Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP69826
DateThu Jan 5 12:12:09 GMT 2012
Unique Job ID686b397af55d4a6d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qnqD_
Top template information
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Confidence and coverage
Confidence:100.0% Coverage: 76%
353 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
461 residues (100%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYL
Secondary structure 









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Disorder  ????























































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   .........70.........80.........90.........100.........110.........120
Sequence  LPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALE
Secondary structure 







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Disorder 













?














?


??























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   .........130.........140.........150.........160.........170.........180
Sequence  KRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSV
Secondary structure 



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?






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   .........190.........200.........210.........220.........230.........240
Sequence  INEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMS
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????
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   .........250.........260.........270.........280.........290.........300
Sequence  KRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGS
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Disorder 

????





















































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   .........310.........320.........330.........340.........350.........360
Sequence  IFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMK
Secondary structure 










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??????????




???????????
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   .........370.........380.........390.........400.........410.........420
Sequence  QEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVV
Secondary structure 





















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Disorder  ??????????
??

??


?
?













??




















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   .........430.........440.........450.........460..
Sequence  THASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH
Secondary structure 










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Disorder 




































?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qnq chain D

3D model

Region: 1 - 354
Aligned: 353
Modelled: 354
Confidence: 100.0%
Identity: 12%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2

PDB 1vkr chain A

3D model

Region: 368 - 462
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 42%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2

PDB 1vkr chain A

3D model

Region: 368 - 462
Aligned: 95
Modelled: 95
Confidence: 99.8%
Identity: 42%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii

Phyre2

PDB 3czc chain A

3D model

Region: 372 - 456
Aligned: 85
Modelled: 85
Confidence: 99.5%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans

Phyre2

PDB 1tvm chain A

3D model

Region: 362 - 461
Aligned: 97
Modelled: 100
Confidence: 98.9%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2

PDB 1iib chain A

3D model

Region: 371 - 460
Aligned: 89
Modelled: 90
Confidence: 98.0%
Identity: 20%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2

PDB 2kyr chain A

3D model

Region: 374 - 461
Aligned: 88
Modelled: 88
Confidence: 97.9%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2

PDB 2l2q chain A

3D model

Region: 372 - 460
Aligned: 88
Modelled: 89
Confidence: 97.4%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi

Phyre2

PDB 2r48 chain A domain 1

3D model

Region: 374 - 448
Aligned: 75
Modelled: 75
Confidence: 97.2%
Identity: 21%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2

PDB 3nbm chain A

3D model

Region: 372 - 420
Aligned: 48
Modelled: 49
Confidence: 97.1%
Identity: 10%
PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Phyre2

PDB 2r4q chain A domain 1

3D model

Region: 374 - 448
Aligned: 73
Modelled: 75
Confidence: 96.8%
Identity: 19%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2

PDB 3rof chain A

3D model

Region: 371 - 458
Aligned: 88
Modelled: 88
Confidence: 96.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa;
PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa

Phyre2

PDB 2gi4 chain A

3D model

Region: 370 - 462
Aligned: 93
Modelled: 93
Confidence: 96.4%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase;
PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.

Phyre2

PDB 3jvi chain A

3D model

Region: 372 - 459
Aligned: 88
Modelled: 88
Confidence: 96.2%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica

Phyre2

PDB 2cwd chain A

3D model

Region: 372 - 459
Aligned: 88
Modelled: 88
Confidence: 96.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8

Phyre2

PDB 1d1q chain A

3D model

Region: 372 - 459
Aligned: 88
Modelled: 88
Confidence: 95.1%
Identity: 24%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: Phosphotyrosine protein phosphatases I
Family: Low-molecular-weight phosphotyrosine protein phosphatases

Phyre2

PDB 1u2p chain A

3D model

Region: 372 - 459
Aligned: 88
Modelled: 88
Confidence: 94.6%
Identity: 30%
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution

Phyre2

PDB 1x9i chain A

3D model

Region: 353 - 421
Aligned: 66
Modelled: 69
Confidence: 94.5%
Identity: 15%
Fold: SIS domain
Superfamily: SIS domain
Family: double-SIS domain

Phyre2

PDB 3sqn chain B

3D model

Region: 372 - 459
Aligned: 78
Modelled: 88
Confidence: 94.5%
Identity: 13%
PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis

Phyre2

PDB 1zgg chain A

3D model

Region: 372 - 415
Aligned: 44
Modelled: 44
Confidence: 94.5%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis

Phyre2
1

c3qnqD_
2

d1vkra_
3

c1vkrA_
4

c3czcA_
5

c1tvmA_
6

d1iiba_
7

c2kyrA_
8

c2l2qA_
9

d2r48a1
10

c3nbmA_
11

d2r4qa1
12

c3rofA_
13

c2gi4A_
14

c3jviA_
15

c2cwdA_
16

d1d1qa_
17

c1u2pA_
18

d1x9ia_
19

c3sqnB_
20

c1zggA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qnqD_



100.0 12 PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
2d1vkra_



99.8 42 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
3c1vkrA_



99.8 42 PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
4c3czcA_



99.5 24 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
5c1tvmA_



98.9 15 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
6d1iiba_



98.0 20 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
7c2kyrA_



97.9 14 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
8c2l2qA_



97.4 22 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
9d2r48a1



97.2 21 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
10c3nbmA_



97.1 10 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
11d2r4qa1



96.8 19 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
12c3rofA_



96.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa;
PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa
13c2gi4A_



96.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase;
PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
14c3jviA_



96.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
15c2cwdA_



96.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
16d1d1qa_



95.1 24 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
17c1u2pA_



94.6 30 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution
18d1x9ia_



94.5 15 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
19c3sqnB_



94.5 13 PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis
20c1zggA_



94.5 27 PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
21d5pnta_



not modelled 92.4 24 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
22d1y1la_



not modelled 91.4 23 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
23d1dg9a_



not modelled 91.4 23 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
24c2l18A_



not modelled 90.4 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: an arsenate reductase in the phosphate binding state
25c3b9yA_



not modelled 89.3 15 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
26c1y80A_



not modelled 88.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica
27c2wmyH_



not modelled 88.6 17 PDB header:hydrolase
Chain: H: PDB Molecule:putative acid phosphatase wzb;
PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate.
28c3c3jA_



not modelled 88.4 19 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
29c2a3nA_



not modelled 88.1 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution
30d1jf8a_



not modelled 87.7 15 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
31c3g68A_



not modelled 87.4 10 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
32c3tbfA_



not modelled 86.9 15 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase
PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.
33c3i0zB_



not modelled 85.9 16 PDB header:isomerase
Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution
34c2amlB_



not modelled 83.7 17 PDB header:transferase
Chain: B: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution
35d1jl3a_



not modelled 82.6 17 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
36c3odpA_



not modelled 82.0 21 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution
37c1jxaA_



not modelled 77.5 17 PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
38d1moqa_



not modelled 77.5 16 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
39d1r9ja3



not modelled 76.9 16 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
40d1vima_



not modelled 74.4 19 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
41c3b3jA_



not modelled 73.3 27 PDB header:transferase
Chain: A: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: the 2.55 a crystal structure of the apo catalytic domain of2 coactivator-associated arginine methyl transferase i(carm1:28-507,3 residues 28-146 and 479-507 not ordered)
42c3fj1A_



not modelled 73.1 19 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution
43c2zj3A_



not modelled 72.4 15 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
44c3euaD_



not modelled 71.8 12 PDB header:isomerase
Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution
45c2decA_



not modelled 71.7 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:325aa long hypothetical protein;
PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3
46d1gpra_



not modelled 70.5 12 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
47d1glaf_



not modelled 68.9 18 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
48d1ccwa_



not modelled 65.0 14 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
49d1p8aa_



not modelled 65.0 20 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
50c3knzA_



not modelled 61.9 20 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution
51d2gpra_



not modelled 60.9 19 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
52c3fkjA_



not modelled 60.4 18 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution
53c2fekA_



not modelled 60.3 12 PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
54c2xhzC_



not modelled 57.8 16 PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
55c2e6kB_



not modelled 57.8 10 PDB header:transferase
Chain: B: PDB Molecule:transketolase;
PDBTitle: x-ray structure of thermus thermopilus hb8 tt0505
56d2f3ga_



not modelled 57.2 17 Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
57d1ycga1



not modelled 56.6 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
58c3etnD_



not modelled 54.9 15 PDB header:isomerase
Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule
PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution
59c2an1D_



not modelled 53.6 18 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
60d1otha2



not modelled 49.0 8 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
61c2otcA_



not modelled 48.9 18 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine
62c2v7eB_



not modelled 48.6 24 PDB header:transferase
Chain: B: PDB Molecule:histone-arginine methyltransferase carm1;
PDBTitle: crystal structure of coactivator-associated arginine2 methyltransferase 1 (carm1), unliganded
63d1pvva2



