Email l.a.kelley@imperial.ac.uk Description P52627 Date Thu Jan 5 12:05:54 GMT 2012 Unique Job ID 65c1e91743c659e1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1a0pa1 92.5 23 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 2 c1a0pA_ 89.3 24 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 3 c1crxA_ 84.9 12 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 4 c3lysC_ 79.2 19 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 5 c2keyA_ 77.7 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c 6 c1ma7A_ 77.4 11 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 7 c2oxoA_ 73.5 12 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase 8 d1f44a1 72.1 14 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 9 c2khqA_ 71.0 14 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 10 c3nrwA_ 63.9 15 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 11 c3axtA_ 46.7 17 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 12 d2dula1 39.9 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 13 c2kkpA_ 39.1 20 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 14 d1m4za_ 38.9 20 Fold:SH3-like barrel Superfamily:BAH domain Family:BAH domain 15 c2fvuA_ 34.3 28 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: structure of the yeast sir3 bah domain 16 c2kiwA_ 31.4 5 PDB header:dna binding protein Chain: A: PDB Molecule:int protein; PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166). 17 d1jgta2 30.3 32 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 18 c2kkvA_ 29.9 14 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 19 c1pbyA_ 28.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 20 c1jmxA_ 25.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 21 d1k3ka_ not modelled 24.6 17 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 22 d2cora1 not modelled 23.3 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 23 d2dara1 not modelled 21.5 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 c1m1zB_ not modelled 21.3 30 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 25 c2kd1A_ not modelled 19.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 26 d2c9wa1 not modelled 17.3 44 Fold:SOCS box-like Superfamily:SOCS box-like Family:SOCS box-like 27 c2p7vA_ not modelled 16.6 15 PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 28 d2ct1a1 not modelled 13.2 31 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 29 c1x6aA_ not modelled 13.0 18 PDB header:protein binding Chain: A: PDB Molecule:lim domain kinase 2; PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2) 30 c1l6nA_ not modelled 12.4 18 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein 31 c2l76A_ not modelled 11.7 15 PDB header:transcription Chain: A: PDB Molecule:nfatc2-interacting protein; PDBTitle: solution nmr structure of human nfatc2ip ubiquitin-like domain,2 nfatc2ip_244_338, nesg target ht65a/ocsp target hs00387_244_338/sgc-3 toronto 32 c2a3vA_ not modelled 11.6 14 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 33 d2fk4a1 not modelled 11.4 22 Fold:E6 C-terminal domain-like Superfamily:E6 C-terminal domain-like Family:E6 C-terminal domain-like 34 d1p7da_ not modelled 11.2 8 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 35 d2ctda2 not modelled 10.7 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 36 c2corA_ not modelled 10.7 30 PDB header:structural protein Chain: A: PDB Molecule:pinch protein; PDBTitle: solution structure of the third lim domain of particularly2 interesting new cys-his protein 37 d1b8ta4 not modelled 10.4 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 d2yt9a1 not modelled 9.9 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 39 d1ct9a2 not modelled 9.2 22 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 40 c2dj7A_ not modelled 9.1 25 PDB header:metal binding protein Chain: A: PDB Molecule:actin-binding lim protein 3; PDBTitle: solution structure of 3rd lim domain of actin-binding lim2 protein 3 41 d1ubdc2 not modelled 8.8 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 42 c1ct9D_ not modelled 8.7 22 PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli 43 c2jhdA_ not modelled 8.6 26 PDB header:cell adhesion Chain: A: PDB Molecule:micronemal protein 1; PDBTitle: crystal structure of toxoplasma gondii micronemal protein 12 bound to 3'-sialyl-n-acetyllactosamine 44 c3h3pT_ not modelled 8.6 46 PDB header:immune system Chain: T: PDB Molecule:4e10_s0_1tjlc_004_n; PDBTitle: crystal structure of hiv epitope-scaffold 4e10 fv complex 45 c1x31D_ not modelled 8.5 13 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 46 d1vqoq1 not modelled 8.4 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 47 d1k5oa_ not modelled 8.2 14 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 48 c3rxyA_ not modelled 8.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nif3 protein; PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus 49 c3dr0B_ not modelled 8.1 38 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002 50 d1wh7a_ not modelled 7.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 51 d2dasa1 not modelled 7.9 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:TRASH domain 52 c2zkrq_ not modelled 7.7 29 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 53 c1x4uA_ not modelled 7.6 31 PDB header:lipid binding protein Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b; PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein 54 d1chma1 not modelled 7.5 42 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 55 c3q8dB_ not modelled 7.3 45 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus 56 d2izva1 not modelled 7.2 33 Fold:SOCS box-like Superfamily:SOCS box-like Family:SOCS box-like 57 d1b8ta2 not modelled 7.1 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 58 c2zonG_ not modelled 7.1 25 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 59 c2l4dA_ not modelled 7.0 38 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 60 c2zshB_ not modelled 6.9 6 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 61 d1kv9a1 not modelled 6.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 62 c3cu4A_ not modelled 6.8 63 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 63 d2gc4d1 not modelled 6.8 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 d1cyja_ not modelled 6.8 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 c2dasA_ not modelled 6.8 50 PDB header:metal transport Chain: A: PDB Molecule:zinc finger mym-type protein 5; PDBTitle: solution structure of trash domain of zinc finger mym-type2 protein 5 66 d1wfpa_ not modelled 6.7 55 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 67 c1s6wA_ not modelled 6.6 80 PDB header:antibiotic Chain: A: PDB Molecule:hepcidin; PDBTitle: solution structure of hybrid white striped bass hepcidin 68 d1dy7b1 not modelled 6.5 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 69 d1h9xa1 not modelled 6.5 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 70 c2cuqA_ not modelled 6.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2 71 c1q15A_ not modelled 6.5 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase 72 d1q15a2 not modelled 6.5 14 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 73 c2v07A_ not modelled 6.5 25 PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant 74 c3rf1B_ not modelled 6.3 30 PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168 75 c2eluA_ not modelled 6.3 36 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406 76 d1sqna_ not modelled 6.1 12 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 77 d2c8sa1 not modelled 6.1 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 78 d2a1ja1 not modelled 6.1 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 79 d1j3sa_ not modelled 6.0 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 c2cqjA_ not modelled 6.0 31 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 81 d1wffa_ not modelled 6.0 45 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 82 d1xffa_ not modelled 5.9 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 83 c3h5gB_ not modelled 5.8 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 84 c3h5fB_ not modelled 5.8 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 85 c3h5gC_ not modelled 5.8 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 86 c3h5gA_ not modelled 5.8 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 87 c3h5fA_ not modelled 5.8 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 88 c3h5fC_ not modelled 5.8 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 89 c3k35D_ not modelled 5.8 21 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 90 d1cc5a_ not modelled 5.8 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 c2x6pA_ not modelled 5.7 45 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 92 c2x6pB_ not modelled 5.7 45 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 93 c2x6pC_ not modelled 5.7 45 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 94 d1j2na_ not modelled 5.7 14 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 95 d1c6ra_ not modelled 5.7 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 96 c1jxaA_ not modelled 5.6 24 PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate 97 d1c6sa_ not modelled 5.6 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 98 d1f1fa_ not modelled 5.6 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 99 c1x4lA_ not modelled 5.4 30 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2