Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	E	I	M	Q	F	V	G	R	H	P	I	L	S	I	A	W	I	A	L	L	V	A	V	L	V	T	T	F	K	S	L	T	S	K	V	K	V	I	T	R	G	E	A	T	R	L	I	N	K	E	D	A	V	V	V	D	L	R
Secondary structure
SS confidence
Disorder		?	?																																?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	R	D	D	F	R	K	G	H	I	A	G	S	I	N	L	L	P	S	E	I	K	A	N	N	V	G	E	L	E	K	H	K	D	K	P	V	I	V	V	D	G	S	G	M	Q	C	Q	E	P	A	N	A	L	T	K	A	G	F	A
Secondary structure
SS confidence
Disorder																						?	?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Sequence		Q	V	F	V	L	K	E	G	V	A	G	W	A	G	E	N	L	P	L	V	R	G	K
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yt8 chain A domain 1 Region: 22 - 143 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 22% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Multidomain sulfurtransferase (rhodanese) Phyre2 PDB 3tp9 chain B Region: 36 - 140 Aligned: 102 Modelled: 105 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains Phyre2 PDB 1yt8 chain A domain 3 Region: 34 - 142 Aligned: 106 Modelled: 106 Confidence: 99.9% Identity: 20% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Multidomain sulfurtransferase (rhodanese) Phyre2 PDB 2hhg chain A Region: 26 - 140 Aligned: 115 Modelled: 115 Confidence: 99.9% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa3614; PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009 Phyre2 PDB 1yt8 chain A Region: 22 - 143 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase; PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa Phyre2 PDB 1qxn chain A Region: 22 - 140 Aligned: 119 Modelled: 119 Confidence: 99.9% Identity: 18% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Single-domain sulfurtransferase Phyre2 PDB 3ilm chain D Region: 41 - 141 Aligned: 99 Modelled: 101 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:alr3790 protein; PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h Phyre2 PDB 2fsx chain A Region: 35 - 142 Aligned: 108 Modelled: 108 Confidence: 99.9% Identity: 31% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cog0607: rhodanese-related sulfurtransferase; PDBTitle: crystal structure of rv0390 from m. tuberculosis Phyre2 PDB 3aax chain B Region: 34 - 142 Aligned: 109 Modelled: 109 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:putative thiosulfate sulfurtransferase; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase2 cysa3 (rv3117) from mycobacterium tuberculosis: monoclinic3 form Phyre2 PDB 3gk5 chain A Region: 37 - 141 Aligned: 99 Modelled: 105 Confidence: 99.9% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized rhodanese-related protein PDBTitle: crystal structure of rhodanese-related protein (tvg0868615)2 from thermoplasma volcanium, northeast structural genomics3 consortium target tvr109a Phyre2 PDB 3eme chain A Region: 37 - 141 Aligned: 101 Modelled: 104 Confidence: 99.9% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rhodanese-like domain protein; PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus Phyre2 PDB 1e0c chain A Region: 39 - 142 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 24% PDB header:sulfurtransferase Chain: A: PDB Molecule:sulfurtransferase; PDBTitle: sulfurtransferase from azotobacter vinelandii Phyre2 PDB 1urh chain A Region: 39 - 143 Aligned: 105 Modelled: 105 Confidence: 99.9% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase; PDBTitle: the "rhodanese" fold and catalytic mechanism of2 3-mercaptopyruvate sulfotransferases: crystal structure3 of ssea from escherichia coli Phyre2 PDB 3nhv chain E Region: 39 - 143 Aligned: 104 Modelled: 105 Confidence: 99.9% Identity: 21% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:bh2092 protein; PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f Phyre2 PDB 1e0c chain A domain 1 Region: 39 - 142 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 21% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Multidomain sulfurtransferase (rhodanese) Phyre2 PDB 3k9r chain A Region: 41 - 140 Aligned: 97 Modelled: 100 Confidence: 99.9% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:alr3790 protein; PDBTitle: x-ray structure of the rhodanese-like domain of the alr3790 protein2 from anabaena sp. northeast structural genomics consortium target3 nsr437c. Phyre2 PDB 1tq1 chain A Region: 38 - 141 Aligned: 103 Modelled: 103 Confidence: 99.9% Identity: 24% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Single-domain sulfurtransferase Phyre2 PDB 1gmx chain A Region: 34 - 143 Aligned: 105 Modelled: 110 Confidence: 99.9% Identity: 20% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Single-domain sulfurtransferase Phyre2 PDB 1t3k chain A Region: 32 - 142 Aligned: 111 Modelled: 111 Confidence: 99.9% Identity: 23% Fold: Rhodanese/Cell cycle control phosphatase Superfamily: Rhodanese/Cell cycle control phosphatase Family: Cell cycle control phosphatase, catalytic domain Phyre2 PDB 3hzu chain A Region: 38 - 142 Aligned: 105 Modelled: 105 Confidence: 99.9% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis Phyre2 1 d1yt8a1 2 c3tp9B_ 3 d1yt8a3 4 c2hhgA_ 5 c1yt8A_ 6 d1qxna_ 7 c3ilmD_ 8 c2fsxA_ 9 c3aaxB_ 10 c3gk5A_ 11 c3emeA_ 12 c1e0cA_ 13 c1urhA_ 14 c3nhvE_ 15 d1e0ca1 16 c3k9rA_ 17 d1tq1a_ 18 d1gmxa_ 19 d1t3ka_ 20 c3hzuA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1yt8a1 99.9 22 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 2 c3tp9B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains 3 d1yt8a3 99.9 20 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 4 c2hhgA_ 99.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa3614; PDBTitle: structure of protein of unknown function rpa3614, possible tyrosine2 phosphatase, from rhodopseudomonas palustris cga009 5 c1yt8A_ 99.9 21 PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase; PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa 6 d1qxna_ 99.9 18 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 7 c3ilmD_ 99.9 22 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:alr3790 protein; PDBTitle: crystal structure of the alr3790 protein from anabaena sp. northeast2 structural genomics consortium target nsr437h 8 c2fsxA_ 99.9 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cog0607: rhodanese-related sulfurtransferase; PDBTitle: crystal structure of rv0390 from m. tuberculosis 9 c3aaxB_ 99.9 19 PDB header:transferase Chain: B: PDB Molecule:putative thiosulfate sulfurtransferase; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase2 cysa3 (rv3117) from mycobacterium tuberculosis: monoclinic3 form 10 c3gk5A_ 99.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized rhodanese-related protein PDBTitle: crystal structure of rhodanese-related protein (tvg0868615)2 from thermoplasma volcanium, northeast structural genomics3 consortium target tvr109a 11 c3emeA_ 99.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rhodanese-like domain protein; PDBTitle: crystal structure of rhodanese-like domain protein from2 staphylococcus aureus 12 c1e0cA_ 99.9 24 PDB header:sulfurtransferase Chain: A: PDB Molecule:sulfurtransferase; PDBTitle: sulfurtransferase from azotobacter vinelandii 13 c1urhA_ 99.9 28 PDB header:transferase Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase; PDBTitle: the "rhodanese" fold and catalytic mechanism of2 3-mercaptopyruvate sulfotransferases: crystal structure3 of ssea from escherichia coli 14 c3nhvE_ 99.9 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:bh2092 protein; PDBTitle: crystal structure of bh2092 protein from bacillus halodurans,2 northeast structural genomics consortium target bhr228f 15 d1e0ca1 99.9 21 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 16 c3k9rA_ 99.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:alr3790 protein; PDBTitle: x-ray structure of the rhodanese-like domain of the alr3790 protein2 from anabaena sp. northeast structural genomics consortium target3 nsr437c. 17 d1tq1a_ 99.9 24 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 18 d1gmxa_ 99.9 20 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 19 d1t3ka_ 99.9 23 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 20 c3hzuA_ 99.9 18 PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis 21 c1boiA_ not modelled 99.9 24 PDB header:transferase Chain: A: PDB Molecule:rhodanese; PDBTitle: n-terminally truncated rhodanese 22 c1uarA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:rhodanese; PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8 23 c3d1pA_ not modelled 99.9 19 PDB header:transferase Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase yor285w; PDBTitle: atomic resolution structure of uncharacterized protein from2 saccharomyces cerevisiae 24 d1rhsa1 not modelled 99.9 25 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 25 c3fojA_ not modelled 99.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ssp1007 from staphylococcus2 saprophyticus subsp. saprophyticus. northeast structural3 genomics target syr101a. 26 d1urha1 not modelled 99.9 26 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 27 d1uara2 not modelled 99.9 21 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 28 c2dcqA_ not modelled 99.9 18 PDB header:unknown function Chain: A: PDB Molecule:putative protein at4g01050; PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana 29 c3ippA_ not modelled 99.8 22 PDB header:transferase Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje; PDBTitle: crystal structure of sulfur-free ynje 30 c3olhA_ not modelled 99.8 21 PDB header:transferase Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase; PDBTitle: human 3-mercaptopyruvate sulfurtransferase 31 d1yt8a2 not modelled 99.8 22 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 32 c3i2vA_ not modelled 99.8 18 PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase and sulfurtransferase mocs3; PDBTitle: crystal structure of human mocs3 rhodanese-like domain 33 d1yt8a4 not modelled 99.8 18 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 34 c2k0zA_ not modelled 99.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein hp1203; PDBTitle: solution nmr structure of protein hp1203 from helicobacter pylori2 26695. northeast structural genomics consortium (nesg) target3 pt1/ontario center for structural proteomics target hp1203 35 d1uara1 not modelled 99.8 17 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 36 d1okga1 not modelled 99.8 19 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 37 c3icrA_ not modelled 99.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd 38 d1e0ca2 not modelled 99.8 16 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 39 c3g5jA_ not modelled 99.8 22 PDB header:nucleotide binding protein Chain: A: PDB Molecule:putative atp/gtp binding protein; PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630 40 d1c25a_ not modelled 99.8 20 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 41 c3f4aA_ not modelled 99.8 25 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ygr203w; PDBTitle: structure of ygr203w, a yeast protein tyrosine phosphatase2 of the rhodanese family 42 d1rhsa2 not modelled 99.8 20 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 43 c2jtqA_ not modelled 99.8 24 PDB header:transferase Chain: A: PDB Molecule:phage shock protein e; PDBTitle: rhodanese from e.coli 44 d1okga2 not modelled 99.8 22 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 45 c1okgA_ not modelled 99.8 21 PDB header:transferase Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase; PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major 46 d1ymka1 not modelled 99.8 20 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 47 c3ntaA_ not modelled 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase 48 c2j6pF_ not modelled 99.8 23 PDB header:oxidoreductase Chain: F: PDB Molecule:sb(v)-as(v) reductase; PDBTitle: structure of as-sb reductase from leishmania major 49 c2uzqE_ not modelled 99.7 20 PDB header:hydrolase Chain: E: PDB Molecule:m-phase inducer phosphatase 2; PDBTitle: protein phosphatase, new crystal form 50 c2eg4B_ not modelled 99.7 23 PDB header:transferase Chain: B: PDB Molecule:probable thiosulfate sulfurtransferase; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase 51 c3op3A_ not modelled 99.7 22 PDB header:hydrolase Chain: A: PDB Molecule:m-phase inducer phosphatase 3; PDBTitle: crystal structure of cell division cycle 25c protein isoform a from2 homo sapiens 52 d1whba_ not modelled 99.6 17 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8 53 c2vswB_ not modelled 99.6 21 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 16; PDBTitle: the structure of the rhodanese domain of the human dual2 specificity phosphatase 16 54 c2oucB_ not modelled 99.6 22 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the map kinase binding domain of mkp5 55 d2gwfa1 not modelled 99.6 21 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Ubiquitin carboxyl-terminal hydrolase 8, USP8 56 c1wv9B_ not modelled 99.6 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8 57 d1urha2 not modelled 99.6 23 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 58 c3r2uC_ not modelled 99.5 16 PDB header:hydrolase Chain: C: PDB Molecule:metallo-beta-lactamase family protein; PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col 59 d1hzma_ not modelled 99.5 18 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 