not modelled 47.1 16 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
64d1jkea_



not modelled 46.4 9 Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
65c2kncA_



not modelled 45.9 18 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
66d3bula2



not modelled 45.7 11 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
67d1g6q1_



not modelled 44.3 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
68c2puwA_



not modelled 44.0 17 PDB header:transferase
Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate
PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans
69d1j5xa_



not modelled 43.8 13 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
70d1yb3a1



not modelled 43.8 12 Fold:YktB/PF0168-like
Superfamily:YktB/PF0168-like
Family:PF0168-like
71c1wv9B_



not modelled 43.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
72d1m3sa_



not modelled 42.7 19 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
73c2w37A_



not modelled 42.2 14 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic;
PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
74d1vlva2



not modelled 40.5 12 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
75d2naca2



not modelled 40.3 31 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
76d1duvg2



not modelled 39.5 18 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
77c3ko7E_



not modelled 39.1 8 PDB header:hydrolase
Chain: E: PDB Molecule:d-tyrosyl-trna(tyr) deacylase;
PDBTitle: dtd from plasmodium falciparum in complex with d-lysine
78c1fvoB_



not modelled 38.9 10 PDB header:transferase
Chain: B: PDB Molecule:ornithine transcarbamylase;
PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate
79c3q98A_



not modelled 38.5 16 PDB header:transferase
Chain: A: PDB Molecule:transcarbamylase;
PDBTitle: structure of ygew encoded protein from e. coli
80c3shoA_



not modelled 38.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
81c3hd6A_



not modelled 38.0 14 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
82d1dxha2



not modelled 36.6 12 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
83d1yt8a4



not modelled 36.6 22 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
84c2kncB_



not modelled 35.1 17 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
85c1vlvA_



not modelled 34.9 12 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
86c1ortD_



not modelled 33.5 12 PDB header:transferase
Chain: D: PDB Molecule:ornithine transcarbamoylase;
PDBTitle: ornithine transcarbamoylase from pseudomonas aeruginosa
87c2pv7B_



not modelled 32.5 27 PDB header:isomerase, oxidoreductase
Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm)
PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
88c3fxaA_



not modelled 32.2 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
89c3updA_



not modelled 31.0 12 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus
90c2okvC_



not modelled 30.8 9 PDB header:hydrolase
Chain: C: PDB Molecule:probable d-tyrosyl-trna(tyr) deacylase 1;
PDBTitle: c-myc dna unwinding element binding protein
91d1jeoa_



not modelled 30.8 21 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
92c2dboA_



not modelled 30.0 11 PDB header:hydrolase
Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase;
PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus
93c2yybA_



not modelled 28.8 41 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1606;
PDBTitle: crystal structure of ttha1606 from thermus thermophilus hb8
94c2hnbA_



not modelled 27.9 26 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
95d1gpua3



not modelled 27.5 14 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
96d1j7ga_



not modelled 26.7 4 Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
97d1okga2



not modelled 26.3 5 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
98d2fyta1



not modelled 26.2 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
99c2o7jA_



not modelled 26.0 7 PDB header:sugar binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic
PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose
100d1vmea1



not modelled 25.5 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
101d1ml4a2



not modelled 25.2 8 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
102d2gk3a1



not modelled 25.0 38 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
103c3lvuB_



not modelled 24.9 14 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
104c3t38B_



not modelled 24.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1'
105d1wy7a1



not modelled 24.1 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ta1320-like
106c2ohiB_



not modelled 24.1 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
107d1e5da1



not modelled 23.7 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
108c1ml4A_



not modelled 23.5 9 PDB header:transferase
Chain: A: PDB Molecule:aspartate transcarbamoylase;
PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi
109d1f3la_



not modelled 22.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
110c3eshB_



not modelled 22.2 32 PDB header:hydrolase
Chain: B: PDB Molecule:protein similar to metal-dependent hydrolase;
PDBTitle: crystal structure of a probable metal-dependent hydrolase2 from staphylococcus aureus. northeast structural genomics3 target zr314
111d2oara1



not modelled 22.2 12 Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
112c3s3lB_



not modelled 22.0 24 PDB header:transferase
Chain: B: PDB Molecule:cerj;
PDBTitle: crystal structure of cerj from streptomyces tendae
113d7reqa2



not modelled 21.9 13 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
114d1ekxa2



not modelled 20.7 19 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0