Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33346
DateThu Jan 5 11:51:48 GMT 2012
Unique Job ID5d0884c69ccdca6e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1uuha_
Top template information
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Link domain
Confidence and coverage
Confidence: 77.3% Coverage: 6%
76 residues ( 6% of your sequence) have been modelled with 77.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQTLGDELLQKAEKKKNI
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Disorder  ???????











?





???



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   .........70.........80.........90.........100.........110.........120
Sequence  VWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQNDSQQLLDEIVQQEGLEY
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??????????


























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   .........130.........140.........150.........160.........170.........180
Sequence  ATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQ
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????

?
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   .........190.........200.........210.........220.........230.........240
Sequence  RCADKLIAALPGINKVRRPFIALILPEKPEIANELVGLECPRTHFHSKEWLKVVANDPTA
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?????
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   .........250.........260.........270.........280.........290.........300
Sequence  VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGSLL
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?




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   .........310.........320.........330.........340.........350.........360
Sequence  VQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGYPIIE
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Disorder 





???


???????
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   .........370.........380.........390.........400.........410.........420
Sequence  DKKLPAQQKARDEYWRTLLQTLMASQPQLAAEVMPWLSTQPQSVLKSYLSAPPKPVIDGT
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Disorder  ??????????
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   .........430.........440.........450.........460.........470.........480
Sequence  DNSNLPEILVSPPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATEPARYFSTESL
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Disorder 










??
????????????

??????????













????????
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   .........490.........500.........510.........520.........530.........540
Sequence  AQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLFVQWHYYQGRVEEILNGWN
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Disorder  ?????????????????????????
????????????







??
???????????
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   .........550.........560.........570.........580.........590.........600
Sequence  SPEAQLAEQALRSGHIEALINIWENDNYSHYRPEKSVWNLYLLAQLPREMALTFWLRINE
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   .........610.........620.........630.........640.........650.........660
Sequence  KKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATELALPVAHVWRRFAAQ
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?
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   .........670.........680.........690.........700.........710.........720
Sequence  RDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQGHGELLQTVANRWQRT
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   .........730.........740.........750.........760.........770.........780
Sequence  DVWSALEQLLKQGPMDIYPARIPKAPDFWHPQMWSRPRLITNNQTVTNDALEIIGEMLRF
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???????
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   .........790.........800.........810.........820.........830.........840
Sequence  TQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARD
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   .........850.........860.........870.........880.........890.........900
Sequence  LTTQILAWPQEGKSARAVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVA
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   .........910.........920.........930.........940.........950.........960
Sequence  ENRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPR
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?






















































?
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  LRADDDQLKAPEALARLKGLKKDATQVSKNLLPRLETALRTTRRWSLADFHSLFVNHPFT
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  RLVTQRLIWGVYPANEPRCLLKAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMTAEM
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  RSEFAQLFADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWES
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???
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?
??
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  GYEDAFVYNLGEYRLVLKFSPGFNHYNVDSKALMSFRSLRVYRDNKSVTFAELDVFDLSE
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Disorder  ??

























































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   .........1210
Sequence  ALSAPDVIFH
Secondary structure 

SS confidence 









Disorder 







??
Disorder confidence 









 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1uuh chain A

3D model

Region: 73 - 166
Aligned: 76
Modelled: 94
Confidence: 77.3%
Identity: 14%
Fold: C-type lectin-like
Superfamily: C-type lectin-like
Family: Link domain

Phyre2

PDB 2pf5 chain A domain 1

3D model

Region: 61 - 122
Aligned: 59
Modelled: 62
Confidence: 57.4%
Identity: 10%
Fold: C-type lectin-like
Superfamily: C-type lectin-like
Family: Link domain

Phyre2

PDB 3u5g chain B

3D model

Region: 1091 - 1157
Aligned: 67
Modelled: 67
Confidence: 41.6%
Identity: 19%
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution

Phyre2

PDB 1oyz chain A

3D model

Region: 656 - 897
Aligned: 226
Modelled: 242
Confidence: 37.7%
Identity: 16%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: PBS lyase HEAT-like repeat

Phyre2

PDB 2nra chain C domain 1

3D model

Region: 873 - 953
Aligned: 81
Modelled: 81
Confidence: 36.2%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Replication initiation protein

Phyre2

PDB 2awn chain A domain 1

3D model

Region: 934 - 960
Aligned: 26
Modelled: 27
Confidence: 36.1%
Identity: 8%
Fold: OB-fold
Superfamily: MOP-like
Family: ABC-transporter additional domain

Phyre2

PDB 1nos chain A

3D model

Region: 1114 - 1181
Aligned: 68
Modelled: 68
Confidence: 35.2%
Identity: 22%
Fold: Nitric oxide (NO) synthase oxygenase domain
Superfamily: Nitric oxide (NO) synthase oxygenase domain
Family: Nitric oxide (NO) synthase oxygenase domain

Phyre2

PDB 2xzm chain 4

3D model

Region: 1091 - 1157
Aligned: 67
Modelled: 67
Confidence: 34.1%
Identity: 15%
PDB header:ribosome
Chain: 4: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1

Phyre2

PDB 1yzx chain B

3D model

Region: 852 - 931
Aligned: 80
Modelled: 80
Confidence: 30.6%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione2 transferase

Phyre2

PDB 1pc6 chain A

3D model

Region: 996 - 1015
Aligned: 20
Modelled: 20
Confidence: 28.7%
Identity: 10%
Fold: NinB
Superfamily: NinB
Family: NinB

Phyre2

PDB 1jjc chain B domain 1

3D model

Region: 902 - 942
Aligned: 38
Modelled: 41
Confidence: 25.9%
Identity: 21%
Fold: Putative DNA-binding domain
Superfamily: Putative DNA-binding domain
Family: Domains B1 and B5 of PheRS-beta, PheT

Phyre2

PDB 1xvl chain A domain 1

3D model

Region: 966 - 1027
Aligned: 54
Modelled: 62
Confidence: 22.5%
Identity: 17%
Fold: Chelatase-like
Superfamily: "Helical backbone" metal receptor
Family: TroA-like

Phyre2

PDB 2b0t chain A

3D model

Region: 915 - 955
Aligned: 39
Modelled: 39
Confidence: 22.4%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp isocitrate dehydrogenase;
PDBTitle: structure of monomeric nadp isocitrate dehydrogenase

Phyre2

PDB 2cyy chain A domain 1

3D model

Region: 886 - 914
Aligned: 29
Modelled: 29
Confidence: 22.4%
Identity: 17%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Lrp/AsnC-like transcriptional regulator N-terminal domain

Phyre2

PDB 1te4 chain A

3D model

Region: 766 - 846
Aligned: 76
Modelled: 81
Confidence: 21.7%
Identity: 12%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: PBS lyase HEAT-like repeat

Phyre2

PDB 1itw chain A

3D model

Region: 915 - 955
Aligned: 39
Modelled: 39
Confidence: 21.2%
Identity: 18%
Fold: Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
Family: Monomeric isocitrate dehydrogenase

Phyre2

PDB 2cg4 chain A domain 1

3D model

Region: 886 - 914
Aligned: 29
Modelled: 29
Confidence: 21.2%
Identity: 28%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Lrp/AsnC-like transcriptional regulator N-terminal domain

Phyre2

PDB 1vb5 chain A

3D model

Region: 836 - 942
Aligned: 104
Modelled: 107
Confidence: 21.0%
Identity: 16%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: IF2B-like

Phyre2

PDB 2b59 chain B domain 2

3D model

Region: 914 - 952
Aligned: 36
Modelled: 39
Confidence: 20.2%
Identity: 19%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Pre-dockerin domain

Phyre2

PDB 2dbb chain A

3D model

Region: 886 - 914
Aligned: 29
Modelled: 29
Confidence: 19.8%
Identity: 17%
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061

Phyre2
1

d1uuha_
2

d2pf5a1
3

c3u5gB_
4

d1oyza_
5

d2nrac1
6

d2awna1
7

d1nosa_
8

c2xzm4_
9

c1yzxB_
10

d1pc6a_
11

d1jjcb1
12

d1xvla1
13

c2b0tA_
14

d2cyya1
15

d1te4a_
16

d1itwa_
17

d2cg4a1
18

d1vb5a_
19

d2b59b2
20

c2dbbA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1uuha_



77.3 14 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Link domain
2d2pf5a1