60 c3flhC_ not modelled 94.7 24 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein lp_1913; PDBTitle: crystal structure of lp_1913 protein from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr140b 61 c3gxgA_ not modelled 80.6 18 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase (duf442); PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution 62 c2f46A_ not modelled 77.2 10 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution 63 d1ywfa1 not modelled 57.1 18 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Mycobacterial PtpB-like 64 c3i32A_ not modelled 54.7 13 PDB header:rna binding protein,hydrolase Chain: A: PDB Molecule:heat resistant rna dependent atpase; PDBTitle: dimeric structure of a hera helicase fragment including the c-terminal2 reca domain, the dimerization domain, and the rna binding domain 65 c3ohgA_ not modelled 53.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein from duf2233 family; PDBTitle: crystal structure of a protein with unknown function from duf22332 family (bacova_00430) from bacteroides ovatus at 1.80 a resolution 66 d1a1va2 not modelled 51.6 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 67 c1h83A_ not modelled 36.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase; PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane 68 c2b9yA_ not modelled 35.6 24 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 69 d1oywa3 not modelled 34.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 70 d1d5ra2 not modelled 32.3 12 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 71 d1nkta4 not modelled 32.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 72 d2g0ta1 not modelled 29.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 73 d1fuka_ not modelled 27.8 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 74 d1j9ia_ not modelled 27.3 29 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 75 d1pp7u_ not modelled 26.2 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:39 kda initiator binding protein, IBP39, N-terminal domain 76 c2v1xB_ not modelled 24.6 9 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase 77 d1jf8a_ not modelled 23.4 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 78 c3rh0A_ not modelled 22.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 79 d1b5qa1 not modelled 21.8 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 80 d1nw2a_ not modelled 21.5 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 81 d1djqa2 not modelled 20.8 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like 82 c3rgqA_ not modelled 20.3 13 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p 83 d1xria_ not modelled 20.3 11 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 84 d1zmaa1 not modelled 20.3 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 85 c3nbmA_ not modelled 20.1 25 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 86 c2i6oA_ not modelled 19.2 15 PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n 87 c2c46B_ not modelled 18.9 20 PDB header:transferase Chain: B: PDB Molecule:mrna capping enzyme; PDBTitle: crystal structure of the human rna guanylyltransferase and2 5'-phosphatase 88 c3gnjD_ not modelled 18.4 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 89 d1jl3a_ not modelled 18.2 11 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 90 d1p6qa_ not modelled 18.0 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 91 c2hjvB_ not modelled 17.8 11 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbpa; PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein 92 d1p5dx2 not modelled 17.7 13 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 93 c2jgnB_ not modelled 17.6 10 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: ddx3 helicase domain 94 c1e1cA_ not modelled 17.3 16 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 95 c3earA_ not modelled 17.2 12 PDB header:hydrolase Chain: A: PDB Molecule:hera; PDBTitle: novel dimerization motif in the dead box rna helicase hera: form 1,2 partial dimer 96 d2g2ja1 not modelled 16.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 97 d2b5ea4 not modelled 16.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 98 d1hv8a2 not modelled 15.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 99 c3bicA_ not modelled 15.6 18 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase

Binding site prediction

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0