Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	L	S	F	V	T	R	W	R	D	E	L	P	E	T	Y	T	A	L	S	P	T	P	L	N	N	A	R	L	I	W	H	N	T	E	L	A	N	T	L	S	I	P	S	S	L	F	K	N	G	A	G	V	W	G	G	E	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	P	G	M	S	P	L	A	Q	V	Y	S	G	H	Q	F	G	V	W	A	G	Q	L	G	D	G	R	G	I	L	L	G	E	Q	L	L	A	D	G	T	T	M	D	W	H	L	K	G	A	G	L	T	P	Y	S	R	M	G	D	G
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	A	V	L	R	S	T	I	R	E	S	L	A	S	E	A	M	H	Y	L	G	I	P	T	T	R	A	L	S	I	V	T	S	D	S	P	V	Y	R	E	T	A	E	P	G	A	M	L	M	R	V	A	P	S	H	L	R	F	G	H
Secondary structure
SS confidence
Disorder																																				?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	E	H	F	Y	Y	R	R	E	S	E	K	V	R	Q	L	A	D	F	A	I	R	H	Y	W	S	H	L	A	D	D	E	D	K	Y	R	L	W	F	S	D	V	V	A	R	T	A	S	L	I	A	Q	W	Q	T	V	G	F	A	H
Secondary structure
SS confidence
Disorder									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	V	M	N	T	D	N	M	S	L	L	G	L	T	L	D	Y	G	P	F	G	F	L	D	D	Y	E	P	G	F	I	C	N	H	S	D	H	Q	G	R	Y	S	F	D	N	Q	P	A	V	A	L	W	N	L	Q	R	L	A	Q	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	S	P	F	V	A	V	D	A	L	N	E	A	L	D	S	Y	Q	Q	V	L	L	T	H	Y	G	E	R	M	R	Q	K	L	G	F	M	T	E	Q	K	E	D	N	A	L	L	N	E	L	F	S	L	M	A	R	E	R	S	D	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	R	T	F	R	M	L	S	L	T	E	Q	H	S	A	A	S	P	L	R	D	E	F	I	D	R	A	A	F	D	D	W	F	A	R	Y	R	G	R	L	Q	Q	D	E	V	S	D	S	E	R	Q	Q	L	M	Q	S	V	N	P	A
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?						?																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Sequence		L	V	L	R	N	W	L	A	Q	R	A	I	E	A	A	E	K	G	D	M	T	E	L	H	R	L	H	E	A	L	R	N	P	F	S	D	R	D	D	D	Y	V	S	R	P	P	D	W	G	K	R	L	E	V	S	C	S	S
Secondary structure
SS confidence
Disorder																																																								?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ppq chain A domain 1 Region: 118 - 262 Aligned: 144 Modelled: 142 Confidence: 90.7% Identity: 13% Fold: Protein kinase-like (PK-like) Superfamily: Protein kinase-like (PK-like) Family: APH phosphotransferases Phyre2 PDB 1zyl chain A domain 1 Region: 80 - 262 Aligned: 176 Modelled: 183 Confidence: 84.1% Identity: 10% Fold: Protein kinase-like (PK-like) Superfamily: Protein kinase-like (PK-like) Family: APH phosphotransferases Phyre2 PDB 3dxq chain B Region: 99 - 266 Aligned: 164 Modelled: 168 Confidence: 79.8% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:choline/ethanolamine kinase family protein; PDBTitle: crystal structure of choline/ethanolamine kinase family protein2 (np_106042.1) from mesorhizobium loti at 2.55 a resolution Phyre2 PDB 1nd4 chain A Region: 104 - 317 Aligned: 189 Modelled: 189 Confidence: 67.5% Identity: 15% Fold: Protein kinase-like (PK-like) Superfamily: Protein kinase-like (PK-like) Family: APH phosphotransferases Phyre2 PDB 3akj chain B Region: 98 - 332 Aligned: 207 Modelled: 212 Confidence: 58.5% Identity: 9% PDB header:transferase Chain: B: PDB Molecule:ctka; PDBTitle: crystal structure of a helicobacter pylori proinflammatory kinase ctka Phyre2 PDB 3ovc chain A Region: 116 - 264 Aligned: 134 Modelled: 149 Confidence: 50.2% Identity: 13% PDB header:transferase/antibiotic Chain: A: PDB Molecule:hygromycin-b 4-o-kinase; PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(4)-ia Phyre2 PDB 2j0k chain B Region: 216 - 358 Aligned: 136 Modelled: 143 Confidence: 47.1% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:focal adhesion kinase 1; PDBTitle: crystal structure of a fragment of focal adhesion kinase2 containing the ferm and kinase domains. Phyre2 PDB 1u0b chain B Region: 110 - 157 Aligned: 42 Modelled: 48 Confidence: 40.6% Identity: 24% PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys Phyre2 PDB 1zp9 chain A Region: 211 - 258 Aligned: 45 Modelled: 46 Confidence: 40.1% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:rio1 kinase; PDBTitle: crystal structure of full-legnth a.fulgidus rio1 serine kinase bound2 to atp and mn2+ ions. Phyre2 PDB 2vza chain D Region: 422 - 453 Aligned: 32 Modelled: 32 Confidence: 39.6% Identity: 25% PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa Phyre2 PDB 1dx4 chain A Region: 237 - 292 Aligned: 56 Modelled: 56 Confidence: 39.5% Identity: 23% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Acetylcholinesterase-like Phyre2 PDB 1unh chain D Region: 190 - 240 Aligned: 49 Modelled: 51 Confidence: 37.9% Identity: 29% PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. Phyre2 PDB 1unl chain D Region: 190 - 240 Aligned: 49 Modelled: 51 Confidence: 37.6% Identity: 29% Fold: Cyclin-like