Secondary structure and disorder prediction

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10

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20

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30

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40

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50

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60

Sequence

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E

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I

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N

C

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T

C

G

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V

W

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A

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G

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D

D

W

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Secondary structure

SS confidence

Disorder

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Disorder confidence

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Sequence

E

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lv3 chain A Region: 1 - 65 Aligned: 65 Modelled: 65 Confidence: 100.0% Identity: 100% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Hypothetical zinc finger protein YacG Phyre2 PDB 2cu8 chain A domain 1 Region: 5 - 20 Aligned: 16 Modelled: 16 Confidence: 68.0% Identity: 44% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 2das chain A domain 1 Region: 2 - 32 Aligned: 31 Modelled: 31 Confidence: 57.5% Identity: 26% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: TRASH domain Phyre2 PDB 2d8q chain A domain 1 Region: 3 - 36 Aligned: 24 Modelled: 34 Confidence: 55.1% Identity: 25% Fold: HIT/MYND zinc finger-like Superfamily: HIT/MYND zinc finger-like Family: MYND zinc finger Phyre2 PDB 2yqq chain A Region: 2 - 35 Aligned: 34 Modelled: 34 Confidence: 54.7% Identity: 24% PDB header:protein binding Chain: A: PDB Molecule:zinc finger hit domain-containing protein 3; PDBTitle: solution structure of the zf-hit domain in zinc finger hit2 domain-containing protein 3 (trip-3) Phyre2 PDB 3n71 chain A Region: 7 - 37 Aligned: 21 Modelled: 31 Confidence: 49.9% Identity: 24% PDB header:transcription Chain: A: PDB Molecule:histone lysine methyltransferase smyd1; PDBTitle: crystal structure of cardiac specific histone methyltransferase smyd1 Phyre2 PDB 1yuz chain B Region: 8 - 27 Aligned: 15 Modelled: 20 Confidence: 49.8% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 2das chain A Region: 2 - 32 Aligned: 31 Modelled: 31 Confidence: 48.9% Identity: 26% PDB header:metal transport Chain: A: PDB Molecule:zinc finger mym-type protein 5; PDBTitle: solution structure of trash domain of zinc finger mym-type2 protein 5 Phyre2 PDB 3mek chain A Region: 7 - 36 Aligned: 20 Modelled: 29 Confidence: 47.8% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 3; PDBTitle: crystal structure of human histone-lysine n-2 methyltransferase smyd3 in complex with s-adenosyl-l-3 methionine Phyre2 PDB 2jw6 chain A Region: 3 - 36 Aligned: 24 Modelled: 34 Confidence: 45.1% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:deformed epidermal autoregulatory factor 1 homolog; PDBTitle: solution structure of the deaf1 mynd domain Phyre2 PDB 2jrp chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 43.3% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 Phyre2 PDB 2k5c chain A Region: 8 - 18 Aligned: 11 Modelled: 11 Confidence: 41.5% Identity: 45% PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 Phyre2 PDB 2dj8 chain A Region: 3 - 36 Aligned: 24 Modelled: 34 Confidence: 40.4% Identity: 29% PDB header:metal binding protein Chain: A: PDB Molecule:protein cbfa2t1; PDBTitle: solution structure of zf-mynd domain of protein cbfa2ti2 (protein mtg8) Phyre2 PDB 2jw6 chain A domain 1 Region: 3 - 36 Aligned: 24 Modelled: 34 Confidence: 39.5% Identity: 33% Fold: HIT/MYND zinc finger-like Superfamily: HIT/MYND zinc finger-like Family: MYND zinc finger Phyre2 PDB 2odd chain A Region: 3 - 36 Aligned: 24 Modelled: 34 Confidence: 38.9% Identity: 29% PDB header:metal binding protein Chain: A: PDB Molecule:protein cbfa2t1; PDBTitle: solution structure of the mynd domain from aml1-eto2 complexed with smrt, a corepressor Phyre2 