Phyre 2 Results for P17445

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Email | l.a.kelley@imperial.ac.uk
Description | P17445
Date | Thu Jan 5 11:36:12 GMT 2012
Unique Job ID | 47924f594f63bc83

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2ve5H_
Top template information
PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
489 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | R | M | A | E | Q | Q | L | Y | I | H | G | G | Y | T | S | A | T | S | G | R | T | F | E | T | I | N | P | A | N | G | N | V | L | A | T | V | Q | A | A | G | R | E | D | V | D | R | A | V | K | S | A | Q | Q | G | Q | K | I | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | S | M | T | A | M | E | R | S | R | I | L | R | R | A | V | D | I | L | R | E | R | N | D | E | L | A | K | L | E | T | L | D | T | G | K | A | Y | S | E | T | S | T | V | D | I | V | T | G | A | D | V | L | E | Y | Y | A | G | L | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | P | A | L | E | G | S | Q | I | P | L | R | E | T | S | F | V | Y | T | R | R | E | P | L | G | V | V | A | G | I | G | A | W | N | Y | P | I | Q | I | A | L | W | K | S | A | P | A | L | A | A | G | N | A | M | I | F | K | P | S | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | P | L | T | A | L | K | L | A | E | I | Y | S | E | A | G | L | P | D | G | V | F | N | V | L | P | G | V | G | A | E | T | G | Q | Y | L | T | E | H | P | G | I | A | K | V | S | F | T | G | G | V | A | S | G | K | K | V | M | A | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | S | A | A | S | S | L | K | E | V | T | M | E | L | G | G | K | S | P | L | I | V | F | D | D | A | D | L | D | L | A | A | D | I | A | M | M | A | N | F | F | S | S | G | Q | V | C | T | N | G | T | R | V | F | V | P | A | K | C | K | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | A | F | E | Q | K | I | L | A | R | V | E | R | I | R | A | G | D | V | F | D | P | Q | T | N | F | G | P | L | V | S | F | P | H | R | D | N | V | L | R | Y | I | A | K | G | K | E | E | G | A | R | V | L | C | G | G | D | V | L | K | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | D | G | F | D | N | G | A | W | V | A | P | T | V | F | T | D | C | S | D | D | M | T | I | V | R | E | E | I | F | G | P | V | M | S | I | L | T | Y | E | S | E | D | E | V | I | R | R | A | N | D | T | D | Y | G | L | A | A | G | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | T | A | D | L | N | R | A | H | R | V | I | H | Q | L | E | A | G | I | C | W | I | N | T | W | G | E | S | P | A | E | M | P | V | G | G | Y | K | H | S | G | I | G | R | E | N | G | V | M | T | L | Q | S | Y | T | Q | V | K | S | I | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490
Sequence |  | V | E | M | A | K | F | Q | S | I | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2ve5H_ |

### PDB 2ve5 chain H

Region: 2 - 490
Aligned: 489
Modelled: 489
Confidence: 100.0%
Identity: 77%
PDB header:oxidoreductase
Chain: H: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa

Phyre2
2 |
| d1bxsa_ |

### PDB 1bxs chain A

Region: 2 - 488
Aligned: 483
Modelled: 483
Confidence: 100.0%
Identity: 39%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
3 |
| d1a4sa_ |

### PDB 1a4s chain A

Region: 3 - 490
Aligned: 485
Modelled: 488
Confidence: 100.0%
Identity: 51%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
4 |
| c3ed6B_ |

### PDB 3ed6 chain B

Region: 6 - 486
Aligned: 479
Modelled: 481
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: B: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus

Phyre2
5 |
| d1o9ja_ |

### PDB 1o9j chain A

Region: 2 - 488
Aligned: 483
Modelled: 487
Confidence: 100.0%
Identity: 39%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
6 |
| d1o04a_ |

### PDB 1o04 chain A

Region: 2 - 488
Aligned: 483
Modelled: 483
Confidence: 100.0%
Identity: 42%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
7 |
| d1ag8a_ |

### PDB 1ag8 chain A

Region: 2 - 488
Aligned: 483
Modelled: 487
Confidence: 100.0%
Identity: 43%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
8 |
| c2o2qA_ |

### PDB 2o2q chain A

Region: 6 - 483
Aligned: 474
Modelled: 478
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp

Phyre2
9 |
| c2d4eB_ |

### PDB 2d4e chain B

Region: 5 - 485
Aligned: 478
Modelled: 481
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde
PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8

Phyre2
10 |
| c3r31A_ |

### PDB 3r31 chain A

Region: 1 - 484
Aligned: 481
Modelled: 484
Confidence: 100.0%
Identity: 54%
PDB header:oxidoreductase
Chain: A: PDB Molecule:betaine aldehyde dehydrogenase;
PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens

Phyre2
11 |
| c3iwkB_ |

### PDB 3iwk chain B

Region: 6 - 488
Aligned: 479
Modelled: 483
Confidence: 100.0%
Identity: 41%
PDB header:oxidoreductase
Chain: B: PDB Molecule:aminoaldehyde dehydrogenase;
PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1)

Phyre2
12 |
| c3rh9A_ |

### PDB 3rh9 chain A

Region: 2 - 480
Aligned: 474
Modelled: 479
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+));
PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei

Phyre2
13 |
| c3i44A_ |

### PDB 3i44 chain A

Region: 4 - 481
Aligned: 474
Modelled: 478
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution

Phyre2
14 |
| c3k2wD_ |

### PDB 3k2w chain D

Region: 3 - 484
Aligned: 480
Modelled: 482
Confidence: 100.0%
Identity: 35%
PDB header:oxidoreductase
Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase;
PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c

Phyre2
15 |
| c2jg7G_ |

### PDB 2jg7 chain G

Region: 5 - 489
Aligned: 476
Modelled: 485
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: G: PDB Molecule:antiquitin;
PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity

Phyre2
16 |
| c3b4wA_ |

### PDB 3b4w chain A

Region: 5 - 485
Aligned: 476
Modelled: 481
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+

Phyre2
17 |
| d1wnda_ |

### PDB 1wnd chain A

Region: 6 - 483
Aligned: 472
Modelled: 478
Confidence: 100.0%
Identity: 38%
Fold: ALDH-like
Superfamily: ALDH-like
Family: ALDH-like

Phyre2
18 |
| c3ifgH_ |

### PDB 3ifg chain H

Region: 2 - 483
Aligned: 476
Modelled: 482
Confidence: 100.0%
Identity: 37%
PDB header:oxidoreductase
Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+);
PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2

Phyre2
19 |
| c3ek1C_ |

### PDB 3ek1 chain C

Region: 2 - 485
Aligned: 476
Modelled: 484
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: C: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308

