Email l.a.kelley@imperial.ac.uk Description P75976 Date Thu Jan 5 12:16:47 GMT 2012 Unique Job ID 2ede2d7bbe41c231

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1rzsa_ 89.1 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 2 d1fipa_ 88.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 3 c3bd1B_ 87.8 20 PDB header:transcription Chain: B: PDB Molecule:cro protein; PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1 4 d1etxa_ 86.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 5 c3e7lD_ 84.3 6 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 6 d1g2ha_ 83.4 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 7 d1etob_ 83.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 8 c3trbA_ 82.8 17 PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii 9 d1umqa_ 82.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 10 c1umqA_ 82.8 13 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 11 c2fjrB_ 82.2 21 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 12 d1ntca_ 81.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 13 c3cecA_ 80.3 17 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 14 d2ou3a1 74.8 21 Fold:TerB-like Superfamily:TerB-like Family:COG3793-like 15 c3onqB_ 70.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:regulator of polyketide synthase expression; PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis 16 c3omtA_ 66.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 17 d1vz0a1 61.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 18 c2jxuA_ 58.9 22 PDB header:unknown function Chain: A: PDB Molecule:terb; PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae 19 c3mn2B_ 58.3 14 PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 20 c3bdnB_ 57.7 12 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 21 d1utxa_ not modelled 57.4 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 22 c3bs3A_ not modelled 56.8 10 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 23 c3mklB_ not modelled 55.3 22 PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 24 d2cg4a1 not modelled 54.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 25 d2icta1 not modelled 54.8 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 26 d1ctda_ not modelled 54.4 24 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 27 d2a61a1 54.0 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 28 c3mkyP_ not modelled 53.5 7 PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form 29 c3eusB_ not modelled 51.8 15 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 30 d2cfxa1 not modelled 51.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 31 d2cyya1 not modelled 50.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 32 c3lisB_ not modelled 50.4 12 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 33 c1nh2D_ not modelled 49.0 12 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 34 c3op9A_ not modelled 47.7 13 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 35 c2l4aA_ not modelled 47.6 9 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 36 d1i1ga1 not modelled 45.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 37 c3f6wE_ not modelled 44.3 15 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 38 d2p12a1 not modelled 44.1 12 Fold:FomD barrel-like Superfamily:FomD-like Family:FomD-like 39 d1y9qa1 not modelled 43.5 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 40 c2o38A_ not modelled 43.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 41 d2o38a1 not modelled 43.5 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 42 c2kpjA_ not modelled 43.2 18 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 43 c3mkzU_ not modelled 43.1 6 PDB header:dna-binding protein/dna Chain: U: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-272)-18mer complex, p21 form 44 c1vkoA_ not modelled 42.2 21 PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: crystal structure of inositol-3-phosphate synthase (ce21227) from2 caenorhabditis elegans at 2.30 a resolution 45 c3b7hA_ not modelled 40.8 7 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 46 c2dbbA_ not modelled 40.4 24 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 47 c3lsgD_ not modelled 39.8 9 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 48 d1rp3a1 not modelled 39.0 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 49 c2ebyA_ not modelled 38.9 16 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli 50 c3f52A_ not modelled 38.4 20 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 51 d1e6yb1 not modelled 35.9 27 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 52 c3oioA_ not modelled 35.9 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum 53 c3k2zA_ not modelled 35.5 18 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 54 c1r71B_ not modelled 35.2 6 PDB header:transcription/dna Chain: B: PDB Molecule:transcriptional repressor protein korb; PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna 55 d1ttya_ not modelled 35.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 56 c2e1cA_ not modelled 34.3 15 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 57 c3exmA_ not modelled 33.4 11 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 58 d2r1jl1 not modelled 32.5 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 59 d3ygsp_ not modelled 32.4 13 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 60 c2p6tH_ not modelled 30.8 12 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 61 c2q9lA_ not modelled 30.0 21 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 62 c2vbzA_ not modelled 28.8 24 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 63 d1e6vb1 not modelled 28.3 22 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 64 d1llib_ not modelled 27.3 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 65 d2b5aa1 not modelled 26.5 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 66 d2f2ea1 not modelled 26.5 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 67 d1z0xa1 not modelled 26.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 68 d1ui5a1 not modelled 26.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 69 d2vcha1 not modelled 25.9 6 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 70 d1r71a_ not modelled 25.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 71 c3hugJ_ not modelled 25.7 10 PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 72 c3kxaD_ not modelled 25.5 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 73 d1or7a1 not modelled 25.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 74 d2jn6a1 not modelled 25.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 75 c3clcC_ not modelled 25.0 4 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 76 c3bhqB_ not modelled 24.8 10 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution 77 c1nvpD_ not modelled 24.8 9 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex 78 d1adra_ not modelled 24.6 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 79 c3k0lA_ not modelled 24.6 15 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 80 c3mlfC_ not modelled 24.3 12 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 81 d1kl7a_ not modelled 23.8 16 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 82 c1e6yE_ not modelled 23.7 29 PDB header:oxidoreductase Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase from methanosarcina barkeri 83 d1nh2d1 not modelled 23.7 12 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 84 d1lmb3_ not modelled 23.6 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 85 c2cfxD_ not modelled 23.6 9 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 86 c2k9sA_ not modelled 23.4 10 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 87 c2ia0A_ not modelled 23.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 88 c2gqqB_ not modelled 22.9 9 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 89 c1i1gA_ not modelled 22.8 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 90 c2p8tA_ not modelled 22.3 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph0730; PDBTitle: hypothetical protein ph0730 from pyrococcus horikoshii ot3 91 d2h5na1 not modelled 22.2 26 Fold:TerB-like Superfamily:TerB-like Family:PG1108-like 92 c3mzyA_ not modelled 22.2 25 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 93 d1in4a1 not modelled 22.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 94 c3oouA_ not modelled 22.1 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua 95 d1sq8a_ not modelled 22.0 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 96 c2nz7A_ not modelled 21.9 8 PDB header:apoptosis Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4; PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1 97 d1b0na2 not modelled 21.8 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 98 c1bl0A_ not modelled 21.7 6 PDB header:transcription/dna Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein); PDBTitle: multiple antibiotic resistance protein (mara)/dna complex 99 d1r69a_ not modelled 21.7 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 100 c3katA_ not modelled 21.6 7 PDB header:apoptosis Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 1; PDBTitle: crystal structure of the card domain of the human nlrp12 protein, northeast structural genomics consortium target3 hr3486e 101 c3b6aC_ not modelled 21.5 15 PDB header:transcription Chain: C: PDB Molecule:actr protein; PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin 102 d2fq4a1 not modelled 21.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 103 c2b1wA_ not modelled 20.9 8 PDB header:apoptosis Chain: A: PDB Molecule:caspase recruitment domain protein 4; PDBTitle: solution structure of the nod1 caspase activating and recruitment2 domain 104 d1uxca_ not modelled 20.3 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 105 c1zljE_ not modelled 20.3 20 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 106 c4a5mH_ not modelled 20.2 19 PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form 107 d1ixrc1 not modelled 20.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 108 c3t76A_ not modelled 20.1 8 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii