Email l.a.kelley@imperial.ac.uk Description P23482 Date Thu Jan 5 11:39:28 GMT 2012 Unique Job ID 6534e195bb1f7092

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoL_ 100.0 23 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoM_ 100.0 24 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 19 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 80.5 17 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 d1a6qa1 31.6 11 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 6 c2l3iA_ 28.2 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 7 d2gf4a1 18.7 23 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 8 d1o8bb1 17.2 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 9 d1s1qa_ 15.3 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 10 d1j4na_ 15.1 17 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 11 c1iijA_ 13.5 20 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 12 c3rkoF_ 13.2 16 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 13 d2q7ra1 12.8 11 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 14 d1nekd_ 12.8 16 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 15 c3na2C_ 12.7 58 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 16 d2axti1 12.6 7 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 17 d3d37a2 12.4 57 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 18 d1lgha_ 12.2 29 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 19 d1n9wa2 10.5 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 20 c1n9wA_ 10.4 50 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 21 c2p64B_ not modelled 10.4 26 PDB header:ligase Chain: B: PDB Molecule:f-box/wd repeat protein 1a; PDBTitle: d domain of b-trcp 22 c1r6rA_ not modelled 10.0 30 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 23 d1r6ra_ not modelled 10.0 30 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 24 c3bjuB_ not modelled 9.6 38 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 25 c3r24A_ not modelled 9.5 33 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 26 c2voyK_ not modelled 9.4 18 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 27 c2kncA_ not modelled 9.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 28 c2yvxD_ not modelled 9.2 17 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 29 c3c25A_ not modelled 9.2 67 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 30 c1b8aB_ not modelled 9.2 50 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 31 d1bcce2 not modelled 9.1 8 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 32 c2pjmA_ not modelled 9.0 31 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 33 d1fftb2 not modelled 9.0 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 34 c1wydB_ not modelled 9.0 50 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 35 c3rpfC_ not modelled 8.7 50 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 36 c2xgtB_ not modelled 8.6 25 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 37 d2f05a1 not modelled 8.5 33 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 38 c2hg5D_ not modelled 8.4 13 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 39 c1x55A_ not modelled 8.4 38 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 40 d2uuia1 not modelled 8.4 12 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 41 c2pnoL_ not modelled 8.4 12 PDB header:lyase Chain: L: PDB Molecule:leukotriene c4 synthase; PDBTitle: crystal structure of human leukotriene c4 synthase 42 c2p63D_ not modelled 8.3 33 PDB header:cell cycle Chain: D: PDB Molecule:cell division control protein 4; PDBTitle: suprafacial orientation of the scfcdc4 dimer accommodates multiple2 geometries for substrate ubiquitination 43 c1asyA_ not modelled 8.3 38 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 44 c1e22A_ not modelled 8.1 38 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 45 c2bg9B_ not modelled 8.0 12 PDB header:ion channel/receptor Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. 46 c4a1cK_ not modelled 7.9 27 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l27a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 47 d1ppje2 not modelled 7.9 11 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 48 c3gm1A_ not modelled 7.8 12 PDB header:transferase Chain: A: PDB Molecule:protein tyrosine kinase 2 beta; PDBTitle: crystal structure of the focal adhesion targeting (fat)2 domain of pyk2 in complex with paxillin ld4 motif-derived3 peptides 49 c3m4qA_ not modelled 7.6 25 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 50 c2kwtA_ not modelled 7.6 30 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 51 c1efwA_ not modelled 7.6 38 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 52 d1h2sb_ not modelled 7.6 27 Fold:Transmembrane helix hairpin Superfamily:Htr2 transmembrane domain-like Family:Htr2 transmembrane domain-like 53 c1h2sB_ not modelled 7.6 27 PDB header:membrane protein Chain: B: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: molecular basis of transmenbrane signalling by sensory2 rhodopsin ii-transducer complex 54 c3swyB_ not modelled 7.5 25 PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain 55 c2ojmA_ not modelled 7.5 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:moronecidin; PDBTitle: solution structure and cell selectivity of piscidin 1 and2 its analogues 56 d1k04a_ not modelled 7.4 9 Fold:Four-helical up-and-down bundle Superfamily:FAT domain of focal adhesion kinase Family:FAT domain of focal adhesion kinase 57 c3mesB_ not modelled 7.3 46 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 58 c3kdpG_ not modelled 7.3 52 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 59 c3kdpH_ not modelled 7.3 52 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 60 c3e9hB_ not modelled 7.2 38 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 61 c2uwjG_ not modelled 7.2 32 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 62 c2kseA_ not modelled 7.1 13 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 63 d1oqwa_ not modelled 7.1 28 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 64 c1uj6A_ not modelled 7.1 19 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 65 c2bg9A_ not modelled 7.0 10 PDB header:ion channel/receptor Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. 66 c1ceuA_ not modelled 7.0 17 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 67 c3kwmC_ not modelled 6.9 19 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 68 d2qam31 not modelled 6.8 9 Fold:L35p-like Superfamily:L35p-like Family:Ribosomal protein L35p 69 c3cu4A_ not modelled 6.8 8 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 70 d1zvpa1 not modelled 6.8 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 71 d1unca_ not modelled 6.8 21 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 72 d1ty9a_ not modelled 6.8 43 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 73 c2y0nE_ not modelled 6.6 29 PDB header:transcription Chain: E: PDB Molecule:male-specific lethal 1 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3 74 d1vzva_ not modelled 6.6 33 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 75 d1l0wa3 not modelled 6.5 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 76 d1sfkb_ not modelled 6.5 22 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 77 c2qieB_ not modelled 6.5 67 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 78 c1m93A_ not modelled 6.5 4 PDB header:viral protein Chain: A: PDB Molecule:serine proteinase inhibitor 2; PDBTitle: 1.65 a structure of cleaved viral serpin crma 79 d1b8aa2 not modelled 6.4 50 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 80 d1c0aa3 not modelled 6.4 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 81 d1unda_ not modelled 6.4 14 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 82 d1ubdc4 not modelled 6.3 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 83 c2eiuE_ not modelled 6.3 67 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein aq_1627; PDBTitle: crystal structure of a putative protein (aq1627) from aquifex aeolicus 84 d3cx5c2 not modelled 6.3 7 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 85 c1lkzB_ not modelled 6.2 20 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 86 c2jttD_ not modelled 6.2 38 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 87 c1eqrC_ not modelled 6.2 38 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 88 c2hfvA_ not modelled 6.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 89 d2hfva1 not modelled 6.2 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 90 c1w3zA_ not modelled 6.2 45 PDB header:complement regulator Chain: A: PDB Molecule:bbcrasp-1; PDBTitle: semet derivative of bbcrasp-1 from borrelia burgdorferi 91 d1fm0d_ not modelled 6.2 50 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 92 c3oqvA_ not modelled 6.2 22 PDB header:protein binding Chain: A: PDB Molecule:albc; PDBTitle: albc, a cyclodipeptide synthase from streptomyces noursei 93 d1eova2 not modelled 6.2 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 94 d1yu8x1 not modelled 6.2 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 95 c1zp0D_ not modelled 6.2 20 PDB header:oxidoreductase Chain: D: PDB Molecule:small cytochrome binding protein; PDBTitle: crystal structure of mitochondrial respiratory complex ii2 bound with 3-nitropropionate and 2-thenoyltrifluoroacetone 96 c3i7fA_ not modelled 6.2 25 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 97 c2lkjA_ not modelled 6.2 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails 98 d1r89a1 not modelled 6.1 15 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 99 d1iega_ not modelled 6.1 14 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin