Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	K	L	W	N	A	L	R	R	P	S	A	R	W	S	V	L	A	L	V	A	I	G	I	V	I	G	I	A	L	I	V	L	P	H	V	G	I	K	V	T	S	T	T	E	F	C	V	S	C	H	S	M	Q	P	V	Y	E	E
Secondary structure
SS confidence
Disorder		?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	K	Q	S	V	H	F	Q	N	A	S	G	V	R	A	E	C	H	D	C	H	I	P	P	D	I	P	G	M	V	K	R	K	L	E	A	S	N	D	I	Y	Q	T	F	I	A	H	S	I	D	T	P	E	K	F	E	A	K	R	A
Secondary structure
SS confidence
Disorder					?	?		?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	L	A	E	R	E	W	A	R	M	K	E	N	N	S	A	T	C	R	S	C	H	N	Y	D	A	M	D	H	A	K	Q	H	P	E	A	A	R	Q	M	K	V	A	A	K	D	N	Q	S	C	I	D	C	H	K	G	I	A	H	Q
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?														?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	P	D	M	S	S	G	F	R	K	Q	F	D	E	L	R	A	S	A	N	D	S	G	D	T	L	Y	S	I	D	I	K	P	I	Y	A	A	K	G	D	K	E	A	S	G	S	L	L	P	A	S	E	V	K	V	L	K	R	D	G
Secondary structure
SS confidence
Disorder							?																																?	?	?	?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	W	L	Q	I	E	I	T	G	W	T	E	S	A	G	R	Q	R	V	L	T	Q	F	P	G	K	R	I	F	V	A	S	I	R	G	D	V	Q	Q	Q	V	K	T	L	E	K	T	T	V	A	D	T	N	T	E	W	S	K	L	Q
Secondary structure
SS confidence
Disorder													?																																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	T	A	W	M	K	K	G	D	M	V	N	D	I	K	P	I	W	A	Y	A	D	S	L	Y	N	G	T	C	N	Q	C	H	G	A	P	E	I	A	H	F	D	A	N	G	W	I	G	T	L	N	G	M	I	G	F	T	S	L	D
Secondary structure
SS confidence
Disorder						?	?					?																										?	?	?	?	?	?															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Sequence		K	R	E	E	R	T	L	L	K	Y	L	Q	M	N	A	S	D	T	A	G	K	A	H	G	D	K	K	E	E	K
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j7a chain C Region: 20 - 179 Aligned: 131 Modelled: 149 Confidence: 99.9% Identity: 29% PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 1fgj chain A Region: 44 - 373 Aligned: 285 Modelled: 308 Confidence: 99.7% Identity: 18% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fgj chain A Region: 44 - 373 Aligned: 285 Modelled: 308 Confidence: 99.7% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase Phyre2 PDB 2bpb chain B Region: 321 - 374 Aligned: 54 Modelled: 54 Confidence: 98.6% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella Phyre2 PDB 1sp3 chain A Region: 45 - 241 Aligned: 195 Modelled: 197 Confidence: 98.5% Identity: 16% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2p0b chain A Region: 43 - 174 Aligned: 124 Modelled: 132 Confidence: 98.3% Identity: 17% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 1ft5 chain A Region: 45 - 215 Aligned: 136 Modelled: 138 Confidence: 98.3% Identity: 20% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2rdz chain A domain 1 Region: 43 - 174 Aligned: 120 Modelled: 120 Confidence: 98.2% Identity: 26% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs7 chain A Region: 43 - 174 Aligned: 113 Modelled: 113 Confidence: 98.1% Identity: 20% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs9 chain A Region: 43 - 174 Aligned: 113 Modelled: 113 Confidence: 98.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 1pby chain A domain 1 Region: 321 - 374 Aligned: 54 Modelled: 54 Confidence: 98.0% Identity: 20% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 1jmx chain A domain 1 Region: 319 - 374 Aligned: 56 Modelled: 56 Confidence: 97.8% Identity: 27% Fold: Cytochrome c Superfamily: Cytochrome c Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Phyre2 PDB 2fwt chain A Region: 324 - 380 Aligned: 57 Modelled: 57 Confidence: 97.7% Identity: 30% PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides Phyre2 PDB 2vr0 chain A Region: 44 - 143 Aligned: 68 Modelled: 83 Confidence: 97.7% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 3f29 chain A Region: 48 - 175 Aligned: 114 Modelled: 128 Confidence: 97.6% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 2j7a chain E Region: 44 - 143 Aligned: 68 Modelled: 83 Confidence: 97.6% Identity: 34% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 3pmq chain A Region: 44 - 175 Aligned: 106 Modelled: 132 Confidence: 97.6% Identity: 25% PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf Phyre2 PDB 1qdb chain A Region: 35 - 143 Aligned: 75 Modelled: 91 Confidence: 97.5% Identity: 27% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 40 - 164 Aligned: 82 Modelled: 89 Confidence: 97.5% Identity: 29% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1oah chain A Region: 40 - 164 Aligned: 82 Modelled: 89 Confidence: 97.5% Identity: 29% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 1w5c chain T Region: 315 - 387 Aligned: 73 Modelled: 73 Confidence: 96.3% Identity: 15% PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus Phyre2 1 c2j7aC_ 2 d1fgja_ 3 c1fgjA_ 4 c2bpbB_ 5 d1sp3a_ 6 c2p0bA_ 7 d1ft5a_ 8 d2rdza1 9 d1fs7a_ 10 c1fs9A_ 11 d1pbya1 12 d1jmxa1 13 c2fwtA_ 14 c2vr0A_ 15 c3f29A_ 16 c2j7aE_ 17 c3pmqA_ 18 d1qdba_ 19 d1oaha_ 20 c1oahA_ 21 22 23 24 25 26 27 28 29 30 31 c1w5cT_ 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j7aC_ 99.9 29 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 2 d1fgja_ 99.7 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 3 c1fgjA_ 99.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase 4 c2bpbB_ 98.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 5 d1sp3a_ 98.5 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 6 c2p0bA_ 98.3 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 7 d1ft5a_ 98.3 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 8 d2rdza1 98.2 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 9 d1fs7a_ 98.1 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 10 c1fs9A_ 98.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 11 d1pbya1 98.0 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 12 d1jmxa1 97.8 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 13 c2fwtA_ 97.7 30 PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides 14 c2vr0A_ 97.7 34 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 15 c3f29A_ 97.6 26 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 16 c2j7aE_ 97.6 34 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 17 c3pmqA_ 97.6 25 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 18 d1qdba_ 97.5 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 19 d1oaha_ 97.5 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 20 c1oahA_ 97.5 29 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 21 c1kb0A_ not modelled 97.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni 22 c3oueA_ not modelled 96.9 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 23 c2a3mA_ not modelled 96.7 26 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 24 c1pbyA_ not modelled 96.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution 25 d1mz4a_ not modelled 96.6 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 26 d1h9xa1 not modelled 96.5 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 27 c3cp5A_ not modelled 96.5 22 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: cytochrome c from rhodothermus marinus 28 d1nira1 not modelled 96.5 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 29 c3ouqA_ not modelled 96.4 21 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 30 d1i77a_ not modelled 96.3 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 31 c1w5cT_ 96.3 15 PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus 32 c1jmxA_ not modelled 96.2 26 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 33 d1e29a_ not modelled 96.2 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 34 c2zonG_ not modelled 96.2 30 PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c 35 d1e2rb1 not modelled 96.2 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 36 d1f1ca_ not modelled 96.1 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 37 d1y0pa1 not modelled 96.1 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 38 c1jrxA_ not modelled 96.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 39 c2xtsD_ not modelled 96.0 25 PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 40 d1hzua1 not modelled 96.0 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 41 c1kv9A_ not modelled 95.9 25 PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 42 d1ls9a_ not modelled 95.9 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 43 d1kv9a1 not modelled 95.9 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 44 d1ytca_ not modelled 95.9 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 45 c2zxyA_ not modelled 95.9 17 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 46 d1gyoa_ not modelled 95.9 41 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 47 d1wvec1 not modelled 95.9 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 48 d2gc4d1 not modelled 95.8 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 49 d1d4ca1 not modelled 95.8 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 50 c1nnoA_ not modelled 95.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 51 d1wada_ not modelled 95.7 32 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 52 d2ctha_ not modelled 95.7 25 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 53 d1j0pa_ not modelled 95.7 34 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 54 c1qo8A_ not modelled 95.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 55 d1h1oa2 not modelled 95.6 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 56 d1ccra_ not modelled 95.6 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 57 d1lfma_ not modelled 95.5 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 d1hj3a1 not modelled 95.5 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 59 d1wejf_ not modelled 95.5 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 60 d1yeba_ not modelled 95.5 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 61 c2d0wA_ not modelled 95.5 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome cl; PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans 62 d1ycca_ not modelled 95.5 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 63 d1fcdc1 not modelled 95.4 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 64 d1kb0a1 not modelled 95.4 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain 65 d1c75a_ not modelled 95.4 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 66 d1qo8a1 not modelled 95.4 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 67 c2w9kA_ not modelled 95.4 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 68 c3dmiA_ not modelled 95.4 23 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution 69 d1qksa1 not modelled 95.4 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 70 d1duwa_ not modelled 95.3 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 71 c2l4dA_ not modelled 95.3 16 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 72 d1c52a_ not modelled 95.3 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 73 d1m70a1 not modelled 95.3 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 74 d1ofwa_ not modelled 95.2 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 75 c2e84A_ not modelled 95.2 28 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion 76 c2zooA_ not modelled 95.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 77 d1up9a_ not modelled 95.2 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 78 d1j3sa_ not modelled 95.2 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 79 c3dr0B_ not modelled 95.2 19 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002 80 d1kx7a_ not modelled 95.1 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 81 d1dy7b1 not modelled 95.1 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase 82 d1cc5a_ not modelled 95.1 23 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 83 d1cyja_ not modelled 95.1 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 84 d1c53a_ not modelled 95.1 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 d1f1fa_ not modelled 95.0 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 86 c3a9fA_ not modelled 95.0 18 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 87 c3cu4A_ not modelled 95.0 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 88 d1m1qa_ not modelled 94.9 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 89 d1fcdc2 not modelled 94.9 12 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 90 d1hroa_ not modelled 94.8 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 91 d1aqea_ not modelled 94.8 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 92 d1cnoa_ not modelled 94.7 28 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 93 d2c8sa1 not modelled 94.7 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 94 c2v07A_ not modelled 94.7 23 PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant 95 d2cvca1 not modelled 94.7 38 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 96 d1ctja_ not modelled 94.7 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 97 c3o0rC_ not modelled 94.7 16 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 98 d1c6sa_ not modelled 94.6 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 99 c2zzsW_ not modelled 94.6 22 PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633 100 c1eysC_ not modelled 94.4 30 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 101 d1eysc_ not modelled 94.4 30 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 102 d1gdva_ not modelled 94.4 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 103 d1c6ra_ not modelled 94.2 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 104 d1m70a2 not modelled 94.2 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 105 d1dvha_ not modelled 94.1 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 106 d1co6a_ not modelled 94.0 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 107 c1w2lA_ not modelled 93.8 26 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 108 c2cvcA_ not modelled 93.8 39 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) 109 c1gq1B_ not modelled 93.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 110 c2k3vA_ not modelled 93.4 24 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 111 c2d0sA_ not modelled 93.3 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 112 d1fi3a_ not modelled 93.1 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 113 d2i5nc1 not modelled 93.1 25 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 114 c2jblC_ not modelled 93.1 25 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 115 c1fcdD_ not modelled 93.0 12 PDB header:electron transport(flavocytochrome) Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution 116 d2cy3a_ not modelled 93.0 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 117 c3m97X_ not modelled 93.0 22 PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans 118 d1qn2a_ not modelled 92.9 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 119 c1z1nX_ not modelled 92.9 29 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 120 c3cwbQ_ not modelled 92.8 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0