Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	R	F	F	W	L	V	A	A	A	L	L	L	A	G	C	A	G	E	K	G	I	V	E	K	E	G	Y	Q	L	D	T	R	R	Q	A	Q	A	A	Y	P	R	I	K	V	L	V	I	H	Y	T	A	D	D	F	D	S	S	L
Secondary structure
SS confidence
Disorder		?	?	?											?	?		?	?	?	?	?	?	?	?	?		?	?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	L	T	D	K	Q	V	S	S	H	Y	L	V	P	A	V	P	P	R	Y	N	G	K	P	R	I	W	Q	L	V	P	E	Q	E	L	A	W	H	A	G	I	S	A	W	R	G	A	T	R	L	N	D	T	S	I	G	I	E	L
Secondary structure
SS confidence
Disorder																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	N	R	G	W	Q	K	S	A	G	V	K	Y	F	A	P	F	E	P	A	Q	I	Q	A	L	I	P	L	A	K	D	I	I	A	R	Y	H	I	K	P	E	N	V	V	A	H	A	D	I	A	P	Q	R	K	D	D	P	G	P	L
Secondary structure
SS confidence
Disorder									?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	P	W	Q	Q	L	A	Q	Q	G	I	G	A	W	P	D	A	Q	R	V	N	F	Y	L	A	G	R	A	P	H	T	P	V	D	T	A	S	L	L	E	L	L	A	R	Y	G	Y	D	V	K	P	D	M	T	P	R	E	Q	R	R
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Sequence		V	I	M	A	F	Q	M	H	F	R	P	T	L	Y	N	G	E	A	D	A	E	T	Q	A	I	A	E	A	L	L	E	K	Y	G	Q	D
Secondary structure
SS confidence
Disorder																																			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bh7 chain A Region: 22 - 275 Aligned: 254 Modelled: 254 Confidence: 100.0% Identity: 99% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms Phyre2 PDB 2bgx chain A domain 2 Region: 22 - 194 Aligned: 173 Modelled: 173 Confidence: 100.0% Identity: 100% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1j3g chain A Region: 23 - 188 Aligned: 150 Modelled: 150 Confidence: 100.0% Identity: 35% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3hma chain A Region: 28 - 192 Aligned: 140 Modelled: 151 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya; PDBTitle: amidase from bacillus subtilis Phyre2 PDB 1yb0 chain A domain 1 Region: 38 - 189 Aligned: 130 Modelled: 148 Confidence: 100.0% Identity: 22% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1yck chain A domain 1 Region: 21 - 195 Aligned: 145 Modelled: 175 Confidence: 100.0% Identity: 24% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2cb3 chain A domain 1 Region: 21 - 188 Aligned: 142 Modelled: 165 Confidence: 100.0% Identity: 15% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1sk4 chain A Region: 21 - 188 Aligned: 141 Modelled: 161 Confidence: 100.0% Identity: 18% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2xz4 chain A Region: 23 - 189 Aligned: 142 Modelled: 160 Confidence: 99.9% Identity: 19% PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf Phyre2 PDB 1lba chain A Region: 42 - 186 Aligned: 123 Modelled: 145 Confidence: 99.9% Identity: 27% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2rkq chain A Region: 23 - 186 Aligned: 138 Modelled: 159 Confidence: 99.9% Identity: 19% PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd; PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd) Phyre2 PDB 1oht chain A Region: 23 - 188 Aligned: 140 Modelled: 154 Confidence: 99.9% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:cg14704 protein; PDBTitle: peptidoglycan recognition protein-lb Phyre2 PDB 1oht chain A Region: 23 - 188 Aligned: 140 Modelled: 154 Confidence: 99.9% Identity: 14% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2f2l chain X domain 1 Region: 22 - 188 Aligned: 141 Modelled: 166 Confidence: 99.9% Identity: 20% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1sxr chain A Region: 21 - 188 Aligned: 142 Modelled: 161 Confidence: 99.9% Identity: 16% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3lat chain B Region: 24 - 189 Aligned: 142 Modelled: 165 Confidence: 99.9% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie Phyre2 PDB 1s2j chain A Region: 21 - 188 Aligned: 142 Modelled: 161 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa Phyre2 PDB 2f2l chain A domain 1 Region: 23 - 181 Aligned: 138 Modelled: 150 Confidence: 99.9% Identity: 12% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2bgx chain A domain 1 Region: 195 - 275 Aligned: 81 Modelled: 81 Confidence: 99.9% Identity: 100% Fold: PGBD-like Superfamily: PGBD-like Family: Peptidoglycan binding domain, PGBD Phyre2 PDB 3ep1 chain B Region: 21 - 188 Aligned: 138 Modelled: 161 Confidence: 99.9% Identity: 19% PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana Phyre2 1 c2bh7A_ 2 d2bgxa2 3 d1j3ga_ 4 c3hmaA_ 5 d1yb0a1 6 d1ycka1 7 d2cb3a1 8 d1sk4a_ 9 c2xz4A_ 10 d1lbaa_ 11 c2rkqA_ 12 c1ohtA_ 13 d1ohta_ 14 d2f2lx1 15 d1sxra_ 16 c3latB_ 17 c1s2jA_ 18 d2f2la1 19 d2bgxa1 20 c3ep1B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bh7A_ 100.0 99 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 2 d2bgxa2 100.0 100 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 3 d1j3ga_ 100.0 35 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 4 c3hmaA_ 100.0 28 