Email l.a.kelley@imperial.ac.uk Description P08369 Date Wed Jan 25 15:20:13 GMT 2012 Unique Job ID 6947354f1d6119b9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1hnga1 46.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 2 c2kr6A_ 45.3 31 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 3 d1v54c_ 36.6 27 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 4 c1q8hA_ 32.5 45 PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin 5 d1q8ha_ 32.5 45 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 6 d1ikpa1 30.5 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Exotoxin A, N-terminal domain 7 c3k3gA_ 29.9 21 PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea 8 c3kp9A_ 26.5 10 PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase 9 d1hnfa1 26.3 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 10 d1q3ma_ 25.3 45 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 11 c2vesA_ 21.5 17 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor 12 d1oria_ 21.2 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Arginine methyltransferase 13 c3nzkB_ 20.3 17 PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor 14 d1qlec_ 20.0 23 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 15 c2yboA_ 19.9 21 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah 16 d1e2wa1 19.4 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 17 d1g47a1 18.3 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 18 d1yvra1 17.0 33 Fold:alpha-alpha superhelix Superfamily:TROVE domain-like Family:TROVE domain-like 19 d1vf5c1 16.9 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 20 d1k0ha_ 16.7 9 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 21 c3o44G_ not modelled 15.9 18 PDB header:toxin Chain: G: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya) heptameric2 pore 22 c1xezA_ not modelled 15.6 18 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound 23 c1e2vB_ not modelled 15.3 12 PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii 24 c3c5oD_ not modelled 15.2 9 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:upf0311 protein rpa1785; PDBTitle: crystal structure of the conserved protein of unknown function rpa17852 from rhodopseudomonas palustris 25 c2v1lA_ not modelled 14.8 23 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein 26 c2p8zS_ not modelled 14.7 63 PDB header:translation Chain: S: PDB Molecule:elongation factor tu-b; PDBTitle: fitted structure of adpr-eef2 in the 80s:adpr-2 eef2:gdpnp:sordarin cryo-em reconstruction 27 c1q90A_ not modelled 14.4 12 PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 28 c2rddB_ not modelled 13.7 6 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 29 c1ikqA_ not modelled 13.6 18 PDB header:transferase Chain: A: PDB Molecule:exotoxin a; PDBTitle: pseudomonas aeruginosa exotoxin a, wild type 30 d1ci3m1 not modelled 13.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 31 c3g7gG_ not modelled 13.4 17 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0311 protein ca_c3321; PDBTitle: crystal structure of the protein with unknown function from2 clostridium acetobutylicum atcc 824 32 d1tu2b1 not modelled 12.6 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 33 c2w56B_ not modelled 12.6 20 PDB header:unknown function Chain: B: PDB Molecule:vc0508; PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island 34 d1hcza1 not modelled 11.9 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 35 c3dwuA_ not modelled 11.8 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:elongation factor tu-b; PDBTitle: transition-state model conformation of the switch i region2 fitted into the cryo-em map of the eef2.80s.alf4.gdp3 complex 36 c3demB_ not modelled 11.6 6 PDB header:hydrolase Chain: B: PDB Molecule:complement factor masp-3; PDBTitle: cub1-egf-cub2 domain of human masp-1/3 37 c2e75C_ not modelled 11.6 15 PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 38 d1iwga8 not modelled 11.5 13 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 39 c2k9pA_ not modelled 11.5 25 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 40 d3c8ya2 not modelled 11.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 41 d1v97a1 not modelled 10.5 46 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 42 d1jb0l_ not modelled 10.5 27 Fold:Photosystem I reaction center subunit XI, PsaL Superfamily:Photosystem I reaction center subunit XI, PsaL Family:Photosystem I reaction center subunit XI, PsaL 43 c1ctmA_ not modelled 10.5 14 PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation 44 d1mtyg_ not modelled 10.3 27 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 45 d3cx5e2 not modelled 9.8 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 46 c2k6zA_ not modelled 9.8 25 PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14) 47 d1m56c_ not modelled 9.6 15 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 48 d1mhyg_ not modelled 9.5 33 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 49 c2nvoA_ not modelled 9.4 33 PDB header:rna binding protein Chain: A: PDB Molecule:ro sixty-related protein, rsr; PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein 50 c2gutA_ not modelled 9.1 25 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 51 c3lrcC_ not modelled 8.9 11 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 52 c1dnuB_ not modelled 8.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:myeloperoxidase; PDBTitle: structural analyses of human myeloperoxidase-thiocyanate complex 53 c2oarA_ not modelled 8.7 17 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 54 d1k92a2 not modelled 8.6 30 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 55 c2iv1J_ not modelled 8.4 36 PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase 56 c1orhA_ not modelled 8.4 13 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 1; PDBTitle: structure of the predominant protein arginine methyltransferase prmt1 57 c2jxmB_ not modelled 8.2 12 PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex 58 d1x9la_ not modelled 8.1 25 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 59 c1tu2B_ not modelled 7.8 15 PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures 60 d1vava_ not modelled 7.7 25 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Alginate lyase 61 d2i5nl1 not modelled 7.7 14 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 62 c3c25A_ not modelled 7.6 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 63 c2l4wA_ not modelled 7.4 29 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the xanthomonas virb7 64 d1k8ba_ not modelled 7.4 18 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 65 d2f41a1 not modelled 7.3 15 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:PaaI/YdiI-like 66 d1t3qa1 not modelled 7.1 20 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 67 c2kqtD_ not modelled 7.1 26 PDB header:transport protein Chain: D: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 68 c2kqtA_ not modelled 7.1 26 PDB header:transport protein Chain: A: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 69 c2kqtB_ not modelled 7.1 26 PDB header:transport protein Chain: B: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 70 c2kqtC_ not modelled 7.1 26 PDB header:transport protein Chain: C: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 71 d1mv8a1 not modelled 7.1 36 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 72 d1nt0a2 not modelled 7.1 13 Fold:CUB-like Superfamily:Spermadhesin, CUB domain Family:Spermadhesin, CUB domain 73 c2lhuA_ not modelled 7.0 50 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 74 c2yvxD_ not modelled 7.0 17 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 75 d2axth1 not modelled 6.9 28 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 76 d2oiea1 not modelled 6.9 58 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 77 c3o0rB_ not modelled 6.8 6 PDB header:immune system/oxidoreductase Chain: B: PDB Molecule:nitric oxide reductase subunit b; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 78 d1zxia1 not modelled 6.8 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 79 c1nyjC_ not modelled 6.8 28 PDB header:viral protein Chain: C: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 80 c1mp6A_ not modelled 6.8 28 PDB header:membrane protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: structure of the transmembrane region of the m2 protein h+2 channel by solid state nmr spectroscopy 81 c1nyjB_ not modelled 6.8 28 PDB header:viral protein Chain: B: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 82 c1nyjA_ not modelled 6.8 28 PDB header:viral protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 83 c1nyjD_ not modelled 6.8 28 PDB header:viral protein Chain: D: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 84 c3pojA_ not modelled 6.7 7 PDB header:hydrolase Chain: A: PDB Molecule:mannan-binding lectin serine protease 1; PDBTitle: crystal structure of masp-1 cub2 domain bound to ethylamine 85 d2c5ra1 not modelled 6.7 25 Fold:Phage replication organizer domain Superfamily:Phage replication organizer domain Family:Phage replication organizer domain 86 d1jroa1 not modelled 6.6 50 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 87 c1ds5F_ not modelled 6.6 45 PDB header:transferase Chain: F: PDB Molecule:casein kinase, beta chain; PDBTitle: dimeric crystal structure of the alpha subunit in complex2 with two beta peptides mimicking the architecture of the3 tetrameric protein kinase ck2 holoenzyme. 88 c2q4pA_ not modelled 6.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 89 d2a3qa1 not modelled 6.6 32 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 90 c2q9lA_ not modelled 6.4 42 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 91 c2jttD_ not modelled 6.3 13 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 92 d2axti1 not modelled 6.3 23 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 93 c3nfgG_ not modelled 6.3 34 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49; PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5 94 c3s88J_ not modelled 6.3 20 PDB header:immune system/viral protein Chain: J: PDB Molecule:envelope glycoprotein; PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6 95 c3dh4A_ not modelled 6.3 8 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 96 c2f3xA_ not modelled 6.2 15 PDB header:gene regulation Chain: A: PDB Molecule:transcription factor fapr; PDBTitle: crystal structure of fapr (in complex with effector)- a2 global regulator of fatty acid biosynthesis in b. subtilis 97 c2qmaB_ not modelled 6.1 25 PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus 98 c3rceA_ not modelled 6.1 14 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 99 c1yvrA_ not modelled 6.1 33 PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen