aligned: 141 Modelled: 153 Confidence: 98.5% Identity: 11% PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form Phyre2 PDB 1y3t chain A domain 1 Region: 237 - 389 Aligned: 144 Modelled: 153 Confidence: 98.5% Identity: 21% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 2d40 chain C Region: 237 - 389 Aligned: 145 Modelled: 153 Confidence: 98.5% Identity: 11% PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 Phyre2 PDB 2phd chain A domain 1 Region: 237 - 390 Aligned: 147 Modelled: 154 Confidence: 98.3% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3myx chain A Region: 239 - 389 Aligned: 144 Modelled: 147 Confidence: 98.2% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution Phyre2 PDB 2cau chain A Region: 228 - 389 Aligned: 162 Modelled: 162 Confidence: 98.1% Identity: 19% PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean Phyre2 PDB 2eaa chain B Region: 228 - 388 Aligned: 161 Modelled: 161 Confidence: 98.1% Identity: 18% PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 Phyre2 PDB 3bu7 chain A Region: 237 - 389 Aligned: 144 Modelled: 153 Confidence: 98.1% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi Phyre2 PDB 3bu7 chain A domain 1 Region: 237 - 389 Aligned: 144 Modelled: 153 Confidence: 98.1% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 1 c3h1yA_ 2 d1pmia_ 3 d1qwra_ 4 d1zx5a1 5 c3rnsA_ 6 d1sfna_ 7 c1sefA_ 8 d1sefa_ 9 d1rc6a_ 10 d1sq4a_ 11 d2d40a1 12 c3h7yA_ 13 d1y3ta1 14 c2d40C_ 15 d2phda1 16 c3myxA_ 17 c2cauA_ 18 c2eaaB_ 19 c3bu7A_ 20 d3bu7a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3h1yA_ 100.0 87 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 2 d1pmia_ 100.0 32 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 3 d1qwra_ 100.0 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 4 d1zx5a1 100.0 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 5 c3rnsA_ 98.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 6 d1sfna_ 98.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 7 c1sefA_ 98.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 8 d1sefa_ 98.8 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 9 d1rc6a_ 98.7 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 10 d1sq4a_ 98.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 11 d2d40a1 98.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 12 c3h7yA_ 98.5 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 13 d1y3ta1 98.5 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 14 c2d40C_ 98.5 11 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 15 d2phda1 98.3 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 16 c3myxA_ 98.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 17 c2cauA_ 98.1 19 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 18 c2eaaB_ 98.1 18 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 19 c3bu7A_ 98.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 20 d3bu7a1 98.1 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 21 c2vqaC_ not modelled 98.1 15 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 22 c2pfwB_ not modelled 98.1 12 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 23 c2ozjB_ not modelled 98.0 16 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 24 d1j58a_ not modelled 98.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 25 c3lwcA_ not modelled 97.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 26 c3s7eB_ not modelled 97.9 16 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 27 d1yhfa1 not modelled 97.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 28 c3fjsC_ not modelled 97.7 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 29 d1juha_ not modelled 97.7 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 30 c1uijA_ not modelled 97.7 22 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 31 d2pyta1 not modelled 97.6 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 32 c2q30C_ not modelled 97.6 8 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 33 c3ibmB_ not modelled 97.6 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 34 c3bcwB_ not modelled 97.6 11 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 35 c2gu9B_ not modelled 97.5 12 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 36 c2oa2A_ not modelled 97.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 37 d1dgwa_ not modelled 97.3 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 38 c2o8qA_ not modelled 97.3 10 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 39 d1vj2a_ not modelled 97.3 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 40 d1v70a_ not modelled 97.3 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 41 d1y9qa2 not modelled 97.3 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 42 c3jzvA_ not modelled 97.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 43 c3d82A_ not modelled 97.2 16 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 44 d1uika1 not modelled 97.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 45 c2vpvA_ not modelled 97.1 17 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 46 d2b8ma1 not modelled 97.1 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 47 d1uija1 not modelled 97.1 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 48 d2f4pa1 not modelled 97.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 49 d1o5ua_ not modelled 97.1 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 50 c3h8uA_ not modelled 97.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 51 d1o4ta_ not modelled 97.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 52 d1lr5a_ not modelled 97.0 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 53 c3qacA_ not modelled 96.9 15 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 54 c3i7dB_ not modelled 96.9 13 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 55 c3kgzA_ not modelled 96.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 56 d1yfua1 not modelled 96.9 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 57 c2qnkA_ not modelled 96.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase; PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase 58 c3l2hD_ not modelled 96.8 13 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 59 c3cewA_ not modelled 96.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 60 c2i45C_ not modelled 96.7 20 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 61 c3es4B_ not modelled 96.6 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 62 c2fqpD_ not modelled 96.6 16 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 63 d2phla1 not modelled 96.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 64 c3ehkC_ not modelled 96.4 12 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 65 d2phla2 not modelled 96.3 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 66 c3o14B_ not modelled 96.3 14 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 67 d2bnma2 not modelled 96.2 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 68 c3kscD_ not modelled 96.1 11 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 69 d1fxza1 not modelled 96.1 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 70 c3ht2A_ not modelled 96.0 20 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 71 c2oziA_ not modelled 96.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 72 c2e9qA_ not modelled 95.9 15 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 73 c2y0oA_ not modelled 95.9 26 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 74 c1cauB_ not modelled 95.9 20 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 75 c2opkC_ not modelled 95.8 8 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 76 c3kglB_ not modelled 95.8 9 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 77 d2arca_ not modelled 95.5 8 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 78 c1fxzC_ not modelled 95.5 11 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 79 d1od5a1 not modelled 95.4 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 80 c3c3vA_ not modelled 95.4 12 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 81 d1uija2 not modelled 95.2 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 82 d1uika2 not modelled 95.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 83 d1fxza2 not modelled 95.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 84 d1od5a2 not modelled 94.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 85 c2d5fB_ not modelled 94.5 11 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 86 d2et1a1 not modelled 94.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 87 d1j3pa_ not modelled 94.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 88 c2qdrA_ not modelled 94.1 13 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution 89 d1zvfa1 not modelled 94.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 90 d1x82a_ not modelled 93.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 91 c3kv4A_ not modelled 93.1 21 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 92 c3k3nA_ not modelled 93.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 93 c3kv5D_ not modelled 93.0 21 PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine 94 c2qjvB_ not modelled 92.7 18 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 95 c3pu3A_ not modelled 92.7 16 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 96 c2yu1A_ not modelled 92.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 97 d1vrba1 not modelled 91.9 33 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 98 c3kvaA_ not modelled 91.8 21 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 99 d1xrua1 not modelled 91.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 100 c1ywkE_ not modelled 91.6 10 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 101 d1ywka1 not modelled 91.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 102 c3uyjA_ not modelled 91.6 32 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 103 c3hqxA_ not modelled 91.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 104 d1zrra1 not modelled 91.4 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 105 d2oyza1 not modelled 90.7 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 106 c3al6A_ not modelled 90.7 26 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 107 c3eo6B_ not modelled 90.5 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 108 c3n9mC_ not modelled 90.5 26 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 109 c2bnoA_ not modelled 90.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 110 c3mpbA_ not modelled 90.1 32 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 111 c3k2oB_ not modelled 90.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 112 c3esgA_ not modelled 89.5 12 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of hutd from pseudomonas fluorescens sbw25 113 d1tq5a1 not modelled 89.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 114 c2xdvA_ not modelled 88.7 29 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 115 d1h2ka_ not modelled 86.6 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 116 c2xxzA_ not modelled 85.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain 117 c3es1A_ not modelled 82.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 118 c2vecA_ not modelled 81.7 20 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 119 c1y9qA_ not modelled 81.3 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 120 d1ylla1 not modelled 80.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:PA5104-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0