57.4 10 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Link domain
3c3u5gB_



41.6 19 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s1-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
4d1oyza_



37.7 16 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
5d2nrac1



36.2 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Replication initiation protein
6d2awna1



36.1 8 Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
7d1nosa_



35.2 22 Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
8c2xzm4_



34.1 15 PDB header:ribosome
Chain: 4: PDB Molecule:40s ribosomal protein s3a;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
9c1yzxB_



30.6 23 PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione2 transferase
10d1pc6a_



28.7 10 Fold:NinB
Superfamily:NinB
Family:NinB
11d1jjcb1



25.9 21 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
12d1xvla1



22.5 17 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
13c2b0tA_



22.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp isocitrate dehydrogenase;
PDBTitle: structure of monomeric nadp isocitrate dehydrogenase
14d2cyya1



22.4 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
15d1te4a_



21.7 12 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
16d1itwa_



21.2 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Monomeric isocitrate dehydrogenase
17d2cg4a1



21.2 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
18d1vb5a_



21.0 16 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
19d2b59b2



20.2 19 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Pre-dockerin domain
20c2dbbA_



19.8 17 PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
21c3somO_



not modelled 19.6 14 PDB header:oxidoreductase
Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of human mmachc
22d2cfxa1



not modelled 19.5 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
23d1i1ga1



not modelled 19.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
24c3f6wE_



not modelled 18.8 23 PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
25c3gkuB_



not modelled 18.2 9 PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
26c1k98A_



not modelled 17.5 24 PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: adomet complex of meth c-terminal fragment
27d1sbqa_



not modelled 17.3 8 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
28c1y9qA_



not modelled 17.1 25 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
29c1i1gA_



not modelled 16.6 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
30c2wknE_



not modelled 16.5 16 PDB header:hydrolase
Chain: E: PDB Molecule:formamidase;
PDBTitle: gamma lactamase from delftia acidovorans
31d1ixsa_



not modelled 16.3 35 Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
32c3mfqB_



not modelled 16.0 11 PDB header:metal binding protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center
33c2e1cA_



not modelled 15.9 17 PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
34c2rliA_



not modelled 15.8 5 PDB header:metal transport
Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial;
PDBTitle: solution structure of cu(i) human sco2
35d2hf3a1



not modelled 15.8 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
36c2l4aA_



not modelled 15.5 17 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
37d1z67a1



not modelled 15.2 9 Fold:YidB-like
Superfamily:YidB-like
Family:YidB-like
38d1f1sa2



not modelled 15.2 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
39d1dzka_



not modelled 15.1 22 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
40c1u3fA_



not modelled 14.8 9 PDB header:ligase
Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase;
PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087)
41c3r0eC_



not modelled 14.0 15 PDB header:sugar binding protein
Chain: C: PDB Molecule:lectin;
PDBTitle: structure of remusatia vivipara lectin
42d1yt3a2



not modelled 13.9 27 Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
43d1bj7a_



not modelled 13.8 22 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
44d1a0ia1



not modelled 13.8 27 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
45c3hpbA_



not modelled 13.2 20 PDB header:protein transport
Chain: A: PDB Molecule:snx5 protein;
PDBTitle: crystal structure of snx5-px domain in p212121 space group
46c2rfpA_



not modelled 13.2 11 PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
47c3fiqA_



not modelled 12.9 22 PDB header:transport protein
Chain: A: PDB Molecule:odorant-binding protein 1f;
PDBTitle: odorant binding protein obp1
48d2d7va1



not modelled 12.6 19 Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
49c2p6tH_



not modelled 12.6 24 PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
50c3odnA_



not modelled 12.2 13 PDB header:membrane protein
Chain: A: PDB Molecule:dally-like protein;
PDBTitle: the crystal structure of drosophila dally-like protein core domain
51c3bjxB_



not modelled 12.0 26 PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
52d2phcb1



not modelled 11.6 28 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
53c2vbzA_



not modelled 11.5 28 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
54c2r73C_



