Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	N	Y	P	A	E	Y	E	I	G	D	I	V	F	T	C	I	G	A	A	L	F	G	Q	I	S	A	A	S	N	C	W	S	N	H	V	G	I	I	I	G	H	N	G	E	D	F	L	V	A	E	S	R	V	P	L	S	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	T	T	L	S	R	F	I	K	R	S	S	N	Q	R	Y	A	I	K	R	L	D	A	G	L	T	E	R	Q	K	Q	R	I	V	E	Q	V	P	S	R	L	R	K	L	Y	H	T	G	F	K	Y	E	S	S	R	Q	F	C	S	K
Secondary structure
SS confidence
Disorder		?																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	V	F	D	I	Y	K	E	A	L	C	I	P	V	G	E	I	E	T	F	G	E	L	L	N	S	N	P	N	A	K	L	T	F	W	K	F	W	F	L	G	S	I	P	W	E	R	K	T	V	T	P	A	S	L	W	H	H	P	G
Secondary structure
SS confidence
Disorder																									?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence		L	V	L	I	H	A	E	G	V	E	T	P	Q	P	E	L	T	E	A	V
Secondary structure
SS confidence
Disorder								?	?				?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2if6 chain A domain 1 Region: 8 - 187 Aligned: 177 Modelled: 180 Confidence: 100.0% Identity: 25% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 3kw0 chain D Region: 4 - 184 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2p1g chain A Region: 7 - 81 Aligned: 66 Modelled: 66 Confidence: 98.1% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 3h41 chain A Region: 6 - 81 Aligned: 63 Modelled: 65 Confidence: 97.5% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 2k1g chain A Region: 85 - 136 Aligned: 51 Modelled: 52 Confidence: 97.5% Identity: 22% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 2kyt chain A Region: 1 - 110 Aligned: 87 Modelled: 91 Confidence: 97.3% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 2fg0 chain B Region: 7 - 81 Aligned: 60 Modelled: 75 Confidence: 97.3% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 2evr chain A domain 2 Region: 6 - 81 Aligned: 61 Modelled: 76 Confidence: 97.2% Identity: 26% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 2im9 chain A Region: 1 - 85 Aligned: 84 Modelled: 85 Confidence: 97.0% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 Phyre2 PDB 2im9 chain A domain 1 Region: 1 - 85 Aligned: 84 Modelled: 85 Confidence: 97.0% Identity: 13% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Lpg0564-like Phyre2 PDB 3gt2 chain A Region: 87 - 136 Aligned: 49 Modelled: 50 Confidence: 97.0% Identity: 10% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 2xiv chain A Region: 87 - 136 Aligned: 49 Modelled: 50 Confidence: 96.7% Identity: 18% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3i86 chain A Region: 87 - 136 Aligned: 49 Modelled: 50 Confidence: 96.7% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 3pbi chain A Region: 87 - 136 Aligned: 49 Modelled: 50 Confidence: 96.5% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 3npf chain B Region: 90 - 136 Aligned: 44 Modelled: 47 Confidence: 96.1% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 2io8 chain A domain 2 Region: 6 - 54 Aligned: 40 Modelled: 40 Confidence: 93.0% Identity: 25% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 3m1u chain B Region: 90 - 134 Aligned: 42 Modelled: 45 Confidence: 91.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2vpm chain B Region: 6 - 53 Aligned: 38 Modelled: 48 Confidence: 83.5% Identity: 24% PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase Phyre2 PDB 2ioa chain A Region: 6 - 53 Aligned: 39 Modelled: 39 Confidence: 83.1% Identity: 26% PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor Phyre2 PDB 2k3a chain A Region: 7 - 58 Aligned: 39 Modelled: 39 Confidence: 66.9% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 Phyre2 1 d2if6a1 2 c3kw0D_ 3 c2p1gA_ 4 c3h41A_ 5 c2k1gA_ 6 c2kytA_ 7 c2fg0B_ 8 d2evra2 9 c2im9A_ 10 d2im9a1 11 c3gt2A_ 12 c2xivA_ 13 c3i86A_ 14 c3pbiA_ 15 c3npfB_ 16 d2io8a2 17 c3m1uB_ 18 c2vpmB_ 19 c2ioaA_ 20 c2k3aA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2if6a1 100.0 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 2 c3kw0D_ 100.0 21 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 3 c2p1gA_ 98.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 4 c3h41A_ 97.5 19 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 5 c2k1gA_ 97.5 22 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 6 c2kytA_ 97.3 16 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 7 c2fg0B_ 97.3 27 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 8 d2evra2 97.2 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 9 c2im9A_ 97.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 10 d2im9a1 97.0 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 11 c3gt2A_ 97.0 10 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 12 c2xivA_ 96.7 18 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 13 c3i86A_ 96.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 14 c3pbiA_ 96.5 16 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 15 c3npfB_ 96.1 16 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 16 d2io8a2 93.0 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 17 c3m1uB_ 91.0 19 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 18 c2vpmB_ 83.5 24 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 19 c2ioaA_ 83.1 26 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 20 c2k3aA_ 66.9 26 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 21 d1wh7a_ not modelled 44.2 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 22 d1igna2 not modelled 41.