Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	H	G	L	L	A	L	I	C	W	L	C	C	V	V	A	H	S	E	M	L	N	V	E	Q	S	G	L	F	R	A	W	F	V	R	I	A	Q	E	Q	L	R	Q	G	P	S	P	R	W	Y	Q	Q	D	C	A	G	L	V	R
Secondary structure
SS confidence
Disorder		?	?	?	?																			?																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	A	A	N	E	T	L	K	V	H	D	S	K	W	L	K	S	N	G	L	S	S	Q	Y	L	P	P	E	M	T	L	T	P	E	Q	R	Q	L	A	Q	N	W	N	Q	G	N	G	K	T	G	P	Y	V	T	A	I	N	L	I	Q
Secondary structure
SS confidence
Disorder												?						?	?		?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	N	S	Q	F	I	G	Q	D	I	N	Q	A	L	P	G	D	M	I	F	F	D	Q	G	D	A	Q	H	L	M	V	W	M	G	R	Y	V	I	Y	H	T	G	S	A	T	K	T	D	N	G	M	R	A	V	S	L	Q	Q	L	M
Secondary structure
SS confidence
Disorder									?	?			?	?	?																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence		T	W	K	D	T	R	W	I	P	N	D	S	N	P	N	F	I	G	I	Y	R	L	N	F	L	A	R
Secondary structure
SS confidence
Disorder																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2evr chain A domain 2 Region: 22 - 178 Aligned: 113 Modelled: 116 Confidence: 98.6% Identity: 22% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 2xiv chain A Region: 54 - 176 Aligned: 76 Modelled: 91 Confidence: 98.6% Identity: 24% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3gt2 chain A Region: 24 - 163 Aligned: 94 Modelled: 92 Confidence: 98.5% Identity: 19% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 3pbi chain A Region: 54 - 176 Aligned: 76 Modelled: 84 Confidence: 98.3% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 2fg0 chain B Region: 54 - 178 Aligned: 79 Modelled: 79 Confidence: 98.3% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 2k1g chain A Region: 30 - 202 Aligned: 115 Modelled: 130 Confidence: 98.3% Identity: 15% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 3i86 chain A Region: 54 - 166 Aligned: 67 Modelled: 67 Confidence: 98.1% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 3npf chain B Region: 54 - 160 Aligned: 67 Modelled: 68 Confidence: 97.8% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 3h41 chain A Region: 129 - 178 Aligned: 47 Modelled: 50 Confidence: 96.4% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 3m1u chain B Region: 31 - 161 Aligned: 96 Modelled: 99 Confidence: 95.6% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2kyt chain A Region: 134 - 178 Aligned: 45 Modelled: 45 Confidence: 94.8% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 3kw0 chain D Region: 130 - 205 Aligned: 69 Modelled: 76 Confidence: 92.1% Identity: 22% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2if6 chain A domain 1 Region: 132 - 180 Aligned: 43 Modelled: 49 Confidence: 87.9% Identity: 28% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 2p1g chain A Region: 130 - 204 Aligned: 62 Modelled: 75 Confidence: 82.4% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 2isb chain A domain 1 Region: 129 - 175 Aligned: 41 Modelled: 41 Confidence: 58.4% Identity: 34% Fold: The "swivelling" beta/beta/alpha domain Superfamily: FumA C-terminal domain-like Family: FumA C-terminal domain-like Phyre2 PDB 3kop chain B Region: 134 - 165 Aligned: 32 Modelled: 32 Confidence: 46.0% Identity: 34% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution Phyre2 PDB 1zce chain A domain 1 Region: 130 - 175 Aligned: 29 Modelled: 25 Confidence: 34.0% Identity: 21% Fold: PUA domain-like Superfamily: PUA domain-like Family: Atu2648/PH1033-like Phyre2 PDB 1t61 chain C domain 1 Region: 151 - 164 Aligned: 14 Modelled: 14 Confidence: 33.3% Identity: 29% Fold: C-type lectin-like Superfamily: C-type lectin-like Family: Noncollagenous (NC1) domain of collagen IV Phyre2 PDB 2iw0 chain A domain 1 Region: 169 - 187 Aligned: 19 Modelled: 19 Confidence: 29.4% Identity: 26% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1t61 chain A domain 1 Region: 151 - 164 Aligned: 14 Modelled: 14 Confidence: 29.1% Identity: 21% Fold: C-type lectin-like Superfamily: C-type lectin-like Family: Noncollagenous (NC1) domain of collagen IV Phyre2 1 d2evra2 2 c2xivA_ 3 c3gt2A_ 4 c3pbiA_ 5 c2fg0B_ 6 c2k1gA_ 7 c3i86A_ 8 c3npfB_ 9 c3h41A_ 10 c3m1uB_ 11 c2kytA_ 12 c3kw0D_ 13 d2if6a1 14 c2p1gA_ 15 d2isba1 16 c3kopB_ 17 d1zcea1 18 d1t61c1 19 d2iw0a1 20 d1t61a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2evra2 98.6 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 2 c2xivA_ 98.6 24 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 3 c3gt2A_ 98.5 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 4 c3pbiA_ 98.3 25 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 5 c2fg0B_ 98.3 24 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 6 c2k1gA_ 98.3 15 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 7 c3i86A_ 98.1 31 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 8 c3npfB_ 97.8 18 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 9 c3h41A_ 96.4 26 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 10 c3m1uB_ 95.6 14 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 11 c2kytA_ 94.8 20 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 12 c3kw0D_ 92.1 22 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 13 d2if6a1 87.9 28 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 14 c2p1gA_ 82.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 15 d2isba1 58.4 34 Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like 16 c3kopB_ 46.0 34 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 17 d1zcea1 34.0 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 18 d1t61c1 33.3 29 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Noncollagenous (NC1) domain of collagen IV 19 d2iw0a1 29.4 26 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 20 d1t61a1 29.1 21 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Noncollagenous (NC1) domain of collagen IV 21 d1o9ya_ not modelled 26.0 12 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 22 c2kncB_ not modelled 24.8 24 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 23 d1ofla_ not modelled 24.4 15 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 24 d1swxa_ not modelled 23.4 13 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 25 c2iw0A_ not modelled 22.7 26 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 26 d1li1c1 not modelled 22.5 21 Fold:C-type lectin-like Superfamily:C-type lectin-like Family:Noncollagenous (NC1) domain of collagen IV 27 c2wbqA_ not modelled 22.0 40 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 28 d2ixma1 not modelled 21.5 25 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 29 d2gica1 not modelled 20.1 38 Fold:Rhabdovirus nucleoprotein-like Superfamily:Rhabdovirus nucleoprotein-like Family:Rhabdovirus nucleocapsid protein 30 d1c0aa2 not modelled 19.7 57 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 31 c3emrA_ not modelled 19.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 32 c2g62A_ not modelled 18.9 25 PDB header:hydrolase activator Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53); PDBTitle: crystal structure of human ptpa 33 d1o6aa_ not modelled 18.8 12 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 34 d1ds1a_ not modelled 17.7 33 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 35 c3gipB_ not modelled 16.3 21 PDB header:hydrolase Chain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions. 36 c1dbgA_ not modelled 15.4 15 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 37 d2ar1a1 not modelled 15.2 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 38 d1l0wa2 not modelled 15.2 36 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 39 c1dfwA_ not modelled 15.1 100 PDB header:immune system Chain: A: PDB Molecule:lung surfactant protein b; PDBTitle: conformational mapping of the n-terminal segment of2 surfactant protein b in lipid using 13c-enhanced fourier3 transform infrared spectroscopy (ftir) 40 d1hq0a_ not modelled 14.8 19 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:Type 1 cytotoxic necrotizing factor, catalytic domain 41 d2gtta1 not modelled 14.6 56 Fold:Rhabdovirus nucleoprotein-like Superfamily:Rhabdovirus nucleoprotein-like Family:Rhabdovirus nucleocapsid protein 42 d1vk3a3 not modelled 14.3 30 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 43 c2ysxA_ not modelled 13.5 9 PDB header:signaling protein Chain: A: PDB Molecule:signaling inositol polyphosphate phosphatase PDBTitle: solution structure of the human ship sh2 domain 44 d1leha2 not modelled 13.4 25 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 45 d2adza1 not modelled 13.3 20 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 46 c2fvmA_ not modelled 13.2 14 PDB header:hydrolase Chain: A: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from saccharomyces kluyveri2 in complex with the reaction product n-carbamyl-beta-alanine 47 c1rjqA_ not modelled 13.0 21 PDB header:hydrolase Chain: A: PDB Molecule:d-aminoacylase; PDBTitle: the crystal structure of the d-aminoacylase mutant d366a 48 c2rdsA_ not modelled 13.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 49 c3nnlB_ not modelled 13.0 40 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 50 c2og5A_ not modelled 13.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 51 d2ixna1 not modelled 12.9 16 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 52 d1hcza1 not modelled 12.4 64 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Cytochrome f, large domain Family:Cytochrome f, large domain 53 d1pvda1 not modelled 12.4 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 54 c1t60W_ not modelled 12.3 25 PDB header:structural protein Chain: W: PDB Molecule:type iv collagen; PDBTitle: crystal structure of type iv collagen nc1 domain from2 bovine lens capsule 55 d2z1ea2 not modelled 12.2 38 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 56 c3lv4B_ not modelled 12.0 26 PDB header:hydrolase Chain: B: PDB Molecule:glycoside hydrolase yxia; PDBTitle: crystal structure of the glycoside hydrolase, family 43 yxia2 protein from bacillus licheniformis. northeast structural3 genomics consortium target bir14. 57 d1jz8a3 not modelled 11.9 27 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 58 c3mt1B_ not modelled 11.8 14 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 59 d2a1xa1 not modelled 11.8 36 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 60 c1t60R_ not modelled 11.4 25 PDB header:structural protein Chain: R: PDB Molecule:type iv collagen; PDBTitle: crystal structure of type iv collagen nc1 domain from2 bovine lens capsule 61 d1fi4a2 not modelled 11.2 15 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate 5-diphosphate decarboxylase 62 c1lehB_ not modelled 11.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:leucine dehydrogenase; PDBTitle: leucine dehydrogenase from bacillus sphaericus 63 d1iufa1 not modelled 10.9 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 64 d1zpda1 not modelled 10.6 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 65 c1fi4A_ not modelled 10.5 15 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 66 d1ovma1 not modelled 10.5 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 67 d2zoda2 not modelled 10.3 25 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 68 d2gbsa1 not modelled 10.2 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 69 d1c1da2 not modelled 9.8 29 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 70 c2kafA_ not modelled 9.8 28 PDB header:viral protein, rna binding protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: solution structure of the sars-unique domain-c from the2 nonstructural protein 3 (nsp3) of the severe acute3 respiratory syndrome coronavirus 71 d1o5ua_ not modelled 9.8 33 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 72 c2opwA_ not modelled 9.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 73 d2j0pa1 not modelled 9.5 38 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 74 d2coha2 not modelled 9.2 12 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:cAMP-binding domain 75 c3hqjA_ not modelled 9.2 40 PDB header:transferase Chain: A: PDB Molecule:holo-[acyl-carrier-protein] synthase; PDBTitle: structure-function analysis of mycobacterium tuberculosis2 acyl carrier protein synthase (acps). 76 d1gxha_ not modelled 9.1 36 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 77 d1k3xa2 not modelled 8.9 18 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 78 c2y9xG_ not modelled 8.9 44 PDB header:oxidoreductase Chain: G: PDB Molecule:lectin-like fold protein; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 79 c3k2zA_ not modelled 8.8 14 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 80 d2es7a1 not modelled 8.7 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 81 c3f0nB_ not modelled 8.7 20 PDB header:lyase Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase 82 c2uz8A_ not modelled 8.6 18 PDB header:rna-binding protein Chain: A: PDB Molecule:eukaryotic translation elongation factor 1 PDBTitle: the crystal structure of p18, human translation elongation2 factor 1 epsilon 1 83 c3mazA_ not modelled 8.5 14 PDB header:signaling protein Chain: A: PDB Molecule:signal-transducing adaptor protein 1; PDBTitle: crystal structure of the human brdg1/stap-1 sh2 domain in complex with2 the ntal ptyr136 peptide 84 d2io8a2 not modelled 8.2 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 85 c1zzpA_ not modelled 8.2 18 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1; PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl 86 d1ayia_ not modelled 8.1 27 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 87 c2hnfA_ not modelled 8.1 24 PDB header:viral protein Chain: A: PDB Molecule:repressor protein ci101-229dm-k192a; PDBTitle: structure of a hyper-cleavable monomeric fragment of phage2 lambda repressor containing the cleavage site region 88 d2ixoa1 not modelled 8.0 6 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 89 d2vlqa1 not modelled 7.6 36 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 90 c2no8A_ not modelled 7.6 36 PDB header:immune system Chain: A: PDB Molecule:colicin-e2 immunity protein; PDBTitle: nmr structure analysis of the colicin immuntiy protein im2 91 c2jx0A_ not modelled 7.5 24 PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: the paxillin-binding domain (pbd) of g protein coupled2 receptor (gpcr)-kinase (grk) interacting protein 1 (git1) 92 d1c3ga1 not modelled 7.5 13 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 93 d2pyta1 not modelled 7.5 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 94 d3c9ua2 not modelled 7.4 50 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 95 c3qrxB_ not modelled 7.3 67 PDB header:metal binding protein/toxin Chain: B: PDB Molecule:melittin; PDBTitle: chlamydomonas reinhardtii centrin bound to melittin 96 d1uv4a1 not modelled 7.3 23 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 97 d2c9wa2 not modelled 7.1 11 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 98 d1jr7a_ not modelled 7.1 13 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 99 c2jemB_ not modelled 7.0 26 PDB header:hydrolase Chain: B: PDB Molecule:endo-beta-1,4-glucanase; PDBTitle: native family 12 xyloglucanase from bacillus licheniformis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0