Secondary structure and disorder prediction

1

.

.

.

.

.

.

.

.

10

.

.

.

.

.

.

.

.

.

20

.

.

.

.

.

.

.

.

.

30

.

.

.

.

.

.

.

.

.

40

.

.

.

.

.

.

.

.

.

50

.

.

.

.

.

.

.

.

.

60

Sequence

M

Q

K

N

A

A

H

T

Y

A

I

S

S

L

L

V

L

S

L

T

G

C

A

W

I

P

S

T

P

L

V

Q

G

A

T

S

A

Q

P

V

P

G

P

T

P

V

A

N

G

S

I

F

Q

S

A

Q

P

I

N

Y

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

70

.

.

.

.

.

.

.

.

.

80

.

.

.

.

.

.

.

.

.

90

.

.

.

.

.

.

.

.

.

100

.

.

.

.

.

.

.

.

.

110

.

.

.

.

.

.

.

.

.

120

Sequence

G

Y

Q

P

L

F

E

D

R

R

P

R

N

I

G

D

T

L

T

I

V

L

Q

E

N

V

S

A

S

K

S

S

S

A

N

A

S

R

D

G

K

T

N

F

G

F

D

T

V

P

R

Y

L

Q

G

L

F

G

N

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

130

.

.

.

.

.

.

.

.

.

140

.

.

.

.

.

.

.

.

.

150

.

.

.

.

.

.

.

.

.

160

.

.

.

.

.

.

.

.

.

170

.

.

.

.

.

.

.

.

.

180

Sequence

R

A

D

V

E

A

S

G

G

N

T

F

N

G

K

G

G

A

N

A

S

N

T

F

S

G

T

L

T

V

T

V

D

Q

V

L

V

N

G

N

L

H

V

V

G

E

K

Q

I

A

I

N

Q

G

T

E

F

I

R

F

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

190

.

.

.

.

.

.

.

.

.

200

.

.

.

.

.

.

.

.

.

210

.

.

.

.

.

.

.

.

.

220

.

.

.

.

.

.

.

.

.

230

.

.