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 23 d1wfza_ not modelled 29.0 35 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 24 c3nnlB_ not modelled 27.2 33 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 25 c2z7eB_ not modelled 25.4 12 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 26 d2glza1 not modelled 22.5 10 Fold:FwdE/GAPDH domain-like Superfamily:FwdE-like Family:FwdE-like 27 d2gy9q1 not modelled 19.3 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d1hkva1 not modelled 18.0 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 29 d1wpna_ not modelled 17.1 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 30 d1vbga2 not modelled 15.4 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 31 c1khiA_ not modelled 15.2 15 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 32 d1h2ka_ not modelled 14.7 24 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 33 d2z1ea2 not modelled 14.7 24 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 c2zkqq_ not modelled 14.2 30 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 35 d1khia1 not modelled 13.5 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 36 d1zyma2 not modelled 13.3 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system 37 c3bbnQ_ not modelled 13.3 15 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 38 c3zvmA_ not modelled 13.0 19 PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase 39 d1r9pa_ not modelled 12.7 29 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 40 c2obnA_ not modelled 12.6 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 41 d1k20a_ not modelled 12.4 26 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 42 d1asua_ not modelled 12.4 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 43 c3k1rA_ not modelled 12.1 19 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 44 d1kbla2 not modelled 11.8 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 45 c1s1hQ_ not modelled 11.6 20 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 46 c3k2oB_ not modelled 11.6 41 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 47 d1h6za2 not modelled 11.6 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 48 c2x35A_ not modelled 11.5 13 PDB header:transcription Chain: A: PDB Molecule:peregrin; PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp2 domain of brpf1. 49 c2zpmA_ not modelled 11.3 16 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 50 d1xjsa_ not modelled 11.3 12 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 51 c2opwA_ not modelled 11.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 52 d2qamc2 not modelled 10.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 d1rl2a2 not modelled 10.7 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 54 c1zx6A_ not modelled 10.5 17 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 55 d2uubq1 not modelled 10.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 56 d1vcta2 not modelled 10.2 8 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 57 d2hawa1 not modelled 9.8 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 58 d1su0b_ not modelled 9.5 35 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 59 d1i94q_ not modelled 9.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c1ezaA_ not modelled 9.0 12 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 61 d2f4pa1 not modelled 9.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 62 d1ripa_ not modelled 8.8 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2wkdA_ not modelled 8.7 27 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 64 d2fcta1 not modelled 8.7 13 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 65 d2hg6a1 not modelled 8.6 50 Fold:PA1123-like Superfamily:PA1123-like Family:PA1123-like 66 d1i74a_ not modelled 8.3 28 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 67 c3mt1B_ not modelled 8.2 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 68 d1ntha_ not modelled 8.1 10 Fold:TIM beta/alpha-barrel Superfamily:Monomethylamine methyltransferase MtmB Family:Monomethylamine methyltransferase MtmB 69 d1vrba1 not modelled 8.0 6 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 70 d2nlua1 not modelled 8.0 38 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 71 d2zoda2 not modelled 8.0 6 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 72 d1hyoa2 not modelled 7.6 17 Fold:FAH Superfamily:FAH Family:FAH 73 d1wpga1 not modelled 7.4 28 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 74 c3al6A_ not modelled 7.3 41 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 75 c1nhgD_ not modelled 7.2 9 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure analysis of plasmodium falciparum enoyl-2 acyl-carrier-protein reductase with triclosan 76 d1fc6a3 not modelled 7.2 30 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Tail specific protease PDZ domain 77 c1yj5B_ not modelled 7.1 19 PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 78 c2yy8B_ not modelled 7.0 12 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 79 d1sota1 not modelled 6.9 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 80 d1h3za_ not modelled 6.9 25 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 81 d1cz5a1 not modelled 6.8 38 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 82 d1knwa1 not modelled 6.8 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 83 c1i7oC_ not modelled 6.8 17 PDB header:isomerase, lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional PDBTitle: crystal structure of hpce 84 d1d7ka1 not modelled 6.7 21 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 85 c2hc8A_ not modelled 6.6 33 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 86 c4a1bO_ not modelled 6.5 24 PDB header:ribosome Chain: O: PDB Molecule:rpl28; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 87 c2p3wB_ not modelled 6.4 27 PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv) 88 c3c9qA_ not modelled 6.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein c8orf32; PDBTitle: crystal structure of the uncharacterized human protein c8orf32 with2 bound peptide 89 d1l0wa2 not modelled 6.2 30 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 90 c3d3rA_ not modelled 6.1 23 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 91 d1clia2 not modelled 6.1 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 92 d2eyqa1 not modelled 6.1 35 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 93 d1vi6a_ not modelled 6.1 14 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 94 c2qniA_ not modelled 6.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu0299; PDBTitle: crystal structure of uncharacterized protein atu0299 95 c1yfsB_ not modelled 5.9 22 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 96 d1ky9a1 not modelled 5.9 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 97 c2j5uB_ not modelled 5.8 20 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 98 c2qq4A_ not modelled 5.8 29 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 99 c2hw2A_ not modelled 5.8 44 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0