Email l.a.kelley@imperial.ac.uk Description P39829 Date Thu Jan 5 12:00:53 GMT 2012 Unique Job ID 5823a77f3a0672ae

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3lazB_ 100.0 98 PDB header:lyase Chain: B: PDB Molecule:d-galactarate dehydratase; PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073 2 c3k3sG_ 99.9 36 PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. 3 c1qd1A_ 72.7 14 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 4 c3degC_ 59.7 19 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 5 d2nu7b1 54.9 9 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 6 c1tt9B_ 53.2 17 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 7 c3cwcB_ 52.7 14 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 8 d2zdra1 51.0 18 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 9 c3g8rA_ 48.7 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 10 c3b8hA_ 41.9 13 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 11 d2f69a2 41.2 29 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 12 c3tr5C_ 40.0 17 PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii 13 d1csha_ 38.3 14 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 14 c3izq1_ 37.9 15 PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome 15 c3frnA_ 34.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flagellar protein flga; PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8 16 c2elfA_ 32.2 13 PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei 17 c3cnlA_ 31.8 16 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima 18 c3m7oB_ 30.8 11 PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine 19 c2ywfA_ 30.0 12 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 20 d1puja_ 28.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 21 d1c8ba_ not modelled 28.0 23 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease 22 c1g7tA_ not modelled 27.3 18 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp 23 d1vlia1 not modelled 27.1 17 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 24 c3bicA_ not modelled 25.8 18 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase 25 c2j69D_ not modelled 25.3 11 PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp 26 c1vliA_ not modelled 24.4 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 27 c1xqhE_ not modelled 23.7 23 PDB header:transferase Chain: E: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: crystal structure of a ternary complex of the2 methyltransferase set9 (also known as set7/9) with a p533 peptide and sah 28 c3ka5A_ not modelled 23.5 40 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 29 c3h6lA_ not modelled 23.1 15 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2; PDBTitle: methyltransferase domain of human set domain-containing protein 2 30 c3k2tA_ not modelled 22.7 40 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 31 c3f9xA_ not modelled 22.4 38 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd8; PDBTitle: structural insights into lysine multiple methylation by set2 domain methyltransferases, set8-y334f / h4-lys20me2 /3 adohcy 32 c1xuzA_ not modelled 22.3 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 33 c1zo1I_ not modelled 21.5 15 PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex 34 c2bm0A_ not modelled 21.4 18 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 35 c3m5uA_ not modelled 21.3 13 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 36 c3opeA_ not modelled 21.2 46 PDB header:transferase Chain: A: PDB Molecule:probable histone-lysine n-methyltransferase ash1l; PDBTitle: structural basis of auto-inhibitory mechanism of histone2 methyltransferase 37 c1x5bA_ not modelled 21.0 11 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 38 c2z64C_ not modelled 21.0 14 PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex 39 d1h3ia2 not modelled 20.9 20 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 40 c3bo5A_ not modelled 20.7 31 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: crystal structure of methyltransferase domain of human histone-lysine2 n-methyltransferase setmar 41 c3ooiA_ not modelled 20.3 46 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4 PDBTitle: crystal structure of human histone-lysine n-methyltransferase nsd1 set2 domain in complex with s-adenosyl-l-methionine 42 d1umqa_ not modelled 19.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 43 c1umqA_ not modelled 19.4 10 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 44 d1ml9a_ not modelled 19.3 38 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 45 d1elka_ not modelled 18.8 12 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 46 c2xexA_ not modelled 18.5 17 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 47 d1mvha_ not modelled 17.6 31 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 48 c1mvhA_ not modelled 17.6 31 PDB header:transferase Chain: A: PDB Molecule:cryptic loci regulator 4; PDBTitle: structure of the set domain histone lysine2 methyltransferase clr4 49 d1dvpa1 not modelled 17.2 13 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 50 d1nuia2 not modelled 16.8 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 51 c2r3aA_ not modelled 16.2 23 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 52 c1s0uA_ not modelled 16.0 15 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo 53 d1eucb1 not modelled 15.8 9 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 54 d2ctsa_ not modelled 15.8 15 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 55 c2k4zA_ not modelled 14.7 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 56 c3cb4D_ not modelled 14.3 19 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 57 d1csca_ not modelled 13.7 15 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 58 d1txna_ not modelled 13.7 14 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 59 c3s8pA_ not modelled 13.6 46 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1; PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine 60 d1ucva_ not modelled 12.7 23 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 61 c3by5A_ not modelled 12.7 30 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 62 d3by5a1 not modelled 12.7 30 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 63 c2qptA_ not modelled 12.3 16 PDB header:endocytosis Chain: A: PDB Molecule:eh domain-containing protein-2; PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling 64 c3mu3A_ not modelled 12.2 11 PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva 65 d1ynya1 not modelled 12.0 22 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 66 d1wjta_ not modelled 11.7 13 Fold:N-cbl like Superfamily:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Family:Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 67 d2olra1 not modelled 11.7 15 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 68 c3simA_ not modelled 11.7 11 PDB header:hydrolase Chain: A: PDB Molecule:protein, family 18 chitinase; PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus 69 c3nioF_ not modelled 11.4 23 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 70 d1fx0a1 not modelled 11.4 18 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 71 c2rdo7_ not modelled 11.3 15 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 72 c1e1cA_ not modelled 11.2 15 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 73 d1to6a_ not modelled 11.1 15 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 74 c1skqB_ not modelled 10.8 18 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp 75 d1fuea_ not modelled 10.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 76 d1v8qa_ not modelled 10.7 37 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 77 c3fin0_ not modelled 10.7 37 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 78 c2hdnJ_ not modelled 10.7 14 PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 79 d1hr0w_ not modelled 10.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 80 d1yv9a1 not modelled 10.3 15 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 81 d1o0ya_ not modelled 10.0 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 82 d2f23a2 not modelled 10.0 14 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 83 c3b8iF_ not modelled 9.9 18 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 84 d2py8a1 not modelled 9.9 10 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 85 c2qpwA_ not modelled 9.7 20 PDB header:transcription Chain: A: PDB Molecule:pr domain zinc finger protein 2; PDBTitle: methyltransferase domain of human pr domain-containing2 protein 2 86 d2h2ja2 not modelled 9.6 5 Fold:beta-clip Superfamily:SET domain Family:RuBisCo LSMT catalytic domain 87 c2gedB_ not modelled 9.4 18 PDB header:protein transport, signaling protein Chain: B: PDB Molecule:signal recognition particle receptor beta PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form 88 c2f5jA_ not modelled 9.4 26 PDB header:gene regulation Chain: A: PDB Molecule:mortality factor 4-like protein 1; PDBTitle: crystal structure of mrg domain from human mrg15 89 c3nipB_ not modelled 9.3 19 PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane 90 c3mmpC_ not modelled 9.2 15 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 91 d1vf5c1 not modelled 9.1 36 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 92 c2w5zA_ not modelled 8.8 27 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase hrx; PDBTitle: ternary complex of the mixed lineage leukaemia (mll1) set2 domain with the cofactor product s-adenosylhomocysteine3 and histone peptide. 93 d1z9ha1 not modelled 8.6 10 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 94 c3eoeC_ not modelled 8.5 12 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 95 c3izyP_ not modelled 8.5 12 PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 96 d1gq6a_ not modelled 8.4 28 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 97 d1pkla3 not modelled 8.1 12 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 98 d1xm3a_ not modelled 8.1 15 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 99 d1wx0a1 not modelled 8.0 60 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase