Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP80644
DateThu Jan 5 12:33:13 GMT 2012
Unique Job ID5224898d59376010

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2fzvC_
Top template information
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
Confidence and coverage
Confidence:100.0% Coverage: 90%
171 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPALKTF
Secondary structure 


























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Disorder  ?


























































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   .........70.........80.........90.........100.........110.........120
Sequence  TEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYA
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   .........130.........140.........150.........160.........170.........180
Sequence  LKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTRLDTALETFWQALHRRDVQVP
Secondary structure 



















SS confidence 



























































Disorder 

























???


























????
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   .........190.
Sequence  DLLSLRGNAHA
Secondary structure 



SS confidence 










Disorder  ??

???????
Disorder confidence 










 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fzv chain C

3D model

Region: 1 - 173
Aligned: 171
Modelled: 173
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri

Phyre2

PDB 2vzh chain A

3D model

Region: 2 - 184
Aligned: 183
Modelled: 183
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex

Phyre2

PDB 2q62 chain A

3D model

Region: 1 - 190
Aligned: 186
Modelled: 190
Confidence: 100.0%
Identity: 19%
PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti

Phyre2

PDB 2fzv chain A domain 1

3D model

Region: 1 - 173
Aligned: 171
Modelled: 173
Confidence: 100.0%
Identity: 17%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 3k1y chain E

3D model

Region: 2 - 176
Aligned: 170
Modelled: 170
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d

Phyre2

PDB 1rtt chain A

3D model

Region: 1 - 168
Aligned: 167
Modelled: 168
Confidence: 100.0%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 1nni chain 1

3D model

Region: 1 - 173
Aligned: 166
Modelled: 170
Confidence: 100.0%
Identity: 19%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 3fvw chain A

3D model

Region: 2 - 173
Aligned: 167
Modelled: 172
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.

Phyre2

PDB 1t0i chain A

3D model

Region: 1 - 172
Aligned: 167
Modelled: 172
Confidence: 100.0%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 1sqs chain A

3D model

Region: 2 - 182
Aligned: 169
Modelled: 181
Confidence: 100.0%
Identity: 15%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Hypothetical protein SP1951

Phyre2

PDB 3lcm chain B

3D model

Region: 1 - 172
Aligned: 162
Modelled: 172
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159

Phyre2

PDB 2qwx chain A domain 1

3D model

Region: 2 - 178
Aligned: 169
Modelled: 177
Confidence: 100.0%
Identity: 17%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1d4a chain A

3D model

Region: 2 - 191
Aligned: 182
Modelled: 190
Confidence: 100.0%
Identity: 15%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1qrd chain A

3D model

Region: 1 - 180
Aligned: 168
Modelled: 180
Confidence: 100.0%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1dxq chain A

3D model

Region: 2 - 180
Aligned: 167
Modelled: 179
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1t5b chain A

3D model

Region: 2 - 173
Aligned: 163
Modelled: 163
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1ydg chain A

3D model

Region: 1 - 174
Aligned: 172
Modelled: 174
Confidence: 100.0%
Identity: 12%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2

PDB 3p0r chain A

3D model

Region: 2 - 174
Aligned: 164
Modelled: 172
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne

Phyre2

PDB 2z98 chain A domain 1

3D model

Region: 2 - 173
Aligned: 163
Modelled: 163
Confidence: 99.9%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 2hpv chain A

3D model

Region: 2 - 168
Aligned: 165
Modelled: 167
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis

Phyre2
1

c2fzvC_
2

c2vzhA_
3

c2q62A_
4

d2fzva1
5

c3k1yE_
6

d1rtta_
7

d1nni1_
8

c3fvwA_
9

d1t0ia_
10

d1sqsa_
11

c3lcmB_
12

d2qwxa1
13

d1d4aa_
14

d1qrda_
15

d1dxqa_
16

d1t5ba_
17

d1ydga_
18

c3p0rA_
19

d2z98a1
20

c2hpvA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2fzvC_



100.0 19 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
2c2vzhA_



100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex
3c2q62A_



100.0 19 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
4d2fzva1



100.0 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
5c3k1yE_



100.0 27 PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d
6d1rtta_



100.0 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
7d1nni1_



100.0 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
8c3fvwA_



100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
9d1t0ia_



100.0 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
10d1sqsa_



100.0 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
11c3lcmB_



100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
12d2qwxa1



100.0 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
13d1d4aa_



100.0 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
14d1qrda_



100.0 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
15d1dxqa_



100.0 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
16d1t5ba_



100.0 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
17d1ydga_



100.0 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
18c3p0rA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
19d2z98a1



99.9 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
20c2hpvA_



99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
21c2v9cA_



not modelled 99.9 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
22c2zkiH_



not modelled 99.9 15 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
23c3b6iB_



not modelled 99.9 18 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
24c3f2vA_



not modelled 99.9 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
25d2a5la1



not modelled 99.9 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
26d1rlia_



not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein YwqN
27c3rpeA_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
28c2amjD_



not modelled 99.8 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:modulator of drug activity b;
PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7
29c3ha2B_



not modelled 99.8 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a
30d1e5da1



not modelled 99.8 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
31c3d7nA_



not modelled 99.8 14 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
32d2arka1



not modelled 99.8 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
33d1ycga1



not modelled 99.8 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
34c3eywA_



not modelled 99.8 21 PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
35c1ychD_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
36c1e5dA_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
37d1vmea1



not modelled 99.7 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
38c2ohiB_



not modelled 99.7 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
39c2q9uB_



not modelled 99.7 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
40c3fniA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
41c3hlyA_



not modelled 99.6 22 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
42c1vmeB_



not modelled 99.5 13 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
43c3klbA_



not modelled 99.5 19 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
44c3edoA_



not modelled 99.5 17 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
45d2fz5a1



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
46c3f6sI_



not modelled 99.3 18 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
47d5nula_



not modelled 99.3 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
48d1oboa_



not modelled 99.2 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
49d1ag9a_



not modelled 99.2 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
50d1czna_



not modelled 99.2 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
51d1tlla2



not modelled 99.1 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
52d1f4pa_



not modelled 99.1 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
53c2wc1A_



not modelled 99.1 14 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
54d1ykga1



not modelled 99.1 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
55d1yoba1



not modelled 99.0 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
56d1fuea_



not modelled 99.0 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
57d1bvyf_



not modelled 99.0 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
58c1bvyF_



not modelled 99.0 19 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
59c2hnbA_



not modelled 98.9 16 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
60c3hr4C_



not modelled 98.9 16 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
61d1b1ca_



not modelled 98.9 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
62d2fcra_



not modelled 98.8 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
63d1ja1a2



not modelled 98.8 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
64c1tllA_



not modelled 98.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
65c2bpoA_



not modelled 98.2 15 PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.
66c1j9zB_



not modelled 98.1 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
67c2x2oA_



not modelled 96.7 13 PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state
68d1cfza_



not modelled 96.3 17 Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Hydrogenase maturating endopeptidase HybD
69c3n39D_



not modelled 95.8 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein nrdi;
PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi
70d1rlja_



not modelled 95.3 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
71d2a9va1



not modelled 95.2 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
72d1o1ya_



not modelled 94.7 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
73d2r4qa1



not modelled 94.2 20 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
74c2kyrA_



not modelled 94.0 13 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
75d2r48a1



not modelled 92.9 18 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
76c3l7nA_



not modelled 92.1 14 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
77c2e85B_



not modelled 91.5 10 PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
78d1qdlb_



not modelled 91.3 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
79c3d8tB_



not modelled 90.6 18 PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: thermus thermophilus uroporphyrinogen iii synthase
80d1mkza_



not modelled 90.1 13 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
81c3lwzC_



not modelled 90.0 20 PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
82d1n57a_



not modelled 89.9 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
83c3nbmA_



not modelled 89.8 21 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
84c3orsD_



not modelled 89.5 14 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
85d1txga2



not modelled 89.3 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
86c2ofpB_



not modelled 89.1 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketopantoate reductase;
PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate
87c3kklA_



not modelled 88.8 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
88c3c4vB_



not modelled 88.7 17 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
89c3oy2A_



not modelled 88.6 17 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
90d1u7za_



not modelled 88.5 12 Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
91c2l2qA_



not modelled 88.3 13 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
92c3c7cB_



not modelled 87.3 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:octopine dehydrogenase;
PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
93d1ks9a2



not modelled 87.2 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
94c1p74B_



not modelled 87.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae
95d2bisa1



not modelled 86.8 22 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
96c2qzsA_



not modelled 86.5 8 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
97c1ks9A_



not modelled 86.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
98c3l83A_



not modelled 86.0 19 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
99d1n1ea2



not modelled 85.9 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
100d1rzua_



not modelled 85.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
101c3czcA_



not modelled 85.4 14 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
102c1tvmA_



not modelled 85.2 16 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
103d1jaya_



not modelled 85.2 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
104d2d1pa1



not modelled 84.1 12 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
105d1wl8a1



not modelled 84.1 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
106d1u9ca_



not modelled 83.6 9 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
107c3l4bG_



not modelled 82.9 19 PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
108c2z04A_



not modelled 82.7 16 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase atpase subunit from aquifex aeolicus
109d1ka9h_



not modelled 82.4 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
110c2z2vA_



not modelled 81.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
111d1y5ea1



not modelled 81.8 10 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
112d1iowa1



not modelled 81.6 15 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
113c3l4eA_



not modelled 80.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
114d1lssa_



not modelled 80.8 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
115d2hy5a1



not modelled 80.3 11 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
116c2gejA_



not modelled 80.3 17 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
117c1jr2A_



not modelled 80.1 17 PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
118d1jr2a_



not modelled 80.1 17 Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
119c1vkzA_



not modelled 79.9 11 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution
120d1h05a_



not modelled 79.5 13 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0