Sequence

S

G

V

V

N

P

R

T

I

S

G

S

N

T

V

P

S

T

Q

V

A

D

A

R

I

E

Y

V

G

N

G

Y

I

N

E

A

Q

N

M

G

W

L

Q

R

F

F

L

N

L

S

P

M

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ah9 chain A Region: 146 - 185 Aligned: 35 Modelled: 40 Confidence: 61.4% Identity: 26% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3i4o chain A Region: 147 - 164 Aligned: 18 Modelled: 18 Confidence: 57.8% Identity: 17% PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis Phyre2 PDB 1m9s chain A domain 4 Region: 163 - 191 Aligned: 26 Modelled: 29 Confidence: 51.1% Identity: 19% Fold: SH3-like barrel Superfamily: Prokaryotic SH3-related domain Family: GW domain Phyre2 PDB 1tt2 chain A Region: 149 - 187 Aligned: 33 Modelled: 39 Confidence: 49.4% Identity: 12% Fold: OB-fold Superfamily: Staphylococcal nuclease Family: Staphylococcal nuclease Phyre2 PDB 3bdl chain A Region: 147 - 187 Aligned: 36 Modelled: 41 Confidence: 48.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn Phyre2 PDB 2ix0 chain A domain 3 Region: 65 - 91 Aligned: 27 Modelled: 27 Confidence: 35.4% Identity: 11% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2ijr chain A domain 1 Region: 17 - 38 Aligned: 22 Modelled: 22 Confidence: 32.7% Identity: 27% Fold: Api92-like Superfamily: Api92-like Family: Api92-like Phyre2 PDB 1sno chain A Region: 149 - 187 Aligned: 33 Modelled: 39 Confidence: 29.7% Identity: 12% Fold: OB-fold Superfamily: Staphylococcal nuclease Family: Staphylococcal nuclease Phyre2 PDB 3etc chain B Region: 149 - 189 Aligned: 34 Modelled: 41 Confidence: 29.6% Identity: 32% PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Phyre2 PDB 1khc chain A Region: 66 - 82 Aligned: 17 Modelled: 17 Confidence: 26.7% Identity: 24% Fold: SH3-like barrel Superfamily: Tudor/PWWP/MBT Family: PWWP domain Phyre2 PDB 2yyj chain A Region: 148 - 180 Aligned: 32 Modelled: 33 Confidence: 24.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylacetate-3-hydroxylase; PDBTitle: crystal structure of the oxygenase component (hpab) of 4-2 hydroxyphenylacetate 3-monooxygenase complexed with fad and 4-3 hydroxyphenylacetate Phyre2 PDB 3pzv chain B Region: 155 - 183 Aligned: 27 Modelled: 29 Confidence: 24.3% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168 Phyre2 PDB 1vlb chain A domain 3 Region: 63 - 85 Aligned: 23 Modelled: 23 Confidence: 23.2% Identity: 22% Fold: alpha/beta-Hammerhead Superfamily: CO dehydrogenase molybdoprotein N-domain-like Family: CO dehydrogenase molybdoprotein N-domain-like Phyre2 PDB 1dgj chain A domain 3 Region: 63 - 85 Aligned: 23 Modelled: 23 Confidence: 22.4% Identity: 30% Fold: alpha/beta-Hammerhead Superfamily: CO dehydrogenase molybdoprotein N-domain-like Family: CO dehydrogenase molybdoprotein N-domain-like Phyre2 PDB 3f8t chain A Region: 177 - 232 Aligned: 56 Modelled: 56 Confidence: 22.3% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:predicted atpase involved in replication control, PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri Phyre2 PDB 3izc chain G Region: 150 - 165 Aligned: 16 Modelled: 16 Confidence: 22.0% Identity: 25% PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 1nbw chain A domain 2 Region: 72 - 170 Aligned: 49 Modelled: 52 Confidence: 21.9% Identity: 27% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ATPase domain of dehydratase reactivase alpha subunit Phyre2 PDB 2l66 chain B Region: 73 - 85 Aligned: 13 Modelled: 13 Confidence: 21.8% Identity: 23% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2dzc chain A Region: 140 - 180 Aligned: 41 Modelled: 41 Confidence: 21.0% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:biotin--[acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from pyrococcus2 horikoshii, mutation r48a Phyre2 PDB 3llr chain A Region: 66 - 82 Aligned: 17 Modelled: 17 Confidence: 20.4% Identity: 35% PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha Phyre2 1 d1ah9a_ 2 c3i4oA_ 3 d1m9sa4 4 d1tt2a_ 5 c3bdlA_ 6 d2ix0a3 7 d2ijra1 8 d1snoa_ 9 c3etcB_ 10 d1khca_ 11 c2yyjA_ 12 c3pzvB_ 13 d1vlba3 14 d1dgja3 15 c3f8tA_ 16 c3izcG_ 17 d1nbwa2 18 c2l66B_ 19 c2dzcA_ 20 c3llrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ah9a_ 61.4 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 c3i4oA_ 57.8 17 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 3 d1m9sa4 51.1 19 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:GW domain 4 d1tt2a_ 49.4 12 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 5 c3bdlA_ 48.0 25 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 6 d2ix0a3 35.4 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 7 d2ijra1 32.7 27 Fold:Api92-like Superfamily:Api92-like Family:Api92-like 8 d1snoa_ 29.7 12 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 9 c3etcB_ 29.6 32 PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 10 d1khca_ 26.7 24 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 11 c2yyjA_ 24.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylacetate-3-hydroxylase; PDBTitle: crystal structure of the oxygenase component (hpab) of 4-2 hydroxyphenylacetate 3-monooxygenase complexed with fad and 4-3 hydroxyphenylacetate 12 c3pzvB_ 24.3 22 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168 13 d1vlba3 23.2 22 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 14 d1dgja3 22.4 30 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 15 c3f8tA_ 22.3 13 PDB header:hydrolase Chain: A: PDB Molecule:predicted atpase involved in replication control, PDBTitle: crystal structure analysis of a full-length mcm homolog2 from methanopyrus kandleri 16 c3izcG_ 22.0 25 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 17 d1nbwa2 21.9 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 18 c2l66B_ 21.8 23 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 19 c2dzcA_ 21.0 15 PDB header:ligase Chain: A: PDB Molecule:biotin--[acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from pyrococcus2 horikoshii, mutation r48a 20 c3llrA_ 20.4 35 PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha 21 d1hr0w_ not modelled 20.2 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 d1qupa2 not modelled 18.8 22 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 23 d1n62b1 not modelled 18.7 13 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 24 d1fvia1 not modelled 18.3 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 25 c2wctC_ not modelled 18.0 25 PDB header:rna-binding protein Chain: C: PDB Molecule:non-structural protein 3; PDBTitle: human sars coronavirus unique domain (triclinic form) 26 d1m9sa2 not modelled 17.0 13 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:GW domain 27 d1rkna_ not modelled 16.3 12 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 28 d2k0bx1 not modelled 15.7 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 29 d1ng2a2 not modelled 13.2 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 30 d1ffvb1 not modelled 12.8 13 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 31 c2wj7D_ not modelled 12.8 14 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin 32 d1kj1a_ not modelled 12.6 27 