Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	V	I	R	T	E	I	E	D	V	L	I	L	E	P	R	V	F	G	D	D	R	G	F	F	Y	E	S	F	N	Q	S	A	F	E	H	I	L	G	Y	P	V	S	F	V	Q	D	N	H	S	R	S	S	K	N	V	L	R	G
Secondary structure
SS confidence
Disorder		?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	H	F	Q	R	G	E	Y	A	Q	D	K	L	V	R	C	T	H	G	A	V	F	D	V	A	V	D	I	R	P	N	S	V	S	F	G	K	W	V	G	V	L	L	S	A	D	N	K	Q	Q	L	W	I	P	K	G	F	A	H	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	L	V	L	S	D	I	A	E	F	Q	Y	K	T	T	N	Y	Y	H	P	E	S	D	C	G	I	C	W	N	D	E	R	I	A	I	D	W	P	Q	T	S	G	L	I	L	S	P	K	D	E	R	L	F	T	L	D	E	L	I	R
Secondary structure
SS confidence
Disorder																																																			?										?
Disorder confidence
		.	.	.	.	.
Sequence		L	K	L	I	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ixc chain A domain 1 Region: 1 - 185 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 34% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 2c0z chain A Region: 1 - 185 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 34% PDB header:isomerase Chain: A: PDB Molecule:novw; PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides Phyre2 PDB 2c0z chain A domain 1 Region: 1 - 185 Aligned: 184 Modelled: 185 Confidence: 100.0% Identity: 34% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 1dzr chain A Region: 1 - 179 Aligned: 179 Modelled: 179 Confidence: 100.0% Identity: 65% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 1oi6 chain A Region: 1 - 184 Aligned: 184 Modelled: 184 Confidence: 100.0% Identity: 28% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 1upi chain A Region: 1 - 185 Aligned: 183 Modelled: 185 Confidence: 100.0% Identity: 34% PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) Phyre2 PDB 2ixh chain A domain 1 Region: 1 - 178 Aligned: 177 Modelled: 178 Confidence: 100.0% Identity: 59% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 1ep0 chain A Region: 1 - 178 Aligned: 176 Modelled: 178 Confidence: 100.0% Identity: 51% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 3ryk chain B Region: 1 - 175 Aligned: 173 Modelled: 175 Confidence: 100.0% Identity: 51% PDB header:isomerase Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound Phyre2 PDB 1wlt chain A domain 1 Region: 1 - 178 Aligned: 170 Modelled: 178 Confidence: 100.0% Identity: 39% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 1nxm chain A Region: 1 - 183 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 31% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 3ejk chain A Region: 4 - 161 Aligned: 150 Modelled: 158 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution Phyre2 PDB 2zkl chain A Region: 9 - 142 Aligned: 116 Modelled: 129 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus Phyre2 PDB 2pa7 chain A domain 1 Region: 10 - 142 Aligned: 116 Modelled: 133 Confidence: 100.0% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: dTDP-sugar isomerase Phyre2 PDB 2vqa chain C Region: 54 - 143 Aligned: 79 Modelled: 90 Confidence: 98.0% Identity: 18% PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. Phyre2 PDB 1j58 chain A Region: 54 - 143 Aligned: 78 Modelled: 86 Confidence: 97.9% Identity: 19% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 2phl chain A domain 2 Region: 46 - 139 Aligned: 88 Modelled: 94 Confidence: 97.7% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1juh chain A Region: 61 - 135 Aligned: 64 Modelled: 75 Confidence: 97.7% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 1x82 chain A Region: 50 - 134 Aligned: 76 Modelled: 85 Confidence: 97.6% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Glucose-6-phosphate isomerase, GPI Phyre2 PDB 2o8q chain A Region: 47 - 135 Aligned: 71 Modelled: 76 Confidence: 97.5% Identity: 17% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution Phyre2 1 d2ixca1 2 c2c0zA_ 3 d2c0za1 4 d1dzra_ 5 d1oi6a_ 6 c1upiA_ 7 d2ixha1 8 d1ep0a_ 9 c3rykB_ 10 d1wlta1 11 d1nxma_ 12 c3ejkA_ 13 c2zklA_ 14 d2pa7a1 15 c2vqaC_ 16 d1j58a_ 17 d2phla2 18 d1juha_ 19 d1x82a_ 20 c2o8qA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ixca1 100.0 34 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 2 c2c0zA_ 100.0 34 PDB header:isomerase Chain: A: PDB Molecule:novw; PDBTitle: the 1.6 a resolution crystal structure of novw: a 4-keto-6-2 deoxy sugar epimerase from the novobiocin biosynthetic3 gene cluster of streptomyces spheroides 3 d2c0za1 100.0 34 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 4 d1dzra_ 100.0 65 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 5 d1oi6a_ 100.0 28 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 6 c1upiA_ 100.0 34 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 7 d2ixha1 100.0 59 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 8 d1ep0a_ 100.0 51 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 9 c3rykB_ 100.0 51 PDB header:isomerase Chain: B: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: 1.63 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 3,5-epimerase (rfbc) from bacillus anthracis str. ames with tdp and3 ppi bound 10 d1wlta1 100.0 39 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 11 d1nxma_ 100.0 31 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 12 c3ejkA_ 100.0 19 PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution 13 c2zklA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 14 d2pa7a1 100.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 15 c2vqaC_ 98.0 18 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 16 d1j58a_ 97.9 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 17 d2phla2 97.7 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 18 d1juha_ 97.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 19 d1x82a_ 97.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 20 c2o8qA_ 97.5 17 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 21 d1uija2 not modelled 97.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 22 d1j3pa_ not modelled 97.4 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 23 d1y3ta1 not modelled 97.4 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 24 c1cauB_ not modelled 97.3 14 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 25 c2oa2A_ not modelled 97.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 26 d2et1a1 not modelled 97.2 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 27 c2gu9B_ not modelled 97.2 17 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 28 c3kglB_ not modelled 97.1 16 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 29 c3ehkC_ not modelled 97.1 12 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 30 c2d5fB_ not modelled 97.0 16 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 31 d1uika2 not modelled 97.0 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 32 d1fxza2 not modelled 96.9 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 33 c3c3vA_ not modelled 96.9 20 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 34 c3s7eB_ not modelled 96.9 13 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 35 d1v70a_ not modelled 96.