Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	N	L	A	L	T	T	L	L	L	P	F	I	G	A	L	V	V	S	F	S	P	Q	R	R	A	A	E	W	G	V	L	F	A	A	L	T	T	L	C	M	L	S	L	I	S	A	F	Y	Q	A	D	K	V	A	V	T	L	T
Secondary structure
SS confidence
Disorder		?	?	?																						?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	V	N	V	G	D	V	A	L	F	G	L	V	I	D	R	V	S	T	L	I	L	F	V	V	V	F	L	G	L	L	V	T	I	Y	S	T	G	Y	L	T	D	K	N	R	E	H	P	H	N	G	T	N	R	Y	Y	A	F	L	L
Secondary structure
SS confidence
Disorder					?		?	?																																			?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	F	I	G	A	M	A	G	L	V	L	S	S	T	L	L	G	Q	L	L	F	F	E	I	T	G	G	C	S	W	A	L	I	S	Y	Y	Q	S	D	K	A	Q	R	S	A	L	K	A	L	L	I	T	H	I	G	S	L	G	L	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	A	A	A	T	L	F	L	Q	T	G	T	F	A	L	S	A	M	S	E	L	H	G	D	A	R	Y	L	V	Y	G	G	I	L	F	A	A	W	G	K	S	A	Q	L	P	M	Q	A	W	L	P	D	A	M	E	A	P	T	P	I
Secondary structure
SS confidence
Disorder																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	A	Y	L	H	A	A	S	M	V	K	V	G	V	Y	I	F	A	R	A	I	I	D	G	G	N	I	P	H	V	I	G	G	V	G	M	V	M	A	L	V	T	I	L	Y	G	F	L	M	Y	L	P	Q	Q	D	M	K	R	L	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	W	S	T	I	T	Q	L	G	W	M	F	F	G	L	S	L	S	I	F	G	S	R	L	A	L	E	G	S	I	A	Y	I	V	N	H	A	F	A	K	S	L	F	F	L	V	A	G	A	L	S	Y	S	C	G	T	R	L	L	P
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		R	L	R	G	V	L	H	T	L	P	L	P	G	V	G	F	C	V	A	A	L	A	I	T	G	V	P	P	F	N	G	F	F	S	K	F	P	L	F	A	A	G	F	A	L	S	V	E	Y	W	I	L	L	P	A	M	I	L	L	M
Secondary structure
SS confidence
Disorder			?	?																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Sequence		I	E	S	V	A	S	F	A	W	F	I	R	W	F	G	R	V	V	P	G	K	P	S	E	A	V	A	D	A	A	P	L	P	G	S	M	R	L	V	L	I	V	L	I	V	M	S	L	I	S	S	V	I	A	A	T	W	L	Q
Secondary structure
SS confidence
Disorder																					?			?	?	?	?	?	?	?	?	?	?	?																					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rko chain L Region: 3 - 479 Aligned: 457 Modelled: 477 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain M Region: 4 - 479 Aligned: 459 Modelled: 476 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain N Region: 2 - 479 Aligned: 453 Modelled: 473 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 3rko chain K Region: 115 - 203 Aligned: 89 Modelled: 89 Confidence: 61.3% Identity: 20% PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 2l3i chain A Region: 290 - 301 Aligned: 12 Modelled: 12 Confidence: 33.3% Identity: 50% PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide Phyre2 PDB 1a6q chain A domain 1 Region: 371 - 405 Aligned: 35 Modelled: 35 Confidence: 24.6% Identity: 26% Fold: Another 3-helical bundle Superfamily: Protein serine/threonine phosphatase 2C, C-terminal domain Family: Protein serine/threonine phosphatase 2C, C-terminal domain Phyre2 PDB 3r24 chain A Region: 227 - 235 Aligned: 9 Modelled: 9 Confidence: 14.9% Identity: 22% PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible Phyre2 PDB 1s1q chain A Region: 224 - 239 Aligned: 16 Modelled: 16 Confidence: 14.6% Identity: 31% Fold: UBC-like Superfamily: UBC-like Family: UEV domain Phyre2 PDB 1n9w chain A domain 2 Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 14.5% Identity: 63% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 1n9w chain A Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 14.5% Identity: 63% PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus Phyre2 PDB 2kse chain A Region: 77 - 156 Aligned: 64 Modelled: 64 Confidence: 14.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c Phyre2 PDB 2k21 chain A Region: 80 - 115 Aligned: 36 Modelled: 36 Confidence: 13.9% Identity: 28% PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c Phyre2 PDB 3bju chain B Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 13.8% Identity: 50% PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Phyre2 PDB 1r6r chain A Region: 370 - 396 Aligned: 27 Modelled: 27 Confidence: 13.7% Identity: 30% Fold: Flavivirus capsid protein C Superfamily: Flavivirus capsid protein C Family: Flavivirus capsid protein C Phyre2 PDB 1r6r chain A Region: 370 - 396 Aligned: 27 Modelled: 27 Confidence: 13.7% Identity: 30% PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold Phyre2 PDB 3c25 chain A Region: 226 - 231 Aligned: 6 Modelled: 6 Confidence: 13.4% Identity: 50% PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna Phyre2 PDB 1b8a chain B Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 12.9% Identity: 63% PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Phyre2 PDB 1wyd chain B Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 12.6% Identity: 63% PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii Phyre2 PDB 3fq6 chain A Region: 377 - 395 Aligned: 19 Modelled: 19 Confidence: 12.5% Identity: 42% PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi Phyre2 PDB 1x55 chain A Region: 385 - 392 Aligned: 8 Modelled: 8 Confidence: 12.4% Identity: 50% PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue Phyre2 1 c3rkoL_ 2 c3rkoM_ 3 c3rkoN_ 4 c3rkoK_ 5 c2l3iA_ 6 d1a6qa1 7 c3r24A_ 8 d1s1qa_ 9 d1n9wa2 10 c1n9wA_ 11 c2kseA_ 12 c2k21A_ 13 c3bjuB_ 14 d1r6ra_ 15 c1r6rA_ 16 c3c25A_ 17 c1b8aB_ 18 c1wydB_ 19 c3fq6A_ 20 c1x55A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoL_ 100.0 32 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoM_ 100.0 19 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 19 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 61.3 20 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 c2l3iA_ 33.3 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 6 d1a6qa1 24.6 26 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 7 c3r24A_ 14.9 22 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 8 d1s1qa_ 14.6 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 9 d1n9wa2 14.5 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 10 c1n9wA_ 14.5 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 11 c2kseA_ 14.0 19 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 12 c2k21A_ 13.9 28 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 13 c3bjuB_ 13.8 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 14 d1r6ra_ 13.7 30 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 15 c1r6rA_ 13.7 30 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 16 c3c25A_ 13.4 50 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 17 c1b8aB_ 12.9 63 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 18 c1wydB_ 12.6 63 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 19 c3fq6A_ 12.5 42 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi 20 c1x55A_ 12.4 50 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 21 c1e22A_ not modelled 12.3 50 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 22 c2xgtB_ not modelled 12.3 38 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 23 c2kncA_ not modelled 11.8 0 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 24 d1o8bb1 not modelled 11.7 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 25 c1asyA_ not modelled 11.6 50 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 26 c3e9hB_ not modelled 11.0 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 27 c3m4qA_ not modelled 10.8 38 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 28 c1efwA_ not modelled 10.8 50 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 29 d2gf4a1 not modelled 10.2 17 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 30 c3mesB_ not modelled 10.2 31 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 31 c1ceuA_ not modelled 9.9 25 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 32 c2voyK_ not modelled 9.7 14 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 33 d1l0wa3 not modelled 9.7 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 34 d1c0aa3 not modelled 9.4 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 35 c2i3fA_ not modelled 9.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 36 d3d37a2 not modelled 9.4 36 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 37 c1eqrC_ not modelled 9.2 50 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 38 d1b8aa2 not modelled 9.2 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 39 d1eova2 not modelled 9.1 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 40 c3i7fA_ not modelled 9.1 38 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 41 c2ejbA_ not modelled 9.0 40 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 42 d1lgha_ not modelled 9.0 29 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 43 c2re3A_ not modelled 9.0 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 44 c3rpfC_ not modelled 8.9 50 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 45 c2hg5D_ not modelled 8.8 10 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 46 c3na2C_ not modelled 8.8 25 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 47 d1sfka_ not modelled 8.7 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 48 d1sfkb_ not modelled 8.7 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 49 c2uwjG_ not modelled 8.7 32 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 50 d1unca_ not modelled 8.6 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 51 c2jwaA_ not modelled 8.6 15 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 52 d1yu8x1 not modelled 8.5 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 53 c2p04B_ not modelled 8.4 14 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 54 d1unda_ not modelled 8.3 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 55 c3g1zB_ not modelled 8.1 38 PDB header:ligase Chain: B: PDB Molecule:putative lysyl-trna synthetase; PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium 56 c1m93A_ not modelled 8.1 15 PDB header:viral protein Chain: A: PDB Molecule:serine proteinase inhibitor 2; PDBTitle: 1.65 a structure of cleaved viral serpin crma 57 d1swxa_ not modelled 8.0 13 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 58 d1sbza_ not modelled 7.9 40 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 59 d2axth1 not modelled 7.9 10 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 60 d2axti1 not modelled 7.8 17 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 61 c2pjmA_ not modelled 7.8 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 62 d1oqwa_ not modelled 7.8 20 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 63 d1r89a1 not modelled 7.8 15 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 64 d2q7ra1 not modelled 7.6 21 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 65 d1nnha_ not modelled 7.5 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 66 d2b1xa1 not modelled 7.4 40 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 67 d2f05a1 not modelled 7.4 30 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 68 d1qzpa_ not modelled 7.4 21 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 69 c3kv0A_ not modelled 7.3 33 PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp) 70 c2l3xA_ not modelled 7.3 21 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 71 d2qam31 not modelled 7.2 9 Fold:L35p-like Superfamily:L35p-like Family:Ribosomal protein L35p 72 d1m0sa1 not modelled 7.2 45 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 73 c3zquA_ not modelled 7.2 30 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 74 c2zylA_ not modelled 7.1 40 PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis 75 d1zvpa1 not modelled 7.0 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 76 c2k6nA_ not modelled 7.0 22 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 77 c2qieB_ not modelled 7.0 50 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 78 c3cu4A_ not modelled 6.9 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 79 d2cosa1 not modelled 6.9 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 80 c1m0sA_ not modelled 6.9 28 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 81 c1lkzB_ not modelled 6.9 19 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 82 c2kwtA_ not modelled 6.9 27 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 83 d1jhda1 not modelled 6.9 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 84 d1yu5x1 not modelled 6.8 33 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 85 c3bs7A_ not modelled 6.8 13 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 86 d1p9qc3 not modelled 6.8 33 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 87 d1o7na1 not modelled 6.8 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 88 d1ulia1 not modelled 6.7 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 89 d1wqla1 not modelled 6.7 20 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 90 d1fm0d_ not modelled 6.7 50 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 91 d2ha9a1 not modelled 6.7 23 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:SP0239-like 92 c3gteB_ not modelled 6.7 20 PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron 93 c2q1kA_ not modelled 6.6 44 PDB header:chaperone Chain: A: PDB Molecule:asce; PDBTitle: cyrstal structure of asce from aeromonas hydrophilla 94 d1gdva_ not modelled 6.6 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 95 d1ujsa_ not modelled 6.6 11 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 96 c3acgA_ not modelled 6.6 50 PDB header:hydrolase Chain: A: PDB Molecule:beta-1,4-endoglucanase; PDBTitle: crystal structure of carbohydrate-binding module family 282 from clostridium josui cel5a in complex with cellobiose 97 c1w2lA_ not modelled 6.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 98 c3gkqB_ not modelled 6.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1 99 d1vzva_ not modelled 6.5 29 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0