Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	H	L	R	N	I	F	N	L	G	I	K	E	L	R	S	L	L	G	D	K	A	M	L	T	L	I	V	F	S	F	T	V	S	V	Y	S	S	A	T	V	T	P	G	S	L	N	L	A	P	I	A	I	A	D	M	D	Q	S
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	L	S	N	R	I	V	N	S	F	Y	R	P	W	F	L	P	P	E	M	I	T	A	D	E	M	D	A	G	L	D	A	G	R	Y	T	F	A	I	N	I	P	P	N	F	Q	R	D	V	L	A	G	R	Q	P	D	I	Q	V	N
Secondary structure
SS confidence
Disorder																																																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	D	A	T	R	M	S	Q	A	F	T	G	N	G	Y	I	Q	N	I	I	N	G	E	V	N	S	F	V	A	R	Y	R	D	N	S	E	P	L	V	S	L	E	T	R	M	R	F	N	P	N	L	D	P	A	W	F	G	G	V	M
Secondary structure
SS confidence
Disorder				?	?																												?	?	?	?	?	?	?		?	?	?	?		?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	I	I	N	N	I	T	M	L	A	I	V	L	T	G	S	A	L	I	R	E	R	E	H	G	T	V	E	H	L	L	V	M	P	I	T	P	F	E	I	M	M	A	K	I	W	S	M	G	L	V	V	L	V	V	S	G	L	S	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	L	M	V	K	G	V	L	G	V	P	I	E	G	S	I	P	L	F	M	L	G	V	A	L	S	L	F	A	T	T	S	I	G	I	F	M	G	T	I	A	R	S	M	P	Q	L	G	L	L	V	I	L	V	L	L	P	L	Q	M
Secondary structure
SS confidence
Disorder																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	S	G	G	S	T	P	R	E	S	M	P	Q	M	V	Q	D	I	M	L	T	M	P	T	T	H	F	V	S	L	A	Q	A	I	L	Y	R	G	A	G	F	E	I	V	W	P	Q	F	L	T	L	M	A	I	G	G	A	F	F	T
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence		I	A	L	L	R	F	R	K	T	I	G	T	M	A
Secondary structure
SS confidence
Disorder											?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cni chain A Region: 51 - 186 Aligned: 136 Modelled: 132 Confidence: 99.5% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 Phyre2 PDB 2p0s chain A domain 1 Region: 48 - 144 Aligned: 88 Modelled: 90 Confidence: 95.1% Identity: 16% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: PG0945 N-terminal domain-like Phyre2 PDB 3r0j chain A Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 83.3% Identity: 13% PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Phyre2 PDB 3cg4 chain A Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 81.1% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 Phyre2 PDB 2gwr chain A Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 80.8% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis Phyre2 PDB 1xhf chain A domain 1 Region: 48 - 100 Aligned: 52 Modelled: 52 Confidence: 80.6% Identity: 17% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1kgs chain A Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 80.1% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Phyre2 PDB 1dbw chain A Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 78.5% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3hv2 chain B Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 77.8% Identity: 13% PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 Phyre2 PDB 2rjn chain A Region: 46 - 100 Aligned: 54 Modelled: 55 Confidence: 76.6% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis Phyre2 PDB 1ys7 chain A domain 2 Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 76.2% Identity: 12% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1zgz chain A domain 1 Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 74.8% Identity: 10% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3t6k chain B Region: 48 - 100 Aligned: 52 Modelled: 53 Confidence: 73.7% Identity: 10% PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution Phyre2 PDB 3grc chain D Region: 49 - 100 Aligned: 51 Modelled: 49 Confidence: 73.7% Identity: 12% PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 Phyre2 PDB 3a0r chain B Region: 51 - 100 Aligned: 49 Modelled: 50 Confidence: 73.6% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) Phyre2 PDB 2qxy chain B Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 73.5% Identity: 10% PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima Phyre2 PDB 2ayx chain A domain 1 Region: 45 - 100 Aligned: 55 Modelled: 56 Confidence: 72.3% Identity: 7% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1kgs chain A domain 2 Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 71.3% Identity: 12% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1ys7 chain B Region: 49 - 100 Aligned: 51 Modelled: 52 Confidence: 71.1% Identity: 12% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ Phyre2 PDB 1zh2 chain A domain 1 Region: 51 - 100 Aligned: 49 Modelled: 50 Confidence: 71.0% Identity: 10% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 1 c3cniA_ 2 d2p0sa1 3 c3r0jA_ 4 c3cg4A_ 5 c2gwrA_ 6 d1xhfa1 7 c1kgsA_ 8 d1dbwa_ 9 c3hv2B_ 10 c2rjnA_ 11 d1ys7a2 12 d1zgza1 13 c3t6kB_ 14 c3grcD_ 15 c3a0rB_ 16 c2qxyB_ 17 d2ayxa1 18 d1kgsa2 19 c1ys7B_ 20 d1zh2a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cniA_ 99.5 12 PDB header:transport protein Chain: A: PDB Molecule:putative abc type-2 transporter; PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8 2 d2p0sa1 95.1 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:PG0945 N-terminal domain-like 3 c3r0jA_ 83.3 13 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 4 c3cg4A_ 81.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 5 c2gwrA_ 80.8 11 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 6 d1xhfa1 80.6 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 7 c1kgsA_ 80.1 12 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 8 d1dbwa_ 78.5 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 9 c3hv2B_ 77.8 13 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 10 c2rjnA_ 76.6 11 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 11 d1ys7a2 76.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 12 d1zgza1 74.8 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 13 c3t6kB_ 73.7 10 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 14 c3grcD_ 73.7 12 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 15 c3a0rB_ 73.6 14 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 16 c2qxyB_ 73.5 10 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 17 d2ayxa1 72.3 7 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 18 d1kgsa2 71.3 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 19 c1ys7B_ 71.1 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 20 d1zh2a1 71.0 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 21 c3nhzA_ not modelled 71.0 12 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 22 c3c3mA_ not modelled 70.6 18 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 23 c2zayA_ not modelled 69.9 14 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 24 c2oqrA_ not modelled 69.3 12 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 25 c2jrlA_ not modelled 68.6 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 26 d2pl1a1 not modelled 67.8 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 27 d1peya_ not modelled 67.7 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 28 d1mb3a_ not modelled 66.6 4 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 29 c3hdgE_ not modelled 66.5 10 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 30 c2qr3A_ not modelled 66.3 10 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 31 d1a04a2 not modelled 66.0 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 32 c2qzjC_ not modelled 65.9 10 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 33 d1s8na_ not modelled 65.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 34 d1yioa2 not modelled 65.1 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 35 d1ny5a1 not modelled 64.9 6 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 36 d1jbea_ not modelled 64.9 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 37 c1zn2A_ not modelled 64.7 10 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 38 c3cfyA_ not modelled 63.7 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 39 c3c97A_ not modelled 62.5 8 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 40 c3lteH_ not modelled 62.3 11 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 41 d1zesa1 not modelled 62.0 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 42 c3eq2A_ not modelled 61.6 12 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 43 d1mvoa_ not modelled 60.7 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 44 c3eulB_ not modelled 59.7 11 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 45 c2zwmA_ not modelled 58.6 8 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 46 c1ny5A_ not modelled 58.3 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 47 d1w25a1 not modelled 58.2 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 48 c3i42A_ not modelled 58.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 49 d2a9pa1 not modelled 58.1 18 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 50 c1rnlA_ not modelled 57.5 12 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 51 c3dzdA_ not modelled 56.3 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 52 d1krwa_ not modelled 56.3 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 53 c2nt3A_ not modelled 55.4 14 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 54 d1p6qa_ not modelled 55.2 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 55 c2rdmB_ not modelled 54.9 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 56 c3rqiA_ not modelled 54.3 14 PDB header:transcription Chain: A: PDB Molecule:response regulator protein; PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate 57 c3nhmA_ not modelled 54.2 8 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 58 c1w25B_ not modelled 53.2 10 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 59 d1heya_ not modelled 52.9 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 60 c3crnA_ not modelled 52.4 19 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 61 c3gl9B_ not modelled 52.1 10 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 62 c2j48A_ not modelled 50.8 8 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 63 c3gt7A_ not modelled 49.0 14 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 64 c2ayxA_ not modelled 48.4 7 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 65 c1a2oB_ not modelled 48.3 4 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 66 c3k2dA_ not modelled 48.2 10 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 67 c3hdvB_ not modelled 47.7 8 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 68 c3lufB_ not modelled 44.9 14 PDB header:signaling protein Chain: B: PDB Molecule:two-component system response regulator/ggdef PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein 69 c3fkqA_ not modelled 43.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution 70 d1a2oa1 not modelled 43.2 4 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 71 c3ktoA_ not modelled 42.1 10 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 72 c3f6cB_ not modelled 40.9 14 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 73 d1dz3a_ not modelled 40.5 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 c3cz5B_ not modelled 39.9 15 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 75 c3t8yA_ not modelled 39.8 6 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 76 c3cnbC_ not modelled 36.8 10 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 77 c3b2nA_ not modelled 33.9 14 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 78 c3ir1F_ not modelled 32.9 9 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 79 c3jteA_ not modelled 32.1 16 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 80 c2qv0A_ not modelled 31.7 6 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 81 d2b4aa1 not modelled 29.8 4 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 82 d1u0sy_ not modelled 29.7 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 83 c3klnC_ not modelled 28.7 11 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst 84 c3h5iA_ not modelled 28.4 18 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 85 c3n53B_ not modelled 27.8 23 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 86 d1qkka_ not modelled 25.7 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 87 c3breA_ not modelled 25.3 12 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 88 c3i5aA_ not modelled 23.2 12 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 89 c3hzhA_ not modelled 19.7 13 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 90 c2hqrA_ not modelled 18.6 12 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 91 c2q5cA_ not modelled 18.6 8 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 92 c3c3wB_ not modelled 17.8 18 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 93 c3snkA_ not modelled 17.7 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator chey-like protein; PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution 94 c3gxaA_ not modelled 17.6 9 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 95 c3kyiB_ not modelled 17.1 13 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 96 c3khtA_ not modelled 16.4 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 97 c2jk1A_ not modelled 15.8 16 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 98 c2hqoA_ not modelled 15.1 13 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 99 c3luaA_ not modelled 14.8 8 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0