Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	R	I	E	H	Y	H	D	W	L	R	D	A	H	A	M	E	K	Q	A	E	S	M	L	E	S	M	A	S	R	I	D	N	Y	P	E	L	R	A	R	I	E	Q	H	L	S	E	T	K	N	Q	I	V	Q	L	E	T	I	L
Secondary structure
SS confidence
Disorder		?	?																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	R	N	D	I	S	R	S	V	I	K	D	S	M	S	K	M	A	A	L	G	Q	S	I	G	G	I	F	P	S	D	E	I	V	K	G	S	I	S	G	Y	V	F	E	Q	F	E	I	A	C	Y	T	S	L	L	A	A	A	K	N
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?															?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Sequence		A	G	D	T	A	S	I	P	T	I	E	A	I	L	N	E	E	K	Q	M	A	D	W	L	I	Q	N	I	P	Q	T	T	E	K	F	L	I	R	S	E	T	D	G	V	E	A	K	K
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3hiu chain B Region: 2 - 160 Aligned: 143 Modelled: 141 Confidence: 100.0% Identity: 38% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of protein (xcc3681) from xanthomonas2 campestris pv. campestris str. atcc 33913 Phyre2 PDB 2gyq chain A domain 1 Region: 2 - 148 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 23% Fold: Ferritin-like Superfamily: Ferritin-like Family: YciF-like Phyre2 PDB 2gs4 chain A domain 1 Region: 3 - 152 Aligned: 149 Modelled: 150 Confidence: 100.0% Identity: 19% Fold: Ferritin-like Superfamily: Ferritin-like Family: YciF-like Phyre2 PDB 3ogh chain B Region: 2 - 160 Aligned: 147 Modelled: 159 Confidence: 100.0% Identity: 94% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins Phyre2 PDB 3r2r chain A Region: 1 - 153 Aligned: 140 Modelled: 140 Confidence: 99.2% Identity: 16% PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) Phyre2 PDB 2htn chain A domain 1 Region: 1 - 153 Aligned: 141 Modelled: 153 Confidence: 99.2% Identity: 14% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2qqy chain A Region: 2 - 149 Aligned: 135 Modelled: 135 Confidence: 99.1% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames Phyre2 PDB 3gvy chain C Region: 1 - 153 Aligned: 141 Modelled: 153 Confidence: 99.1% Identity: 12% PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides Phyre2 PDB 3bkn chain B Region: 1 - 153 Aligned: 141 Modelled: 153 Confidence: 99.1% Identity: 12% PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin Phyre2 PDB 2vzb chain A Region: 4 - 153 Aligned: 146 Modelled: 150 Confidence: 99.1% Identity: 15% PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis Phyre2 PDB 1nf4 chain A Region: 2 - 166 Aligned: 153 Modelled: 153 Confidence: 99.1% Identity: 20% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2fkz chain A domain 1 Region: 1 - 153 Aligned: 139 Modelled: 139 Confidence: 99.0% Identity: 16% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 3fvb chain B Region: 1 - 159 Aligned: 147 Modelled: 147 Confidence: 99.0% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis Phyre2 PDB 1jgc chain A Region: 1 - 153 Aligned: 141 Modelled: 141 Confidence: 98.9% Identity: 13% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 1j30 chain A Region: 7 - 151 Aligned: 129 Modelled: 129 Confidence: 98.9% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 1lko chain A domain 1 Region: 7 - 153 Aligned: 134 Modelled: 134 Confidence: 98.9% Identity: 13% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 1yv1 chain A domain 1 Region: 8 - 151 Aligned: 131 Modelled: 131 Confidence: 98.8% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 3qhb chain A Region: 11 - 152 Aligned: 141 Modelled: 142 Confidence: 98.8% Identity: 16% PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa Phyre2 PDB 2clb chain P Region: 2 - 148 Aligned: 145 Modelled: 147 Confidence: 98.6% Identity: 12% PDB header:metal binding protein Chain: P: PDB Molecule:dps-like protein; PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly Phyre2 PDB 1yuz chain A domain 1 Region: 8 - 143 Aligned: 121 Modelled: 121 Confidence: 98.6% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 1 c3hiuB_ 2 d2gyqa1 3 d2gs4a1 4 c3oghB_ 5 c3r2rA_ 6 d2htna1 7 c2qqyA_ 8 c3gvyC_ 9 c3bknB_ 10 c2vzbA_ 11 d1nf4a_ 12 d2fkza1 13 c3fvbB_ 14 d1jgca_ 15 d1j30a_ 16 d1lkoa1 17 d1yv1a1 18 c3qhbA_ 19 c2clbP_ 20 d1yuza1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hiuB_ 100.0 38 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of protein (xcc3681) from xanthomonas2 campestris pv. campestris str. atcc 33913 2 d2gyqa1 100.0 23 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 3 d2gs4a1 100.0 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:YciF-like 4 c3oghB_ 100.0 94 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 5 c3r2rA_ 99.2 16 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 6 d2htna1 99.2 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 7 c2qqyA_ 99.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 8 c3gvyC_ 99.1 12 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 9 c3bknB_ 99.1 12 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 10 c2vzbA_ 99.1 15 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 11 d1nf4a_ 99.1 20 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 12 d2fkza1 99.0 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 13 c3fvbB_ 99.0 14 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 14 d1jgca_ 98.