Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	M	A	E	Q	Q	L	Y	I	H	G	G	Y	T	S	A	T	S	G	R	T	F	E	T	I	N	P	A	N	G	N	V	L	A	T	V	Q	A	A	G	R	E	D	V	D	R	A	V	K	S	A	Q	Q	G	Q	K	I	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	S	M	T	A	M	E	R	S	R	I	L	R	R	A	V	D	I	L	R	E	R	N	D	E	L	A	K	L	E	T	L	D	T	G	K	A	Y	S	E	T	S	T	V	D	I	V	T	G	A	D	V	L	E	Y	Y	A	G	L	I
Secondary structure
SS confidence
Disorder			?	?																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	A	L	E	G	S	Q	I	P	L	R	E	T	S	F	V	Y	T	R	R	E	P	L	G	V	V	A	G	I	G	A	W	N	Y	P	I	Q	I	A	L	W	K	S	A	P	A	L	A	A	G	N	A	M	I	F	K	P	S	E	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	P	L	T	A	L	K	L	A	E	I	Y	S	E	A	G	L	P	D	G	V	F	N	V	L	P	G	V	G	A	E	T	G	Q	Y	L	T	E	H	P	G	I	A	K	V	S	F	T	G	G	V	A	S	G	K	K	V	M	A	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	A	A	S	S	L	K	E	V	T	M	E	L	G	G	K	S	P	L	I	V	F	D	D	A	D	L	D	L	A	A	D	I	A	M	M	A	N	F	F	S	S	G	Q	V	C	T	N	G	T	R	V	F	V	P	A	K	C	K	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	F	E	Q	K	I	L	A	R	V	E	R	I	R	A	G	D	V	F	D	P	Q	T	N	F	G	P	L	V	S	F	P	H	R	D	N	V	L	R	Y	I	A	K	G	K	E	E	G	A	R	V	L	C	G	G	D	V	L	K	G
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	G	F	D	N	G	A	W	V	A	P	T	V	F	T	D	C	S	D	D	M	T	I	V	R	E	E	I	F	G	P	V	M	S	I	L	T	Y	E	S	E	D	E	V	I	R	R	A	N	D	T	D	Y	G	L	A	A	G	I	V
Secondary structure
SS confidence
Disorder		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		T	A	D	L	N	R	A	H	R	V	I	H	Q	L	E	A	G	I	C	W	I	N	T	W	G	E	S	P	A	E	M	P	V	G	G	Y	K	H	S	G	I	G	R	E	N	G	V	M	T	L	Q	S	Y	T	Q	V	K	S	I	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490
Sequence		V	E	M	A	K	F	Q	S	I	F
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ve5 chain H Region: 2 - 490 Aligned: 489 Modelled: 489 Confidence: 100.0% Identity: 77% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 1bxs chain A Region: 2 - 488 Aligned: 483 Modelled: 483 Confidence: 100.0% Identity: 39% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1a4s chain A Region: 3 - 490 Aligned: 485 Modelled: 488 Confidence: 100.0% Identity: 51% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ed6 chain B Region: 6 - 486 Aligned: 479 Modelled: 481 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 1o9j chain A Region: 2 - 488 Aligned: 483 Modelled: 487 Confidence: 100.0% Identity: 39% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1o04 chain A Region: 2 - 488 Aligned: 483 Modelled: 483 Confidence: 100.0% Identity: 42% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1ag8 chain A Region: 2 - 488 Aligned: 483 Modelled: 487 Confidence: 100.0% Identity: 43% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2o2q chain A Region: 6 - 483 Aligned: 474 Modelled: 478 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 2d4e chain B Region: 5 - 485 Aligned: 478 Modelled: 481 Confidence: 100.0% Identity: 40% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 3r31 chain A Region: 1 - 484 Aligned: 481 Modelled: 484 Confidence: 100.0% Identity: 54% PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Phyre2 PDB 3iwk chain B Region: 6 - 488 Aligned: 479 Modelled: 483 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 3rh9 chain A Region: 2 - 480 Aligned: 474 Modelled: 479 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 3i44 chain A Region: 4 - 481 Aligned: 474 Modelled: 478 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution Phyre2 PDB 3k2w chain D Region: 3 - 484 Aligned: 480 Modelled: 482 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c Phyre2 PDB 2jg7 chain G Region: 5 - 489 Aligned: 476 Modelled: 485 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 3b4w chain A Region: 5 - 485 Aligned: 476 Modelled: 481 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ Phyre2 PDB 1wnd chain A Region: 6 - 483 Aligned: 472 Modelled: 478 Confidence: 100.0% Identity: 38% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ifg chain H Region: 2 - 483 Aligned: 476 Modelled: 482 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 Phyre2 PDB 3ek1 chain C Region: 2 - 485 Aligned: 476 Modelled: 484 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 Phyre2 PDB 3qan chain B Region: 5 - 484 Aligned: 472 Modelled: 478 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 1 c2ve5H_ 2 d1bxsa_ 3 d1a4sa_ 4 c3ed6B_ 5 d1o9ja_ 6 d1o04a_ 7 d1ag8a_ 8 c2o2qA_ 9 c2d4eB_ 10 c3r31A_ 11 c3iwkB_ 12 c3rh9A_ 13 c3i44A_ 14 c3k2wD_ 15 c2jg7G_ 16 c3b4wA_ 17 d1wnda_ 18 c3ifgH_ 19 c3ek1C_ 20 c3qanB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ve5H_ 100.0 77 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 2 d1bxsa_ 100.0 39 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 3 d1a4sa_ 100.0 51 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 4 c3ed6B_ 100.0 40 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 5 d1o9ja_ 100.0 39 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 6 d1o04a_ 100.0 42 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 7 d1ag8a_ 100.0 43 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 8 c2o2qA_ 100.0 39 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 9 c2d4eB_ 100.0 40 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 10 c3r31A_ 100.0 54 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 11 c3iwkB_ 100.0 41 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 12 c3rh9A_ 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 13 c3i44A_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 14 c3k2wD_ 100.0 35 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 15 c2jg7G_ 100.0 30 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 16 c3b4wA_ 100.0 39 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 17 d1wnda_ 100.0 38 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 18 c3ifgH_ 100.0 37 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 19 c3ek1C_ 100.0 34 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 20 c3qanB_ 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 21 d1uzba_ not modelled 100.0 32 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 22 c1t90B_ not modelled 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 23 c3jz4C_ not modelled 100.0 37 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 24 c2w8qA_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 25 d1euha_ not modelled 100.0 33 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 26 c3prlD_ not modelled 100.0 33 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 27 c2hg2A_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 28 d1ky8a_ not modelled 100.0 31 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 29 d1bi9a_ not modelled 100.0 40 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 30 c3ju8B_ not modelled 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 31 c3hazA_ not modelled 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 32 c3rosA_ not modelled 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 33 c2vroB_ not modelled 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 34 c3efvC_ not modelled 100.0 32 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 35 c3r64A_ not modelled 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 36 c3pqaA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 37 d1ad3a_ not modelled 100.0 27 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 38 c3v4cB_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 39 d1ez0a_ not modelled 100.0 25 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 40 c3lnsD_ not modelled 100.0 26 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 41 c3k9dD_ not modelled 100.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 42 d1o20a_ not modelled 100.0 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 43 c3my7A_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 44 c2h5gA_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1vlua_ not modelled 100.0 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c1vluB_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 98.5 17 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 c2yvqA_ not modelled 42.9 11 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 49 d1a9xa2 not modelled 40.4 15 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 50 d1uz5a3 not modelled 33.2 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 51 d1y5ea1 not modelled 30.9 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 52 c2yukA_ not modelled 30.7 26 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 53 d1xxaa_ not modelled 28.1 18 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 54 c1uz5A_ not modelled 27.9 15 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 55 c3jtpB_ not modelled 26.7 14 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 56 d2bona1 not modelled 26.6 18 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 57 d2g2ca1 not modelled 26.6 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 58 d1k99a_ not modelled 26.1 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 59 d1e3ha5 not modelled 25.7 34 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 60 c2crjA_ not modelled 24.0 18 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 61 d1yuaa2 not modelled 23.8 18 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 62 c2is8A_ not modelled 23.1 16 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 63 d1o66a_ not modelled 22.4 19 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 64 c2ec4A_ not modelled 22.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 65 d1mkza_ not modelled 21.2 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 66 d1j3xa_ not modelled 21.0 19 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 67 c1j3xA_ not modelled 21.0 19 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 68 d2ioja1 not modelled 20.6 19 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 69 c3fghA_ not modelled 20.0 11 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 70 c3q3hA_ not modelled 19.7 14 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 71 c2eqzA_ not modelled 19.6 16 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 72 c1eakA_ not modelled 19.5 20 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: catalytic domain of prommp-2 e404q mutant 73 c1v9nA_ not modelled 19.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 74 c2co9A_ not modelled 18.5 10 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 75 d1xrha_ not modelled 18.2 18 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 76 c2pjkA_ not modelled 17.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 77 d1j46a_ not modelled 16.7 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 78 c1l6jA_ not modelled 16.5 16 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b). 79 c3i0pA_ not modelled 16.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica 80 d2lefa_ not modelled 15.9 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 81 d1rfma_ not modelled 15.8 19 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 82 c2cs1A_ not modelled 15.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 83 c3uoeB_ not modelled 15.7 16 PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti 84 d1v64a_ not modelled 15.5 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 85 d1s7ia_ not modelled 15.4 8 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 86 c1vbiA_ not modelled 15.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 87 d1hsma_ not modelled 14.9 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 88 c2nqqA_ not modelled 14.7 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 89 d1u0ta_ not modelled 14.7 13 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 90 d2ftsa3 not modelled 14.4 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 91 d1nxua_ not modelled 14.4 25 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 92 d1s99a_ not modelled 14.4 12 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:Putative thiamin/HMP-binding protein YkoF 93 d1lwma_ not modelled 14.0 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 94 c2l69A_ not modelled 13.8 13 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 95 d2fiua1 not modelled 13.6 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like 96 c3lo3E_ not modelled 13.4 15 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 97 d1wu2a3 not modelled 13.2 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 98 c1wtjB_ not modelled 13.2 12 PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato 99 c1b4aA_ not modelled 13.1 14 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0