Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.
Sequence		M	V	K	K	T	I	A	A	I	F	S	V	L	V	L	S	T	V	L	T	A	C	N	T	T	R	G	V	G	E	D	I	S	D	G	G	N	A	I	S	G	A	A	T	K	A	Q	Q
Secondary structure
SS confidence
Disorder		?																						?														?			?	?					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1w2w chain A Region: 18 - 24 Aligned: 7 Modelled: 7 Confidence: 11.4% Identity: 86% PDB header:isomerase Chain: A: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits Phyre2 PDB 2g9l chain A Region: 26 - 35 Aligned: 10 Modelled: 10 Confidence: 6.9% Identity: 50% PDB header:antibiotic Chain: A: PDB Molecule:gaegurin-4; PDBTitle: the high-resolution solution conformation of an2 antimicrobial peptide gaegurin 4 and its mode of membrane3 interaction Phyre2 1 c1w2wA_ 2 c2g9lA_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1w2wA_ 11.4 86 PDB header:isomerase Chain: A: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 2 c2g9lA_ 6.9 50 PDB header:antibiotic Chain: A: PDB Molecule:gaegurin-4; PDBTitle: the high-resolution solution conformation of an2 antimicrobial peptide gaegurin 4 and its mode of membrane3 interaction

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0