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 15 d1j30a_ 98.9 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 16 d1lkoa1 98.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 17 d1yv1a1 98.8 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 18 c3qhbA_ 98.8 16 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 19 c2clbP_ 98.6 12 PDB header:metal binding protein Chain: P: PDB Molecule:dps-like protein; PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly 20 d1yuza1 98.6 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 21 c1dvbA_ not modelled 98.6 15 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 22 c3e6sD_ not modelled 98.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:ferritin; PDBTitle: crystal structure of ferritin soaked with iron from pseudo-2 nitzschia multiseries 23 d2oh3a1 not modelled 98.5 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 24 d1nnqa1 not modelled 98.4 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 25 c1yuzB_ not modelled 98.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 26 d2fzfa1 not modelled 98.4 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 27 d1vlga_ not modelled 98.3 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 28 c2hr5B_ not modelled 98.3 19 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 29 d1jiga_ not modelled 98.3 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 30 d1o9ra_ not modelled 98.2 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 31 c2c41K_ not modelled 98.1 11 PDB header:iron-binding/oxidation protein Chain: K: PDB Molecule:dps family dna-binding stress response protein; PDBTitle: x-ray structure of dps from thermosynechococcus elongatus 32 d1ji5a_ not modelled 98.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 33 d1tjoa_ not modelled 98.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 34 c3iq1A_ not modelled 98.0 14 PDB header:metal transport Chain: A: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins 35 d1krqa_ not modelled 98.0 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 36 c2d5kC_ not modelled 98.0 11 PDB header:metal binding protein Chain: C: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps from staphylococcus aureus 37 c2vxxB_ not modelled 98.0 11 PDB header:dna-binding protein Chain: B: PDB Molecule:starvation induced dna binding protein; PDBTitle: x-ray structure of dpsa from thermosynechococcus elongatus 38 c3qz3A_ not modelled 98.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ferritin; PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961 39 d1n1qa_ not modelled 97.9 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 40 c2c6rA_ not modelled 97.8 6 PDB header:dna-binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans 41 c3bvkC_ not modelled 97.8 14 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 42 c2chpC_ not modelled 97.8 10 PDB header:dna-binding protein Chain: C: PDB Molecule:metalloregulation dna-binding stress protein; PDBTitle: crystal structure of the dodecameric ferritin mrga from2 b.subtilis 168 43 c3qd8M_ not modelled 97.8 15 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 44 d1euma_ not modelled 97.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 45 c3kwoA_ not modelled 97.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative bacterioferritin; PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni 46 c2jd8C_ not modelled 97.7 14 PDB header:metal transport Chain: C: PDB Molecule:ferritin homolog; PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus 47 d1rcda_ not modelled 97.7 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 48 d1ji4a_ not modelled 97.7 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 49 d1lb3a_ not modelled 97.7 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 50 d2ceia1 not modelled 97.6 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 d1dpsa_ not modelled 97.6 7 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 52 d1mfra_ not modelled 97.6 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 53 d2fjca1 not modelled 97.5 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 54 d1r03a_ not modelled 97.5 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 55 d2bk6a1 not modelled 97.5 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 56 d1vela_ not modelled 97.5 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 57 d1vjxa_ not modelled 97.3 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 58 d1s3qa1 not modelled 97.3 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 59 c1u7mB_ not modelled 97.2 30 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 60 d2yw6a1 not modelled 97.0 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 61 c2ib0A_ not modelled 96.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical alanine rich protein; PDBTitle: crystal structure of a conserved hypothetical protein, rv2844, from2 mycobacterium tuberculosis 62 d2ib0a1 not modelled 96.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Rv2844-like 63 c2xgwA_ not modelled 96.9 15 PDB header:metal binding protein Chain: A: PDB Molecule:peroxide resistance protein; PDBTitle: zinc-bound crystal structure of streptococcus pyogenes dpr 64 d2za7a1 not modelled 96.9 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 65 d1umna_ not modelled 96.9 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 66 c2f7nA_ not modelled 96.9 10 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 67 c2wlaA_ not modelled 96.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:dps-like peroxide resistance protein; PDBTitle: streptococcus pyogenes dpr 68 c2z90D_ not modelled 96.5 8 PDB header:dna binding protein Chain: D: PDB Molecule:starvation-inducible dna-binding protein or fine PDBTitle: crystal structure of the second dps from mycobacterium2 smegmatis 69 c3fseB_ not modelled 96.0 23 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 70 c2rbdB_ not modelled 95.9 10 PDB header:structural protein Chain: B: PDB Molecule:bh2358 protein; PDBTitle: crystal structure of a putative spore coat protein (bh2358) from2 bacillus halodurans c-125 at 1.54 a resolution 71 c2yjkF_ not modelled 95.6 7 PDB header:metal-binding protein Chain: F: PDB Molecule:afp; PDBTitle: structure of dps from microbacterium arborescens in the2 high iron form 72 c1lt1G_ not modelled 95.2 28 PDB header:de novo protein Chain: G: PDB Molecule:l13g-df1; PDBTitle: sliding helix induced change of coordination geometry in a2 model di-mn(ii) protein 73 c2pybC_ not modelled 95.1 8 PDB header:metal transport Chain: C: PDB Molecule:neutrophil activating protein; PDBTitle: napa protein from borrelia burgdorferi 74 c3a9qR_ not modelled 95.0 15 PDB header:oxidoreductase Chain: R: PDB Molecule: PDBTitle: crystal structure analysis of e173a variant of the soybean2 ferritin sfer4 75 c3q4nA_ not modelled 94.0 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 76 c3bt5A_ not modelled 93.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf305; PDBTitle: crystal structure of duf305 fragment from deinococcus2 radiodurans 77 c2hz8A_ not modelled 92.1 18 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 78 d1z6om1 not modelled 90.8 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 79 c2qf9B_ not modelled 90.5 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative secreted protein; PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor 80 c3ddeB_ not modelled 89.2 11 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 81 d1zs3a1 not modelled 88.7 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 82 d1zpya1 not modelled 87.6 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:half-ferritin 83 d1zuja1 not modelled 81.8 6 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 84 d2etda1 not modelled 75.8 22 Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like 85 d1q08a_ not modelled 75.0 18 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 86 d1bg7a_ not modelled 73.1 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 87 d1rcwa_ not modelled 72.3 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 88 d1jkva_ not modelled 67.4 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 89 d2cwla1 not modelled 59.8 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 90 d1q06a_ not modelled 59.2 8 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 91 c2lchA_ not modelled 51.0 10 PDB header:de novo protein Chain: A: PDB Molecule:protein or38; PDBTitle: solution nmr structure of a protein with a redesigned hydrophobic2 core, northeast structural genomics consortium target or38 92 c3oqlB_ not modelled 42.6 9 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 93 d1tqga_ not modelled 32.1 11 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 94 d1i5na_ not modelled 32.0 10 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 95 d1z72a1 not modelled 31.5 10 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 96 c1o06A_ not modelled 29.7 35 PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vps27; PDBTitle: crystal structure of the vps27p ubiquitin interacting motif (uim) 97 d1udda_ not modelled 26.6 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 98 c3gp4B_ not modelled 25.9 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, merr family; PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes 99 c3oqlA_ not modelled 25.5 9 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 100 c2xykB_ not modelled 22.9 10 PDB header:oxygen storage/transport Chain: B: PDB Molecule:2-on-2 hemoglobin; PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0