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya; PDBTitle: amidase from bacillus subtilis 5 d1yb0a1 100.0 22 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 6 d1ycka1 100.0 24 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 7 d2cb3a1 100.0 15 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 8 d1sk4a_ 100.0 18 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 9 c2xz4A_ 99.9 19 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf 10 d1lbaa_ 99.9 27 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 11 c2rkqA_ 99.9 19 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd; PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd) 12 c1ohtA_ 99.9 14 PDB header:hydrolase Chain: A: PDB Molecule:cg14704 protein; PDBTitle: peptidoglycan recognition protein-lb 13 d1ohta_ 99.9 14 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 14 d2f2lx1 99.9 20 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 15 d1sxra_ 99.9 16 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 16 c3latB_ 99.9 26 PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie 17 c1s2jA_ 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa 18 d2f2la1 99.9 12 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 19 d2bgxa1 99.9 100 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 20 c3ep1B_ 99.9 19 PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana 21 c2xz8A_ not modelled 99.2 13 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf 22 c3bkhA_ not modelled 99.0 22 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 23 d1lbua1 not modelled 98.9 14 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 24 c1lbuA_ not modelled 98.8 14 PDB header:hydrolase Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase; PDBTitle: hydrolase metallo (zn) dd-peptidase 25 d1eaka1 not modelled 97.3 17 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 26 d1su3a1 not modelled 96.5 21 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 27 d1slma1 not modelled 96.4 22 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 28 d1l6ja1 not modelled 96.3 24 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 29 c1eakA_ not modelled 96.3 17 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: catalytic domain of prommp-2 e404q mutant 30 c1l6jA_ not modelled 95.9 25 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b). 31 c1gxdA_ not modelled 92.2 16 PDB header:hydrolase Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: prommp-2/timp-2 complex 32 c3ds8A_ not modelled 64.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 33 c3d0kA_ not modelled 55.6 15 PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis 34 d2ikba1 not modelled 55.4 14 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:NMB1012-like 35 c1cr6A_ not modelled 40.1 13 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor 36 d2nr7a1 not modelled 39.4 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:NMB1012-like 37 c2zycA_ not modelled 37.4 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 38 c3so4C_ not modelled 37.0 18 PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica 39 c3fi7A_ not modelled 35.5 27 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 40 c3imlB_ not modelled 34.9 23 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei 41 d2dsta1 not modelled 34.9 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:TTHA1544-like 42 c3fleB_ not modelled 34.6 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. 43 c2y96A_ not modelled 34.0 12 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 44 d1mxaa3 not modelled 32.4 29 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 45 c3mlcC_ not modelled 31.5 12 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 46 d1hpla2 not modelled 30.5 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 47 d3b5ea1 not modelled 30.2 10 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 48 c3lyfB_ not modelled 30.0 24 PDB header:viral protein Chain: B: PDB Molecule:nucleocapsid protein; PDBTitle: crystal structure of the rift valley fever virus nucleocapsid protein 49 c3lp5A_ not modelled 29.4 21 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 50 c2vavL_ not modelled 27.8 18 PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) 51 d1k8qa_ not modelled 26.8 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase 52 c2pplA_ not modelled 24.5 12 PDB header:hydrolase Chain: A: PDB Molecule:pancreatic lipase-related protein 1; PDBTitle: human pancreatic lipase-related protein 1 53 c1gplA_ not modelled 23.9 20 PDB header:serine esterase Chain: A: PDB Molecule:rp2 lipase; PDBTitle: rp2 lipase 54 d1etha2 not modelled 23.6 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 55 d2h1ia1 not modelled 23.4 10 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 56 