PDB 1iml chain A domain 1 Region: 8 - 20 Aligned: 13 Modelled: 13 Confidence: 38.7% Identity: 46% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 2jne chain A domain 1 Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 35.6% Identity: 17% Fold: Rubredoxin-like Superfamily: YfgJ-like Family: YfgJ-like Phyre2 PDB 2jne chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 35.6% Identity: 17% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. Phyre2 PDB 2dlq chain A domain 4 Region: 7 - 16 Aligned: 10 Modelled: 10 Confidence: 35.5% Identity: 60% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2jr6 chain A Region: 1 - 22 Aligned: 22 Modelled: 22 Confidence: 35.1% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 Phyre2 1 d1lv3a_ 2 d2cu8a1 3 d2dasa1 4 d2d8qa1 5 c2yqqA_ 6 c3n71A_ 7 c1yuzB_ 8 c2dasA_ 9 c3mekA_ 10 c2jw6A_ 11 c2jrpA_ 12 c2k5cA_ 13 c2dj8A_ 14 d2jw6a1 15 c2oddA_ 16 d1imla1 17 d2jnea1 18 c2jneA_ 19 d2dlqa4 20 c2jr6A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lv3a_ 100.0 100 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 2 d2cu8a1 68.0 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 3 d2dasa1 57.5 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:TRASH domain 4 d2d8qa1 55.1 25 Fold:HIT/MYND zinc finger-like Superfamily:HIT/MYND zinc finger-like Family:MYND zinc finger 5 c2yqqA_ 54.7 24 PDB header:protein binding Chain: A: PDB Molecule:zinc finger hit domain-containing protein 3; PDBTitle: solution structure of the zf-hit domain in zinc finger hit2 domain-containing protein 3 (trip-3) 6 c3n71A_ 49.9 24 PDB header:transcription Chain: A: PDB Molecule:histone lysine methyltransferase smyd1; PDBTitle: crystal structure of cardiac specific histone methyltransferase smyd1 7 c1yuzB_ 49.8 27 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 8 c2dasA_ 48.9 26 PDB header:metal transport Chain: A: PDB Molecule:zinc finger mym-type protein 5; PDBTitle: solution structure of trash domain of zinc finger mym-type2 protein 5 9 c3mekA_ 47.8 30 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 3; PDBTitle: crystal structure of human histone-lysine n-2 methyltransferase smyd3 in complex with s-adenosyl-l-3 methionine 10 c2jw6A_ 45.1 33 PDB header:transcription Chain: A: PDB Molecule:deformed epidermal autoregulatory factor 1 homolog; PDBTitle: solution structure of the deaf1 mynd domain 11 c2jrpA_ 43.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 12 c2k5cA_ 41.5 45 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 13 c2dj8A_ 40.4 29 PDB header:metal binding protein Chain: A: PDB Molecule:protein cbfa2t1; PDBTitle: solution structure of zf-mynd domain of protein cbfa2ti2 (protein mtg8) 14 d2jw6a1 39.5 33 Fold:HIT/MYND zinc finger-like Superfamily:HIT/MYND zinc finger-like Family:MYND zinc finger 15 c2oddA_ 38.9 29 PDB header:metal binding protein Chain: A: PDB Molecule:protein cbfa2t1; PDBTitle: solution structure of the mynd domain from aml1-eto2 complexed with smrt, a corepressor 16 d1imla1 38.7 46 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 17 d2jnea1 35.6 17 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 18 c2jneA_ 35.6 17 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 19 d2dlqa4 35.5 60 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 20 c2jr6A_ 35.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 21 d2dj8a1 not modelled 33.8 28 Fold:HIT/MYND zinc finger-like Superfamily:HIT/MYND zinc finger-like Family:MYND zinc finger 22 c2js4A_ not modelled 32.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 23 c2danA_ not modelled 32.1 25 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger mynd domain containing protein 10; PDBTitle: the solution structure of the mynd domain (leu384-cys430)2 of human zinc finger mynd domain containing protein 10 24 d2dana1 not modelled 31.9 25 Fold:HIT/MYND zinc finger-like Superfamily:HIT/MYND zinc finger-like Family:MYND zinc finger 25 d1fbva4 not modelled 31.5 30 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 26 d2jnya1 not modelled 31.1 13 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 27 c2ecgA_ not modelled 30.0 28 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens 28 c2ectA_ not modelled 29.9 25 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 126; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126 