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 33 c2b9kA_ not modelled 12.3 46 PDB header:antibiotic Chain: A: PDB Molecule:antimicrobial peptide lci; PDBTitle: solution structure of lci, an amp from bacillus subtilis 34 d2essa1 not modelled 12.0 7 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:Acyl-ACP thioesterase-like 35 d1t3qb1 not modelled 12.0 26 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 36 d2hlja1 not modelled 11.9 9 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 37 d2soba_ not modelled 11.7 10 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 38 c2crlA_ not modelled 11.5 7 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 39 d1tdja3 not modelled 11.2 31 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 40 c3r0eD_ not modelled 11.1 15 PDB header:sugar binding protein Chain: D: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 41 c3mezB_ not modelled 10.6 36 PDB header:sugar binding protein Chain: B: PDB Molecule:mannose-specific lectin 3 chain 2; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 42 c2oi3A_ not modelled 10.5 15 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: nmr structure analysis of the hematopoetic cell kinase sh32 domain complexed with an artificial high affinity ligand3 (pd1) 43 d1cc8a_ not modelled 10.3 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 44 d1g2913 not modelled 10.2 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 45 c2ewnA_ not modelled 10.1 12 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 46 c3ipfA_ not modelled 9.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 47 d1bwud_ not modelled 9.5 21 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 48 d1hnga1 not modelled 9.4 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 49 c2wgnB_ not modelled 9.4 25 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp 50 d7a3ha_ not modelled 9.2 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 51 c2kctA_ not modelled 9.1 21 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccme; PDBTitle: solution nmr structure of the ob-fold domain of heme2 chaperone ccme from desulfovibrio vulgaris. northeast3 structural genomics target dvr115g. 52 d1b2pa_ not modelled 9.1 12 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 53 d1vqoq1 not modelled 8.6 7 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 54 c2dpfB_ not modelled 8.6 14 PDB header:plant protein Chain: B: PDB Molecule:curculin; PDBTitle: crystal structure of curculin1 homodimer 55 d1v25a_ not modelled 8.5 12 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 56 c2zkrq_ not modelled 8.4 30 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 57 c4a1dE_ not modelled 8.4 38 PDB header:ribosome Chain: E: PDB Molecule:rpl6; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 58 d1kj1d_ not modelled 8.2 29 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 59 c1s1iQ_ not modelled 8.2 22 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 60 c3r0eC_ not modelled 8.2 36 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 61 c2eayB_ not modelled 8.2 20 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 62 c1w3gA_ not modelled 8.0 16 PDB header:toxin/lectin Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus; PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules. 63 d1jrob1 not modelled 7.9 13 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 64 c3iz5U_ not modelled 7.9 26 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 65 c2cghB_ not modelled 7.8 8 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 66 c4a1aP_ not modelled 7.7 13 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 67 d1npla_ not modelled 7.7 20 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 68 d1kafa_ not modelled 7.7 29 Fold:MotA C-terminal domain-like Superfamily:DNA-binding C-terminal domain of the transcription factor MotA Family:DNA-binding C-terminal domain of the transcription factor MotA 69 d1khda2 not modelled 7.6 19 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 70 c3elqA_ not modelled 7.6 18 PDB header:transferase Chain: A: PDB Molecule:arylsulfate sulfotransferase; PDBTitle: crystal structure of a bacterial arylsulfate2 sulfotransferase 71 d1hnfa1 not modelled 7.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 72 c3m86B_ not modelled 7.4 31 PDB header:protein binding Chain: B: PDB Molecule:amoebiasin-2; PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica 73 d1bwua_ not modelled 7.4 21 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 74 d2joya1 not modelled 7.4 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 75 c2w54F_ not modelled 7.4 13 PDB header:oxidoreductase Chain: F: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde 76 c3izcU_ not modelled 7.4 22 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 77 d1d7qa_ not modelled 7.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 d2elca2 not modelled 7.3 19 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 79 c2imzA_ not modelled 7.2 7 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 80 c3ij3A_ not modelled 7.1 25 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii 81 d1jpca_ not modelled 7.1 20 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 82 c2oqkA_ not modelled 7.1 19 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 83 c2dbkA_ not modelled 7.0 12 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 84 d1oxxk1 not modelled 7.0 22 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 85 c2klrA_ not modelled 6.9 14 PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin b chain; PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers 86 d1l4zb_ not modelled 6.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase 87 c2k5hA_ not modelled 6.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 88 d2zjrm1 not modelled 6.8 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 89 c1u8vA_ not modelled 6.7 20 PDB header:lyase, isomerase Chain: A: PDB Molecule:gamma-aminobutyrate metabolism PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin 90 d2exda1 not modelled 6.7 20 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 91 c1qupA_ not modelled 6.7 22 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 92 c3iuwA_ not modelled 6.7 36 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 93 c3iz5G_ not modelled 6.6 31 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 d1jt8a_ not modelled 6.5 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 95 c3h8gC_ not modelled 6.4 25 PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida 96 c2zs6B_ not modelled 6.4 22 PDB header:toxin Chain: B: PDB Molecule:hemagglutinin components ha3; PDBTitle: ha3 subcomponent of botulinum type c progenitor toxin 97 c2e4mC_ not modelled 6.3 44 PDB header:toxin Chain: C: PDB Molecule:ha-17; PDBTitle: crystal structure of hemagglutinin subcomponent complex (ha-2 33/ha-17) from clostridium botulinum serotype d strain 4947 98 d1v97a3 not modelled 6.3 13 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 99 d3b9jc1 not modelled 6.1 13 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0