Superfamily: Cyclin-like Family: Cyclin Phyre2 PDB 2i8d chain A domain 1 Region: 312 - 366 Aligned: 54 Modelled: 55 Confidence: 37.2% Identity: 13% Fold: Secretion chaperone-like Superfamily: YdhG-like Family: YdhG-like Phyre2 PDB 1zar chain A domain 2 Region: 219 - 258 Aligned: 40 Modelled: 40 Confidence: 34.9% Identity: 18% Fold: Protein kinase-like (PK-like) Superfamily: Protein kinase-like (PK-like) Family: RIO1-like kinases Phyre2 PDB 3dxp chain A Region: 116 - 264 Aligned: 145 Modelled: 149 Confidence: 34.1% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:putative acyl-coa dehydrogenase; PDBTitle: crystal structure of a putative aminoglycoside phosphotransferase2 (reut_a1007) from ralstonia eutropha jmp134 at 2.32 a resolution Phyre2 PDB 1dgj chain A domain 4 Region: 35 - 146 Aligned: 102 Modelled: 112 Confidence: 34.0% Identity: 23% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1p0i chain A Region: 237 - 292 Aligned: 50 Modelled: 56 Confidence: 33.0% Identity: 22% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: Acetylcholinesterase-like Phyre2 PDB 2f2a chain B domain 1 Region: 211 - 256 Aligned: 45 Modelled: 46 Confidence: 32.3% Identity: 18% Fold: GatB/YqeY motif Superfamily: GatB/YqeY motif Family: GatB/GatE C-terminal domain-like Phyre2 PDB 3e7e chain A Region: 216 - 282 Aligned: 67 Modelled: 67 Confidence: 31.5% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1; PDBTitle: structure and substrate recruitment of the human spindle checkpoint2 kinase bub Phyre2 1 d2ppqa1 2 d1zyla1 3 c3dxqB_ 4 d1nd4a_ 5 c3akjB_ 6 c3ovcA_ 7 c2j0kB_ 8 c1u0bB_ 9 c1zp9A_ 10 c2vzaD_ 11 d1dx4a_ 12 c1unhD_ 13 d1unld_ 14 d2i8da1 15 d1zara2 16 c3dxpA_ 17 d1dgja4 18 d1p0ia_ 19 d2f2ab1 20 c3e7eA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ppqa1 90.7 13 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 2 d1zyla1 84.1 10 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 3 c3dxqB_ 79.8 18 PDB header:transferase Chain: B: PDB Molecule:choline/ethanolamine kinase family protein; PDBTitle: crystal structure of choline/ethanolamine kinase family protein2 (np_106042.1) from mesorhizobium loti at 2.55 a resolution 4 d1nd4a_ 67.5 15 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 5 c3akjB_ 58.5 9 PDB header:transferase Chain: B: PDB Molecule:ctka; PDBTitle: crystal structure of a helicobacter pylori proinflammatory kinase ctka 6 c3ovcA_ 50.2 13 PDB header:transferase/antibiotic Chain: A: PDB Molecule:hygromycin-b 4-o-kinase; PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(4)-ia 7 c2j0kB_ 47.1 13 PDB header:transferase Chain: B: PDB Molecule:focal adhesion kinase 1; PDBTitle: crystal structure of a fragment of focal adhesion kinase2 containing the ferm and kinase domains. 8 c1u0bB_ 40.6 24 PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys 9 c1zp9A_ 40.1 24 PDB header:transferase Chain: A: PDB Molecule:rio1 kinase; PDBTitle: crystal structure of full-legnth a.fulgidus rio1 serine kinase bound2 to atp and mn2+ ions. 10 c2vzaD_ 39.6 25 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 11 d1dx4a_ 39.5 23 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 12 c1unhD_ 37.9 29 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 13 d1unld_ 37.6 29 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 14 d2i8da1 37.2 13 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 15 d1zara2 34.9 18 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:RIO1-like kinases 16 c3dxpA_ 34.1 11 PDB header:transferase Chain: A: PDB Molecule:putative acyl-coa dehydrogenase; PDBTitle: crystal structure of a putative aminoglycoside phosphotransferase2 (reut_a1007) from ralstonia eutropha jmp134 at 2.32 a resolution 17 d1dgja4 34.0 23 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 18 d1p0ia_ 33.0 22 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 19 d2f2ab1 32.3 18 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like 20 c3e7eA_ 31.5 21 PDB header:transferase Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1; PDBTitle: structure and substrate recruitment of the human spindle checkpoint2 kinase bub 21 c2pm8A_ not modelled 31.0 22 PDB header:hydrolase Chain: A: PDB Molecule:cholinesterase; PDBTitle: crystal structure of recombinant full length human2 butyrylcholinesterase 22 c1vlbA_ not modelled 31.