Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	E	F	D	W	S	S	I	V	P	S	L	P	Y	L	L	D	G	L	V	I	T	L	K	I	T	V	T	A	V	V	I	G	I	L	W	G	T	M	L	A	V	M	R	L	S	S	F	A	P	V	A	W	F	A	K	A	Y	V
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	V	F	R	S	I	P	L	V	M	V	L	L	W	F	Y	L	I	V	P	G	F	L	Q	N	V	L	G	L	S	P	K	N	D	I	R	L	I	S	A	M	V	A	F	S	M	F	E	A	A	Y	Y	S	E	I	I	R	A	G	I
Secondary structure
SS confidence
Disorder																								?	?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	S	I	S	R	G	Q	S	S	A	A	L	A	L	G	M	T	H	W	Q	S	M	K	L	I	I	L	P	Q	A	F	R	A	M	V	P	L	L	L	T	Q	G	I	V	L	F	Q	D	T	S	L	V	Y	V	L	S	L	A	D	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence		F	R	T	A	S	T	I	G	E	R	D	G	T	Q	V	E	M	I	L	F	A	G	F	V	Y	F	V	I	S	L	S	A	S	L	L	V	S	Y	L	K	R	R	T	A
Secondary structure
SS confidence
Disorder																																												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2onk chain C Region: 2 - 219 Aligned: 218 Modelled: 218 Confidence: 99.9% Identity: 15% PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Phyre2 PDB 2onk chain C domain 1 Region: 2 - 219 Aligned: 218 Modelled: 218 Confidence: 99.9% Identity: 15% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain C domain 1 Region: 3 - 217 Aligned: 215 Modelled: 215 Confidence: 99.9% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain D Region: 3 - 217 Aligned: 215 Modelled: 215 Confidence: 99.9% Identity: 14% PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Phyre2 PDB 2r6g chain F Region: 16 - 215 Aligned: 200 Modelled: 199 Confidence: 99.8% Identity: 13% PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Phyre2 PDB 2r6g chain F domain 2 Region: 16 - 215 Aligned: 200 Modelled: 200 Confidence: 99.8% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3fh6 chain F Region: 5 - 222 Aligned: 218 Modelled: 217 Confidence: 99.8% Identity: 12% PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Phyre2 PDB 2r6g chain G domain 1 Region: 16 - 222 Aligned: 203 Modelled: 203 Confidence: 99.7% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3dhw chain A domain 1 Region: 15 - 217 Aligned: 201 Modelled: 203 Confidence: 99.7% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1ntc chain A Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 35.3% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 34.0% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 34.0% Identity: 22% PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity Phyre2 PDB 1eto chain B Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 32.3% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1fip chain A Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 32.0% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1etx chain A Region: 115 - 145 Aligned: 31 Modelled: 31 Confidence: 27.0% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 3e7l chain D Region: 114 - 145 Aligned: 32 Modelled: 32 Confidence: 24.1% Identity: 13% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain Phyre2 PDB 2jwa chain A Region: 21 - 54 Aligned: 34 Modelled: 34 Confidence: 23.1% Identity: 6% PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure Phyre2 PDB 1g2h chain A Region: 115 - 145 Aligned: 30 Modelled: 31 Confidence: 21.4% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 2ns0 chain A domain 1 Region: 129 - 146 Aligned: 18 Modelled: 17 Confidence: 18.3% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: RHA1 ro06458-like Phyre2 PDB 2cw1 chain A Region: 124 - 137 Aligned: 14 Modelled: 14 Confidence: 17.8% Identity: 43% PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein Phyre2 1 c2onkC_ 2 d2onkc1 3 d3d31c1 4 c3d31D_ 5 c2r6gF_ 6 d2r6gf2 7 c3fh6F_ 8 d2r6gg1 9 d3dhwa1 10 d1ntca_ 11 d1umqa_ 12 c1umqA_ 13 d1etob_ 14 d1fipa_ 15 d1etxa_ 16 c3e7lD_ 17 c2jwaA_ 18 d1g2ha_ 19 d2ns0a1 20 c2cw1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2onkC_ 99.9 15 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 2 d2onkc1 99.9 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 3 d3d31c1 99.9 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 4 c3d31D_ 99.9 14 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 5 c2r6gF_ 99.8 13 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 6 d2r6gf2 99.8 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 7 c3fh6F_ 99.8 12 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 8 d2r6gg1 99.7 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 9 d3dhwa1 99.7 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 d1ntca_ 35.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 11 d1umqa_ 34.0 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 12 c1umqA_ 34.0 22 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 13 d1etob_ 32.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 14 d1fipa_ 32.0 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 15 d1etxa_ 27.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 16 c3e7lD_ 24.1 13 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 17 c2jwaA_ 23.1 6 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 18 d1g2ha_ 21.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 19 d2ns0a1 18.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 20 c2cw1A_ 17.8 43 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 21 c2hx6A_ not modelled 13.1 14 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 22 c2d7dB_ not modelled 11.3 15 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 23 d1i3ja_ not modelled 8.9 10 Fold:DNA-binding domain of intron-encoded endonucleases Superfamily:DNA-binding domain of intron-encoded endonucleases Family:DNA-binding domain of intron-encoded endonucleases 24 c3qkbB_ not modelled 8.7 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 25 c3iwcD_ not modelled 8.3 35 PDB header:lyase Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase; PDBTitle: t. maritima adometdc complex with s-adenosylmethionine2 methyl ester 26 d1st6a6 not modelled 8.2 15 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 27 d2auwa1 not modelled 8.0 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 28 d1i1ga1 not modelled 7.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 29 d1x8da1 not modelled 7.9 7 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 30 c2kvlA_ not modelled 7.8 8 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 31 d1cf7a_ not modelled 7.