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 36 d1zvfa1 not modelled 96.9 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 37 d1od5a2 not modelled 96.9 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 38 c1fxzC_ not modelled 96.9 18 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 39 c3kscD_ not modelled 96.8 19 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 40 d1o4ta_ not modelled 96.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 41 c2e9qA_ not modelled 96.5 17 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 42 c1uijA_ not modelled 96.5 11 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 43 c3qacA_ not modelled 96.5 16 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 44 c3jzvA_ not modelled 96.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 45 c2q30C_ not modelled 96.4 13 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 46 d2f4pa1 not modelled 96.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 47 d1yfua1 not modelled 96.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 48 c3h8uA_ not modelled 96.2 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 49 c2i45C_ not modelled 96.1 20 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 50 d1lr5a_ not modelled 95.9 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 51 c2d40C_ not modelled 95.9 16 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 52 c3uyjA_ not modelled 95.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 53 c2pfwB_ not modelled 95.9 15 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 54 c2eaaB_ not modelled 95.9 12 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 55 c3ibmB_ not modelled 95.8 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 56 c3al6A_ not modelled 95.7 17 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 57 c3fjsC_ not modelled 95.7 19 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 58 d1dgwa_ not modelled 95.6 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 59 d2b8ma1 not modelled 95.5 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 60 c2ozjB_ not modelled 95.4 14 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 61 c2y0oA_ not modelled 95.3 19 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 62 d1y9qa2 not modelled 95.3 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 63 c3d82A_ not modelled 95.2 13 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 64 d1vj2a_ not modelled 95.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 65 c3kgzA_ not modelled 95.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 66 c3ht2A_ not modelled 95.2 18 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 67 d1od5a1 not modelled 95.1 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 68 c3cewA_ not modelled 95.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 69 c3i7dB_ not modelled 95.0 22 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 70 d1rc6a_ not modelled 95.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 71 d1uija1 not modelled 94.9 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 72 d2d40a1 not modelled 94.8 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 73 c2xlfA_ not modelled 94.5 13 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 74 d1uika1 not modelled 94.4 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 75 c3h7yA_ not modelled 94.2 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 76 d1yhfa1 not modelled 94.1 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 77 d1sfna_ not modelled 94.0 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 78 d1fxza1 not modelled 93.9 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c2cauA_ not modelled 93.8 12 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 80 d1sq4a_ not modelled 93.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 81 c3k2oB_ not modelled 93.3 13 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 82 d1vrba1 not modelled 93.3 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 83 c3rnsA_ not modelled 92.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 84 d1sefa_ not modelled 92.6 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 85 c1sefA_ not modelled 92.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 86 c2fqpD_ not modelled 92.2 19 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 87 c3k3nA_ not modelled 91.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 88 c2eceA_ not modelled 91.8 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 89 c3es1A_ not modelled 91.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 90 c2vpvA_ not modelled 91.3 10 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 91 c3lwcA_ not modelled 91.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 92 d2phda1 not modelled 89.9 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 93 c3l2hD_ not modelled 89.3 9 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 94 c2oziA_ not modelled 87.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 95 d1h2ka_ not modelled 87.8 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 96 d1zrra1 not modelled 87.3 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 97 c3bu7A_ not modelled 87.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 98 d3bu7a1 not modelled 87.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 99 c3o14B_ not modelled 85.5 14 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 100 c3ebrA_ not modelled 83.5 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 101 d1yuda1 not modelled 83.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 102 c3mpbA_ not modelled 83.2 13 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 103 c3kv5D_ not modelled 82.4 20 PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine 104 c3kvaA_ not modelled 81.7 23 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 105 d1znpa1 not modelled 80.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 106 d1xe7a_ not modelled 80.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YML079-like 107 c3pu3A_ not modelled 80.0 18 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 108 c3m3iC_ not modelled 79.1 14 PDB header:unknown function Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: hypothetical protein from leishmania major 109 d2bnma2 not modelled 78.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 110 c2yu1A_ not modelled 77.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 111 c3kv4A_ not modelled 75.0 22 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 112 c3n9mC_ not modelled 65.6 20 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 113 c2xdvA_ not modelled 63.8 14 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 114 c1y9qA_ not modelled 62.5 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 115 d1xsqa_ not modelled 61.3 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA 116 d2phla1 not modelled 61.1 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 117 d1rzhh1 not modelled 56.1 26 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain 118 d1bf2a1 not modelled 55.0 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 119 c1dgrX_ not modelled 53.9 11 PDB header:plant protein Chain: X: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 120 d1vr3a1 not modelled 51.5 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0