Email l.a.kelley@imperial.ac.uk Description P33355 Date Thu Jan 5 11:51:57 GMT 2012 Unique Job ID 5baafe03ad778c9a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sibA_ 86.6 13 PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type 2 d1brwa1 56.9 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 3 d2tpta1 48.9 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 4 c3gh1A_ 48.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 5 c3bq9A_ 48.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 6 d1ldda_ 44.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 7 c2dsjA_ 40.1 27 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 8 d1uoua1 38.9 21 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 9 c3iz5w_ 37.3 17 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 d1o17a1 37.2 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11 c3izcw_ 35.7 20 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 12 c2fjrB_ 28.6 7 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 13 c2w1oA_ 27.8 17 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 14 c3h5qA_ 26.6 11 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 15 d2f76x1 24.1 9 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Mason-Pfizer monkey virus matrix protein 16 d1n0ya_ 23.8 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 17 c2k7bA_ 23.6 8 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 18 d1sw8a_ 23.0 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 19 d1khda1 21.2 18 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d2elca1 19.4 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 c3ctnA_ not modelled 19.2 16 PDB header:calcium-binding protein Chain: A: PDB Molecule:troponin c; PDBTitle: structure of calcium-saturated cardiac troponin c, nmr, 302 structures 22 c1wlzD_ not modelled 18.5 13 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 23 d1wlza1 not modelled 18.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 24 c1o17A_ not modelled 18.3 20 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 25 c2amiA_ not modelled 17.5 13 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 26 c3evrA_ not modelled 17.0 14 PDB header:signaling protein Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent PDBTitle: crystal structure of calcium bound monomeric gcamp2 27 d1sl7a_ not modelled 16.2 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 28 c2kdhA_ not modelled 15.5 16 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate 29 c2l98A_ not modelled 15.5 16 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of trans-resveratrol in complex with the cardiac regulatory2 protein troponin c 30 c3bjaA_ not modelled 15.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 31 c2igpA_ not modelled 14.9 14 PDB header:cell cycle Chain: A: PDB Molecule:retinoblastoma-associated protein hec; PDBTitle: crystal structure of hec1 ch domain 32 d2pq3a1 not modelled 14.7 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 33 d1j55a_ not modelled 14.2 12 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 34 c2vqcA_ not modelled 13.9 42 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 35 d2vqca1 not modelled 13.9 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 36 d1dtla_ not modelled 13.5 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 37 d1xk4c1 not modelled 13.1 15 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 38 d1djxb1 not modelled 12.5 18 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 39 d2fcea1 not modelled 12.4 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 40 c2j0fC_ not modelled 11.9 24 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 41 c2g2bA_ not modelled 11.6 15 PDB header:immune system Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: nmr structure of the human allograft inflammatory factor 1 42 d1wrka1 not modelled 11.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 43 d1fw4a_ not modelled 11.2 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 44 d1m39a_ not modelled 11.1 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 45 d1jc2a_ not modelled 11.1 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 46 c1jc2A_ not modelled 11.1 16 PDB header:structural protein Chain: A: PDB Molecule:troponin c, skeletal muscle; PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i 47 d1v8ga1 not modelled 10.7 16 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 48 c3cecA_ not modelled 10.6 18 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 49 c3oiqB_ not modelled 10.3 27 PDB header:protein binding Chain: B: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of yeast telomere protein cdc13 ob1 and the2 catalytic subunit of dna polymerase alpha pol1 50 d1r2ua_ not modelled 10.1 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 51 d1vi0a2 not modelled 9.6 14 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 52 d1n0yb_ not modelled 9.3 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 53 c3pivA_ not modelled 9.2 17 PDB header:cytokine Chain: A: PDB Molecule:interferon; PDBTitle: zebrafish interferon 1 54 d1eysh2 not modelled 9.2 47 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 55 c2fcdA_ not modelled 9.0 7 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 56 d1mzba_ not modelled 8.