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 23 c3k1sE_ not modelled 27.9 23 PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis 24 c1q5vB_ not modelled 26.5 28 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 25 d1dfoa_ not modelled 25.4 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 26 c3l8rA_ not modelled 24.1 9 PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans 27 c3eu8D_ not modelled 23.5 38 PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution 28 d1j7la_ not modelled 23.2 27 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 29 c1wcrA_ not modelled 23.1 27 PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose 30 d2e2aa_ not modelled 22.5 32 Fold:Spectrin repeat-like Superfamily:Enzyme IIa from lactose specific PTS, IIa-lac Family:Enzyme IIa from lactose specific PTS, IIa-lac 31 d2ha2a1 not modelled 22.4 26 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 32 d1vlya1 not modelled 22.2 21 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 33 c2zqeA_ not modelled 22.0 44 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 34 d1bwva2 not modelled 21.9 17 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 35 c2xm5A_ not modelled 21.5 21 PDB header:transferase Chain: A: PDB Molecule:cloq; PDBTitle: structural and mechanistic analysis of the magnesium-2 independent aromatic prenyltransferase cloq from the3 clorobiocin biosynthetic pathway 36 d2burb1 not modelled 21.2 25 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase 37 d1g8fa3 not modelled 21.1 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 38 d1qe3a_ not modelled 20.2 27 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 39 d1wdka2 not modelled 20.0 13 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 40 d1f6wa_ not modelled 19.4 29 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 41 d1tzva_ not modelled 19.3 6 Fold:NusB-like Superfamily:NusB-like Family:Antitermination factor NusB 42 c3f7wA_ not modelled 18.9 14 PDB header:transferase Chain: A: PDB Molecule:putative fructosamine-3-kinase; PDBTitle: crystal structure of putative fructosamine-3-kinase (yp_290396.1) from2 thermobifida fusca yx-er1 at 1.85 a resolution 43 d2oc6a1 not modelled 18.8 11 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 44 c3attA_ not modelled 18.7 13 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv3168 with atp 45 c3h0mE_ not modelled 18.6 12 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 46 d2apla1 not modelled 18.2 11 Fold:PG0816-like Superfamily:PG0816-like Family:PG0816-like 47 c3al0B_ not modelled 18.1 15 PDB header:ligase/rna Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b; PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. 48 c2ogsA_ not modelled 17.9 22 PDB header:hydrolase Chain: A: PDB Molecule:thermostable carboxylesterase est50; PDBTitle: crystal structure of the geobacillus stearothermophilus2 carboxylesterase est55 at ph 6.2 49 c3en9B_ not modelled 17.7 15 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 50 c1f8uA_ not modelled 17.6 26 PDB header:hydrolase/toxin Chain: A: PDB Molecule:acetylcholinesterase; PDBTitle: crystal structure of mutant e202q of human acetylcholinesterase2 complexed with green mamba venom peptide fasciculin-ii 51 d1f8ua_ not modelled 17.6 26 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 52 d1s9aa_ not modelled 17.6 19 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase 53 d2ozla1 not modelled 17.6 18 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 54 c3csvA_ not modelled 16.9 10 PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: crystal structure of a putative aminoglycoside phosphotransferase2 (yp_614837.1) from silicibacter sp. tm1040 at 2.15 a resolution 55 d2pyqa1 not modelled 16.6 15 Fold:Jann4075-like Superfamily:Jann4075-like Family:Jann4075-like 56 c2g5iB_ not modelled 16.3 17 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 57 d1ug0a_ not modelled 16.2 26 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 58 c2w1jB_ not modelled 15.6 14 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae 59 c3ecdC_ not modelled 15.3 13 PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei 60 d3pccm_ not modelled 15.2 29 Fold:Prealbumin-like Superfamily:Aromatic compound dioxygenase Family:Aromatic compound dioxygenase 61 c2q83A_ not modelled 15.1 18 PDB header:transferase Chain: A: PDB Molecule:ytaa protein; PDBTitle: crystal structure of ytaa (2635576) from bacillus subtilis at 2.50 a2 resolution 62 d2axtf1 not modelled 15.1 56 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 63 c1w5cL_ not modelled 15.0 56 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b559 beta subunit; PDBTitle: photosystem ii from thermosynechococcus elongatus 64 d1xm8a_ not modelled 14.9 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Glyoxalase II (hydroxyacylglutathione hydrolase) 65 d1q7ea_ not modelled 14.8 15 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 66 c3izcs_ not modelled 14.4 35 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 67 c2x1cA_ not modelled 13.9 14 PDB header:transferase Chain: A: PDB Molecule:acyl-coenzyme PDBTitle: the crystal structure of precursor acyl coenzyme2 a:isopenicillin n acyltransferase from penicillium3 chrysogenum 68 c2v1nA_ not modelled 13.9 19 PDB header:nuclear protein Chain: A: PDB Molecule:protein kin homolog; PDBTitle: solution structure of the region 51-160 of human kin172 reveals a winged helix fold 69 c2djcA_ not modelled 13.6 40 PDB header:cytokine Chain: A: PDB Molecule:growth-blocking peptide; PDBTitle: solution structure of growth-blocking peptide of the2 tobacco cutworm, spodoptera litura 70 c3fc7B_ not modelled 13.6 20 PDB header:transferase Chain: B: PDB Molecule:htr-like protein; PDBTitle: the crystal structure of a domain of htr-like protein from haloarcula2 marismortui atcc 43049 71 c2dzrA_ not modelled 13.4 21 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna 72 c3isyA_ not modelled 12.8 10 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 73 c3qd7X_ not modelled 12.5 26 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 74 d1ylxa1 not modelled 12.5 22 Fold:N domain of copper amine oxidase-like Superfamily:GK1464-like Family:GK1464-like 75 c1irrA_ not modelled 12.5 40 PDB header:cytokine Chain: A: PDB Molecule:paralytic peptide; PDBTitle: solution structure of paralytic peptide of the silkworm,2 bombyx mori 76 c1zawU_ not modelled 12.3 36 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 77 c1zawW_ not modelled 12.3 36 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 78 c1zawV_ not modelled 12.3 36 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 79 c1zaxZ_ not modelled 12.1 36 PDB header:structural protein Chain: Z: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 80 d2d9ia1 not modelled 12.1 19 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 81 c3o0pA_ not modelled 11.9 8 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 82 c2hyiJ_ not modelled 11.8 44 PDB header:hydrolase/rna binding protein/rna Chain: J: PDB Molecule:protein casc3; PDBTitle: structure of the human exon junction complex with a trapped2 dead-box helicase bound to rna 83 c3i0oA_ not modelled 11.7 9 PDB header:transferase Chain: A: PDB Molecule:spectinomycin phosphotransferase; PDBTitle: crystal structure of spectinomycin phosphotransferase,2 aph(9)-ia, in complex with adp and spectinomcyin 84 d2pnwa1 not modelled 11.7 16 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 85 c3ex7I_ not modelled 11.6 40 PDB header:hydrolase/rna binding protein/rna Chain: I: PDB Molecule:protein casc3; PDBTitle: the crystal structure of ejc in its transition state 86 c1zaxY_ not modelled 11.5 37 PDB header:structural protein Chain: Y: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 87 c1zaxX_ not modelled 11.5 37 PDB header:structural protein Chain: X: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 88 c1zavY_ not modelled 11.5 37 PDB header:structural protein Chain: Y: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 89 c1zavX_ not modelled 11.5 37 PDB header:structural protein Chain: X: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 90 c2dzqA_ not modelled 11.5 17 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna 91 c1zavW_ not modelled 11.4 36 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 92 c1zaxW_ not modelled 11.4 36 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 93 c1zaxU_ not modelled 11.4 36 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 94 c1zavU_ not modelled 11.4 36 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 95 d1zavu1 not modelled 11.4 36 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 96 c1zavV_ not modelled 11.4 36 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 97 c1zaxV_ not modelled 11.4 36 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 98 c1dd3C_ not modelled 11.2 36 PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima 99 c1dd3D_ not modelled 11.2 36 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0