not modelled 11.5 19 PDB header:transport protein
Chain: C: PDB Molecule:trichosurin;
PDBTitle: crystal structure of the possum milk whey lipocalin2 trichosurin at ph 8.2
55d1xkia_



not modelled 11.2 43 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
56c3ongA_



not modelled 11.2 15 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-activating enzyme e1-like;
PDBTitle: crystal structure of uba2ufd-ubc9: insights into e1-e2 interactions in2 sumo pathways
57d2a6ca1



not modelled 11.1 32 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
58d2f2ea1



not modelled 10.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
59d1jd0a_



not modelled 10.8 17 Fold:Carbonic anhydrase
Superfamily:Carbonic anhydrase
Family:Carbonic anhydrase
60c2kebA_



not modelled 10.8 10 PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
61c3op9A_



not modelled 10.8 26 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
62c2cfxD_



not modelled 10.8 14 PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
63d1ufma_



not modelled 10.6 0 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
64c2e4jA_



not modelled 10.6 21 PDB header:isomerase
Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase;
PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase
65c1pbyA_



not modelled 10.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
66d1mska_



not modelled 10.5 24 Fold:Methionine synthase activation domain-like
Superfamily:Methionine synthase activation domain-like
Family:Methionine synthase SAM-binding domain
67c2e7xA_



not modelled 10.5 24 PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
68d1e5pa_



not modelled 10.5 21 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
69c3ooxA_



not modelled 10.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein;
PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution
70d1rp3a1



not modelled 10.5 44 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
71c2h43A_



not modelled 10.5 23 PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of human fragment d complexed with ala-his-arg-pro-2 amide
72d1soua_



not modelled 10.4 17 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
73c6rlxA_



not modelled 10.2 44 PDB header:hormone(muscle relaxant)
Chain: A: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
74c6rlxC_



not modelled 10.2 44 PDB header:hormone(muscle relaxant)
Chain: C: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
75d2o38a1



not modelled 10.2 32 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
76c2o38A_



not modelled 10.2 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
77d1r69a_



not modelled 10.2 27 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
78c2k9qB_



not modelled 10.2 43 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of hth_xre family transcriptional2 regulator bt_p548217 from bacteroides thetaiotaomicron.3 northeast structural genomics consortium target btr244.
79c2zp2B_



not modelled 10.0 44 PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
80c2gqqB_



not modelled 10.0 17 PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
81d1sgva1



not modelled 10.0 17 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
82c3gk6A_



not modelled 9.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein vch_cass2;
PDBTitle: crystal structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass2.
83c2bnoA_



not modelled 9.9 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
84d1gm6a_



not modelled 9.8 7 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
85c3qb0C_



not modelled 9.8 19 PDB header:structural protein
Chain: C: PDB Molecule:actin-related protein 4;
PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp
86d1oh1a_



not modelled 9.8 33 Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Staphostatin
87c1ocuA_



not modelled 9.7 22 PDB header:sorting protein
Chain: A: PDB Molecule:sorting nexin;
PDBTitle: crystal structure of the yeast px-domain protein grd19p2 (sorting nexin 3) complexed to3 phosphatidylinosytol-3-phospahte.
88d2o3ia1



not modelled 9.7 14 Fold:CV3147-like
Superfamily:CV3147-like
Family:CV3147-like
89d1whza_



not modelled 9.6 19 Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
90d1hcba_



not modelled 9.5 16 Fold:Carbonic anhydrase
Superfamily:Carbonic anhydrase
Family:Carbonic anhydrase
91c1jmxA_



not modelled 9.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:amine dehydrogenase;
PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
92c2cseW_



not modelled 9.4 20 PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
93c3gknA_



not modelled 9.4 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
94d2fswa1



not modelled 9.4 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
95d2hy5a1



not modelled 9.3 33 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
96c3clcC_



not modelled 9.3 22 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
97c2jz8A_



not modelled 9.2 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bh09830;
PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
98d1c0fa1



not modelled 9.1 29 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
99c3h32A_



not modelled 9.1 23 PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha chain;
PDBTitle: crystal structure of d-dimer from human fibrin complexed with gly-his-2 arg-pro-tyr-amide

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0