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 32 c1twcF_ not modelled 7.5 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23 PDBTitle: rna polymerase ii complexed with gtp 33 d1twff_ not modelled 7.5 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 34 c2lhuA_ not modelled 7.4 19 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 35 d1qkla_ not modelled 7.3 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 36 c2pmzW_ not modelled 7.3 14 PDB header:translation, transferase Chain: W: PDB Molecule:dna-directed rna polymerase subunit k; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 37 c3s1bA_ not modelled 7.3 24 PDB header:signaling protein Chain: A: PDB Molecule:mini-z; PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis 38 c1ciiA_ not modelled 7.2 30 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 39 d2cg4a1 not modelled 7.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 40 d3orca_ not modelled 7.0 36 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 41 d2cyya1 not modelled 7.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 42 c1y2iC_ not modelled 7.0 27 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri 43 d1y2ia_ not modelled 7.0 27 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 44 c2ks1B_ not modelled 6.9 7 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 45 d2hqva1 not modelled 6.9 8 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:ChuX-like 46 d2obpa1 not modelled 6.8 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 47 c2nq2A_ not modelled 6.8 11 PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 48 d1se7a_ not modelled 6.7 40 Fold:DNA polymerase III theta subunit-like Superfamily:DNA polymerase III theta subunit-like Family:DNA polymerase III theta subunit-like 49 d2cfxa1 not modelled 6.6 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 50 c2qlxA_ not modelled 6.6 11 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 51 c2qlwA_ not modelled 6.6 11 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 52 d1vr4a1 not modelled 6.4 9 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 53 d1sdia_ not modelled 6.4 23 Fold:YcfC-like Superfamily:YcfC-like Family:YcfC-like 54 c2auwB_ not modelled 6.4 19 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 55 c2zihC_ not modelled 6.4 6 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74 56 d1v54g_ not modelled 6.4 12 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 57 d1brwa3 not modelled 6.4 24 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 58 c2i88A_ not modelled 6.4 24 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 59 c2ziiA_ not modelled 6.3 6 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 74; PDBTitle: crystal structure of yeast vps74-n-term truncation variant 60 d2o3aa1 not modelled 6.3 33 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 61 d1o8ca2 not modelled 6.3 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 62 c2kz3A_ not modelled 6.3 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 63 d1h6gb1 not modelled 6.3 19 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 64 d2phcb1 not modelled 6.2 8 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 65 c2yy8B_ not modelled 6.2 33 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 66 d2tpta3 not modelled 6.2 29 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 67 c1pyuD_ not modelled 6.1 31 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 68 c2vn2B_ not modelled 6.1 14 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 69 c1piiA_ not modelled 6.0 20 PDB header:bifunctional(isomerase and synthase) Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase; PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution 70 c1rkcB_ not modelled 6.0 11 PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:talin; PDBTitle: human vinculin head (1-258) in complex with talin's2 vinculin binding site 3 (residues 1944-1969) 71 d1jhfa1 not modelled 6.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 72 c2gqqB_ not modelled 6.0 6 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 73 c3mmlD_ not modelled 5.9 17 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 74 c3h0gF_ not modelled 5.9 27 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 75 c1xwjB_ not modelled 5.9 11 PDB header:cell adhesion/protein binding Chain: B: PDB Molecule:talin; PDBTitle: vinculin head (1-258) in complex with the talin vinculin2 binding site 3 (1945-1969) 76 d1icha_ not modelled 5.9 5 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 77 c1ichA_ not modelled 5.9 5 PDB header:apoptosis Chain: A: PDB Molecule:tumor necrosis factor receptor-1; PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain 78 c2ka1A_ not modelled 5.8 11 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 79 c2ka2B_ not modelled 5.8 11 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 80 d1a53a_ not modelled 5.8 27 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 81 c2e75E_ not modelled 5.8 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 82 c1vf5R_ not modelled 5.8 29 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 83 c2e74E_ not modelled 5.8 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 84 c2e76E_ not modelled 5.8 29 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 85 d2e74e1 not modelled 5.8 29 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 86 c2xa6B_ not modelled 5.7 21 PDB header:transcription Chain: B: PDB Molecule:kh domain-containing\,rna-binding\,signal PDBTitle: structural basis for homodimerization of the src-associated2 during mitosis, 68 kd protein (sam68) qua1 domain 87 c2ka2A_ not modelled 5.7 16 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 88 c2ka1B_ not modelled 5.7 16 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 89 c3lpeF_ not modelled 5.7 25 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 90 d1nyoa_ not modelled 5.7 3 Fold:FAS1 domain Superfamily:FAS1 domain Family:FAS1 domain 91 c2ijlB_ not modelled 5.6 20 PDB header:transcription Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor; PDBTitle: the structure of a putative mode from agrobacterium tumefaciens. 92 d1vf5c3 not modelled 5.6 17 Fold:Single transmembrane helix Superfamily:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor Family:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor 93 c2zp2B_ not modelled 5.5 4 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 94 d1l7va_ not modelled 5.5 13 Fold:ABC transporter involved in vitamin B12 uptake, BtuC Superfamily:ABC transporter involved in vitamin B12 uptake, BtuC Family:ABC transporter involved in vitamin B12 uptake, BtuC 95 c2kncA_ not modelled 5.5 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 96 c1jd7A_ not modelled 5.5 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 97 c3gebC_ not modelled 5.4 17 PDB header:hydrolase Chain: C: PDB Molecule:eyes absent homolog 2; PDBTitle: crystal structure of edeya2 98 c3gk0H_ not modelled 5.4 27 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 99 c1vf5E_ not modelled 5.4 30 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0