29 c3qwvA_ not modelled 28.8 35 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 2; PDBTitle: crystal structure of histone lysine methyltransferase smyd2 in complex2 with the cofactor product adohcy 30 c3u50C_ not modelled 28.7 32 PDB header:dna binding protein Chain: C: PDB Molecule:telomerase-associated protein 82; PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c 31 c3nw0A_ not modelled 28.4 19 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1 PDBTitle: crystal structure of mageg1 and nse1 complex 32 c2l8eA_ not modelled 27.4 26 PDB header:dna binding protein Chain: A: PDB Molecule:polyhomeotic-like protein 1; PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1) 33 c2hl7A_ not modelled 26.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 34 d2pw4a1 not modelled 26.2 26 Fold:Jann2411-like Superfamily:Jann2411-like Family:Jann2411-like 35 d1p91a_ not modelled 25.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 36 d1imla2 not modelled 24.0 35 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 d2hf1a1 not modelled 23.7 24 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 38 c3oxgA_ not modelled 23.5 30 PDB header:transferase Chain: A: PDB Molecule:set and mynd domain-containing protein 3; PDBTitle: human lysine methyltransferase smyd3 in complex with adohcy (form iii) 39 d1bora_ not modelled 23.5 27 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 40 d2pk7a1 not modelled 23.3 18 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 41 d1yuza2 not modelled 22.9 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 42 c2kw0A_ not modelled 22.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 43 d1ctla1 not modelled 22.3 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 44 c2pptA_ not modelled 21.2 36 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 45 d1ibia1 not modelled 19.9 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 46 c3iz6X_ not modelled 19.8 21 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 47 c2hr5B_ not modelled 19.3 36 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 48 c3eb6A_ not modelled 18.8 39 PDB header:apoptosis, ligase Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 3; PDBTitle: structure of the ciap2 ring domain bound to ubch5b 49 c2w0tA_ not modelled 18.6 37 PDB header:transcription Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein; PDBTitle: solution structure of the fcs zinc finger domain of human2 lmbl2 50 c2ct2A_ not modelled 18.4 26 PDB header:ligase Chain: A: PDB Molecule:tripartite motif protein 32; PDBTitle: solution structure of the ring domain of the tripartite2 motif protein 32 51 d1ur6b_ not modelled 18.1 25 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 52 c2kpiA_ not modelled 17.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 53 c1dvbA_ not modelled 17.6 27 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 54 d1pfta_ not modelled 17.4 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 55 d1g25a_ not modelled 16.9 47 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 56 c2ecwA_ not modelled 16.7 26 PDB header:apoptosis Chain: A: PDB Molecule:tripartite motif-containing protein 30; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30 57 c3mhsC_ not modelled 16.5 29 PDB header:hydrolase/transcription regulator/protei Chain: C: PDB Molecule:saga-associated factor 11; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 58 c3izbX_ not modelled 15.9 31 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 59 d1v87a_ not modelled 15.8 21 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 60 c3floD_ not modelled 15.7 31 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 61 c2djbA_ not modelled 15.6 40 PDB header:gene regulation Chain: A: PDB Molecule:polycomb group ring finger protein 6; PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6 62 c2csyA_ not modelled 15.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger protein 183-like 1; PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1 63 c2gb5B_ not modelled 15.1 24 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 64 c3t6pA_ not modelled 15.1 30 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization 65 c2yslA_ not modelled 14.9 21 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif-containing protein 31; PDBTitle: solution structure of the ring domain (1-66) from2 tripartite motif-containing protein 31 66 c2ea5A_ not modelled 14.7 40 PDB header:cell cycle Chain: A: PDB Molecule:cell growth regulator with ring finger domain PDBTitle: solution structure of the ring domain of the human cell2 growth regulator with ring finger domain 1 protein 67 c3i2dA_ not modelled 14.7 20 PDB header:ligase Chain: A: PDB Molecule:e3 sumo-protein ligase siz1; PDBTitle: crystal structure of s. cerevisiae sumo e3 ligase siz1 68 d2apob1 not modelled 14.6 30 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 69 d1twfj_ not modelled 14.6 41 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 70 c2eclA_ not modelled 14.4 36 PDB header:metal binding protein Chain: A: PDB Molecule:ring-box protein 2; PDBTitle: solution structure of the ring domain of the human ring-box2 protein 2 71 d1nnqa2 not modelled 14.4 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 72 c2y0fD_ not modelled 14.2 29 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 73 d1dgsa1 not modelled 14.2 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 74 d2ey4e1 not modelled 13.9 30 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 75 c2aklA_ not modelled 13.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 76 c1z6uA_ not modelled 13.7 33 PDB header:ligase Chain: A: PDB Molecule:np95-like ring finger protein isoform b; PDBTitle: np95-like ring finger protein isoform b [homo sapiens] 77 c2yurA_ not modelled 13.5 36 PDB header:protein binding Chain: A: PDB Molecule:retinoblastoma-binding protein 6; PDBTitle: solution structure of the ring finger of human2 retinoblastoma-binding protein 6 78 d2baya1 not modelled 13.5 26 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 79 d1lkoa2 not modelled 13.4 38 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 80 c2vjfB_ not modelled 13.4 44 PDB header:ligase Chain: B: PDB Molecule:mdm4 protein; PDBTitle: crystal structure of the mdm2-mdmx ring domain heterodimer 81 d2j0151 not modelled 13.4 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 82 d2qam01 not modelled 13.4 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 83 c2yhoE_ not modelled 13.2 40 PDB header:ligase Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip; PDBTitle: the idol-ube2d complex mediates sterol-dependent degradation of the2 ldl receptor 84 d1b8ta3 not modelled 12.7 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 85 d1ibia2 not modelled 12.7 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c2emwA_ not modelled 12.6 17 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 268; PDBTitle: solution structure of the c2h2 type zinc finger (region 301-2 331) of human zinc finger protein 268 87 c3b08H_ not modelled 12.6 29 PDB header:signaling protein/metal binding protein Chain: H: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1; PDBTitle: crystal structure of the mouse hoil1-l-nzf in complex with linear di-2 ubiquitin 88 d1e7la2 not modelled 12.5 25 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Recombination endonuclease VII, N-terminal domain 89 c2ecyA_ not modelled 12.4 23 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 90 c2hdpB_ not modelled 12.3 22 PDB header:ligase Chain: B: PDB Molecule:ubiquitin-protein ligase e3 mdm2; PDBTitle: solution structure of hdm2 ring finger domain 91 d1e4ua_ not modelled 12.2 21 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 92 c3fl2A_ not modelled 12.2 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1 93 c2xeuA_ not modelled 12.1 33 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain 94 d1jm7a_ not modelled 12.0 15 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 95 d1qxfa_ not modelled 11.7 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 96 d1qcva_ not modelled 11.7 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 97 c2ep4A_ not modelled 11.5 40 PDB header:protein binding Chain: A: PDB Molecule:ring finger protein 24; PDBTitle: solution structure of ring finger from human ring finger2 protein 24 98 c2d8tA_ not modelled 11.4 22 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 146; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146 99 d1x6ma_ not modelled 11.4 26 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0