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 57 c2o8kA_ not modelled 8.8 12 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 58 c1otpA_ not modelled 8.8 17 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 59 c1irjG_ not modelled 8.5 12 PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps 60 c2b1uA_ not modelled 8.5 18 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 61 c2k6oA_ not modelled 7.9 29 PDB header:antimicrobial protein Chain: A: PDB Molecule:cathelicidin antimicrobial peptide; PDBTitle: human ll-37 structure 62 c1brwB_ not modelled 7.9 15 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 63 d1f54a_ not modelled 7.9 7 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 64 d1avsa_ not modelled 7.8 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 65 c2d58A_ not modelled 7.8 13 PDB header:metal binding protein Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: human microglia-specific protein iba1 66 c2jojA_ not modelled 7.8 11 PDB header:cell cycle Chain: A: PDB Molecule:centrin protein; PDBTitle: nmr solution structure of n-terminal domain of euplotes2 octocarinatus centrin 67 c3jrtA_ not modelled 7.5 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron cassette protein vpc_cass2; PDBTitle: structure from the mobile metagenome of v. paracholerae:2 integron cassette protein vpc_cass2 68 c1ih0A_ not modelled 7.4 16 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of the c-domain of human cardiac troponin c in2 complex with ca2+ sensitizer emd 57033 69 d1ih0a_ not modelled 7.4 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 70 d2csfa1 not modelled 7.1 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 71 d1q5za_ not modelled 6.7 62 Fold:Invasion protein A (SipA) , C-terminal actin binding domain Superfamily:Invasion protein A (SipA) , C-terminal actin binding domain Family:Invasion protein A (SipA) , C-terminal actin binding domain 72 c1q5zA_ not modelled 6.7 62 PDB header:cell invasion Chain: A: PDB Molecule:sipa; PDBTitle: crystal structure of the c-terminal actin binding domain of2 salmonella invasion protein a (sipa) 73 d1cmga_ not modelled 6.7 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 74 c2aaoA_ not modelled 6.7 14 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 75 c1sbjA_ not modelled 6.7 16 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the mg2+-loaded c terminal domain of2 cardiac troponin c bound to the n terminal domain of3 cardiac troponin i 76 c1scvA_ not modelled 6.7 16 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i 77 c1fi5A_ not modelled 6.7 16 PDB header:contractile protein Chain: A: PDB Molecule:protein (troponin c); PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i. 78 d1fi5a_ not modelled 6.7 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 79 d1tn4a_ not modelled 6.6 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 80 c2k2aA_ not modelled 6.6 15 PDB header:contractile protein Chain: A: PDB Molecule:troponin c; PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1 81 d1oqpa_ not modelled 6.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 82 c1ozsA_ not modelled 6.4 11 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i 83 d1xrxa1 not modelled 6.4 67 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 84 c1xrxD_ not modelled 6.4 67 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 85 d1jw2a_ not modelled 6.3 19 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 86 d2p5ka1 not modelled 6.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 87 d1tiza_ not modelled 6.1 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 88 c2e8mA_ not modelled 6.0 27 PDB header:signaling protein Chain: A: PDB Molecule:epidermal growth factor receptor kinase PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8 89 d1lj9a_ not modelled 5.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 90 d1a03a_ not modelled 5.8 10 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 91 c2a4jA_ not modelled 5.7 13 PDB header:structural protein Chain: A: PDB Molecule:centrin 2; PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein 92 d1jjcb2 not modelled 5.7 19 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 93 c2ktgA_ not modelled 5.5 9 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 94 d1b4aa1 not modelled 5.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 95 c2bcwC_ not modelled 5.4 20 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: coordinates of the n-terminal domain of ribosomal protein2 l11,c-terminal domain of ribosomal protein l7/l12 and a3 portion of the g' domain of elongation factor g, as fitted4 into cryo-em map of an escherichia coli 70s*ef-5 g*gdp*fusidic acid complex 96 d1fi4a1 not modelled 5.4 22 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 97 d1f9na1 not modelled 5.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 98 d1np8a_ not modelled 5.3 12 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 99 d1ap4a_ not modelled 5.2 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like