Phyre2
20 |
| c3qanB_ |

### PDB 3qan chain B

Region: 5 - 484
Aligned: 472
Modelled: 478
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1;
PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2ve5H_ |
|  | 100.0 | 77 | PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa
2 | d1bxsa_ |
|  | 100.0 | 39 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
3 | d1a4sa_ |
|  | 100.0 | 51 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
4 | c3ed6B_ |
|  | 100.0 | 40 | PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus
5 | d1o9ja_ |
|  | 100.0 | 39 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
6 | d1o04a_ |
|  | 100.0 | 42 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
7 | d1ag8a_ |
|  | 100.0 | 43 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
8 | c2o2qA_ |
|  | 100.0 | 39 | PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp
9 | c2d4eB_ |
|  | 100.0 | 40 | PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8
10 | c3r31A_ |
|  | 100.0 | 54 | PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens
11 | c3iwkB_ |
|  | 100.0 | 41 | PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1)
12 | c3rh9A_ |
|  | 100.0 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei
13 | c3i44A_ |
|  | 100.0 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution
14 | c3k2wD_ |
|  | 100.0 | 35 | PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c
15 | c2jg7G_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity
16 | c3b4wA_ |
|  | 100.0 | 39 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+
17 | d1wnda_ |
|  | 100.0 | 38 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
18 | c3ifgH_ |
|  | 100.0 | 37 | PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2
19 | c3ek1C_ |
|  | 100.0 | 34 | PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308
20 | c3qanB_ |
|  | 100.0 | 30 | PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans
21 | d1uzba_ |
| not modelled | 100.0 | 32 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
22 | c1t90B_ |
| not modelled | 100.0 | 32 | PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis
23 | c3jz4C_ |
| not modelled | 100.0 | 37 | PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme
24 | c2w8qA_ |
| not modelled | 100.0 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa.
25 | d1euha_ |
| not modelled | 100.0 | 33 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
26 | c3prlD_ |
| not modelled | 100.0 | 33 | PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125
27 | c2hg2A_ |
| not modelled | 100.0 | 34 | PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase
28 | d1ky8a_ |
| not modelled | 100.0 | 31 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
29 | d1bi9a_ |
| not modelled | 100.0 | 40 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
30 | c3ju8B_ |
| not modelled | 100.0 | 30 | PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa.
31 | c3hazA_ |
| not modelled | 100.0 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein
32 | c3rosA_ |
| not modelled | 100.0 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus
33 | c2vroB_ |
| not modelled | 100.0 | 26 | PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400
34 | c3efvC_ |
| not modelled | 100.0 | 32 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad
35 | c3r64A_ |
| not modelled | 100.0 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum
36 | c3pqaA_ |
| not modelled | 100.0 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661
37 | d1ad3a_ |
| not modelled | 100.0 | 27 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
38 | c3v4cB_ |
| not modelled | 100.0 | 24 | PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021
39 | d1ez0a_ |
| not modelled | 100.0 | 25 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
40 | c3lnsD_ |
| not modelled | 100.0 | 26 | PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct
41 | c3k9dD_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e
42 | d1o20a_ |
| not modelled | 100.0 | 18 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
43 | c3my7A_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a
44 | c2h5gA_ |
| not modelled | 100.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase
45 | d1vlua_ |
| not modelled | 100.0 | 19 | Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like
46 | c1vluB_ |
| not modelled | 100.0 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution
47 | d1k75a_ |
| not modelled | 98.5 | 17 | Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD
48 | c2yvqA_ |
| not modelled | 42.9 | 11 | PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
49 | d1a9xa2 |
| not modelled | 40.4 | 15 | Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
50 | d1uz5a3 |
| not modelled | 33.2 | 14 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
51 | d1y5ea1 |
| not modelled | 30.9 | 21 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
52 | c2yukA_ |
| not modelled | 30.7 | 26 | PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog
53 | d1xxaa_ |
| not modelled | 28.1 | 18 | Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor
54 | c1uz5A_ |
| not modelled | 27.9 | 15 | PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
55 | c3jtpB_ |
| not modelled | 26.7 | 14 | PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca
56 | d2bona1 |
| not modelled | 26.6 | 18 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
57 | d2g2ca1 |
| not modelled | 26.6 | 14 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
58 | d1k99a_ |
| not modelled | 26.1 | 8 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
59 | d1e3ha5 |
| not modelled | 25.7 | 34 | Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like
60 | c2crjA_ |
| not modelled | 24.0 | 18 | PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2
61 | d1yuaa2 |
| not modelled | 23.8 | 18 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
62 | c2is8A_ |
| not modelled | 23.1 | 16 | PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
63 | d1o66a_ |
| not modelled | 22.4 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB
64 | c2ec4A_ |
| not modelled | 22.1 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1
65 | d1mkza_ |
| not modelled | 21.2 | 17 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
66 | d1j3xa_ |
| not modelled | 21.0 | 19 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
67 | c1j3xA_ |
| not modelled | 21.0 | 19 | PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2
68 | d2ioja1 |
| not modelled | 20.6 | 19 | Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain
69 | c3fghA_ |
| not modelled | 20.0 | 11 | PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b
70 | c3q3hA_ |
| not modelled | 19.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
71 | c2eqzA_ |
| not modelled | 19.6 | 16 | PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3
72 | c1eakA_ |
| not modelled | 19.5 | 20 | PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: catalytic domain of prommp-2 e404q mutant
73 | c1v9nA_ |
| not modelled | 19.2 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3
74 | c2co9A_ |
| not modelled | 18.5 | 10 | PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse
75 | d1xrha_ |
| not modelled | 18.2 | 18 | Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like
76 | c2pjkA_ |
| not modelled | 17.8 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
77 | d1j46a_ |
| not modelled | 16.7 | 14 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
78 | c1l6jA_ |
| not modelled | 16.5 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b).
79 | c3i0pA_ |
| not modelled | 16.4 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica
80 | d2lefa_ |
| not modelled | 15.9 | 11 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
81 | d1rfma_ |
| not modelled | 15.8 | 19 | Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like
82 | c2cs1A_ |
| not modelled | 15.8 | 16 | PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein
83 | c3uoeB_ |
| not modelled | 15.7 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
84 | d1v64a_ |
| not modelled | 15.5 | 11 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
85 | d1s7ia_ |
| not modelled | 15.4 | 8 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946)
86 | c1vbiA_ |
| not modelled | 15.1 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
87 | d1hsma_ |
| not modelled | 14.9 | 13 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
88 | c2nqqA_ |
| not modelled | 14.7 | 13 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q
89 | d1u0ta_ |
| not modelled | 14.7 | 13 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like
90 | d2ftsa3 |
| not modelled | 14.4 | 19 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
91 | d1nxua_ |
| not modelled | 14.4 | 25 | Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like
92 | d1s99a_ |
| not modelled | 14.4 | 12 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:Putative thiamin/HMP-binding protein YkoF
93 | d1lwma_ |
| not modelled | 14.0 | 13 | Fold:HMG-box Superfamily:HMG-box Family:HMG-box
94 | c2l69A_ |
| not modelled | 13.8 | 13 | PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
95 | d2fiua1 |
| not modelled | 13.6 | 16 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like
96 | c3lo3E_ |
| not modelled | 13.4 | 15 | PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h.
97 | d1wu2a3 |
| not modelled | 13.2 | 20 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
98 | c1wtjB_ |
| not modelled | 13.2 | 12 | PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato
99 | c1b4aA_ |
| not modelled | 13.1 | 14 | PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0