d1rp1a2 not modelled 23.4 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 57 d1lpbb2 not modelled 23.4 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 58 d1bu8a2 not modelled 23.0 20 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 59 c2pvsB_ not modelled 22.4 16 PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q 60 c1hplB_ not modelled 21.1 16 PDB header:hydrolase(carboxylic esterase) Chain: B: PDB Molecule:lipase; PDBTitle: horse pancreatic lipase. the crystal structure at 2.32 angstroms resolution 61 c1rp1A_ not modelled 20.9 16 PDB header:hydrolase Chain: A: PDB Molecule:pancreatic lipase related protein 1; PDBTitle: dog pancreatic lipase related protein 1 62 c3abqA_ not modelled 20.6 20 PDB header:lyase Chain: A: PDB Molecule:ethanolamine ammonia-lyase heavy chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and 2-amino-1-propanol 63 c3rv2B_ not modelled 19.8 29 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum 64 c2zyiB_ not modelled 19.7 14 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 65 d1cvla_ not modelled 19.6 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 66 d1gpla2 not modelled 18.9 20 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 67 c3rgiA_ not modelled 18.7 13 PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase 68 c2qtsA_ not modelled 18.5 24 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 69 d2aala1 not modelled 18.3 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 70 c3im8A_ not modelled 17.3 13 PDB header:transferase Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from streptococcus pneumoniae 71 d1ex9a_ not modelled 17.2 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 72 c2q0xA_ not modelled 15.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: alpha/beta hydrolase fold protein of unknown function 73 c3ezoA_ not modelled 15.6 17 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein s-2 malonyltransferase from burkholderia pseudomallei 1710b 74 c3og9A_ not modelled 15.3 3 PDB header:hydrolase Chain: A: PDB Molecule:protein yahd a copper inducible hydrolase; PDBTitle: structure of yahd with malic acid 75 c1rg9D_ not modelled 15.2 24 PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp 76 c2qezC_ not modelled 15.2 20 PDB header:lyase Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution 77 c1xhoB_ not modelled 15.2 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 78 d1xhoa_ not modelled 15.2 7 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 79 c2h1iA_ not modelled 14.9 14 PDB header:hydrolase Chain: A: PDB Molecule:carboxylesterase; PDBTitle: crystal structure of the bacillus cereus carboxylesterase 80 d1ispa_ not modelled 14.9 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 81 c3g87A_ not modelled 14.8 10 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease 82 c3i1iA_ not modelled 14.7 12 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 83 d1vhra_ not modelled 14.7 16 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 84 c2gwoC_ not modelled 14.6 15 PDB header:hydrolase Chain: C: PDB Molecule:dual specificity protein phosphatase 13; PDBTitle: crystal structure of tmdp 85 c1qgeD_ not modelled 14.4 16 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 86 c3m6yA_ not modelled 14.2 20 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 87 d1fnja_ not modelled 13.9 37 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 88 c2qmqA_ not modelled 13.9 8 PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution 89 c3muxB_ not modelled 13.9 21 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 90 d2gsta2 not modelled 13.4 29 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 91 c3ptwA_ not modelled 13.3 10 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 92 c3ex7I_ not modelled 13.1 22 PDB header:hydrolase/rna binding protein/rna Chain: I: PDB Molecule:protein casc3; PDBTitle: the crystal structure of ejc in its transition state 93 c3l80A_ not modelled 12.9 12 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159 94 c3doiA_ not modelled 12.6 13 PDB header:hydrolase Chain: A: PDB Molecule:esterase; PDBTitle: crystal structure of a thermostable esterase complex with2 paraoxon 95 c2jfkD_ not modelled 12.3 16 PDB header:transferase Chain: D: PDB Molecule:fatty acid synthase; PDBTitle: structure of the mat domain of human fas with malonyl-coa 96 d4lipd_ not modelled 12.2 23 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 97 c3eenA_ not modelled 12.2 21 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acp transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331 98 d1dbfa_ not modelled 11.9 37 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 99 d1xw6a2 not modelled 11.8 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0