Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	L	I	N	G	H	K	Q	E	S	L	A	V	S	D	R	A	T	Q	F	G	D	G	C	F	T	T	A	R	V	I	D	G	K	V	S	L	L	S	A	H	I	Q	R	L	Q	D	A	C	Q	R	L	M	I	S	C	D	F	W
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	Q	L	E	Q	E	M	K	T	L	A	A	E	Q	Q	N	G	V	L	K	V	V	I	S	R	G	S	G	G	R	G	Y	S	T	L	N	S	G	P	A	T	R	I	L	S	V	T	A	Y	P	A	H	Y	D	R	L	R	N	E	G
Secondary structure
SS confidence
Disorder																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	T	L	A	L	S	P	V	R	L	G	R	N	P	H	L	A	G	I	K	H	L	N	R	L	E	Q	V	L	I	R	S	H	L	E	Q	T	N	A	D	E	A	L	V	L	D	S	E	G	W	V	T	E	C	C	A	A	N	L	F
Secondary structure
SS confidence
Disorder														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		W	R	K	G	N	V	V	Y	T	P	R	L	D	Q	A	G	V	N	G	I	M	R	Q	F	C	I	R	L	L	A	Q	S	S	Y	Q	L	V	E	V	Q	A	S	L	E	E	S	L	Q	A	D	E	M	V	I	C	N	A	L	M	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Sequence		V	M	P	V	C	A	C	G	D	V	S	F	S	S	A	T	L	Y	E	Y	L	A	P	L	C	E	R	P	N
Secondary structure
SS confidence
Disorder																											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1i2k chain A Region: 1 - 269 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 100% Fold: D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes Family: D-aminoacid aminotransferase-like PLP-dependent enzymes Phyre2 PDB 2xpf chain B Region: 1 - 267 Aligned: 266 Modelled: 267 Confidence: 100.0% Identity: 33% PDB header:lyase Chain: B: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative aminodeoxychorismate lyase2 from pseudomonas aeruginosa Phyre2 PDB 1wrv chain B Region: 1 - 268 Aligned: 267 Modelled: 268 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:branched-chain amino acid aminotransferase; PDBTitle: crystal structure of t.th.hb8 branched-chain amino acid2 aminotransferase Phyre2 PDB 1iye chain A Region: 2 - 268 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 21% Fold: D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes Family: D-aminoacid aminotransferase-like PLP-dependent enzymes Phyre2 PDB 1daa chain A Region: 2 - 267 Aligned: 262 Modelled: 266 Confidence: 100.0% Identity: 21% Fold: D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes Family: D-aminoacid aminotransferase-like PLP-dependent enzymes Phyre2 PDB 3lul chain A Region: 3 - 267 Aligned: 257 Modelled: 259 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase.2 (yp_094631.1) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 1.78 a resolution Phyre2 PDB 3csw chain B Region: 1 - 268 Aligned: 251 Modelled: 256 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution Phyre2 PDB 3dtf chain B Region: 3 - 268 Aligned: 264 Modelled: 266 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:branched-chain amino acid aminotransferase; PDBTitle: structural analysis of mycobacterial branched chain aminotransferase-2 implications for inhibitor design Phyre2 PDB 2a1h chain A domain 1 Region: 3 - 268 Aligned: 264 Modelled: 264 Confidence: 100.0% Identity: 15% Fold: D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes Family: D-aminoacid aminotransferase-like PLP-dependent enzymes Phyre2 PDB 2zgi chain A Region: 3 - 265 Aligned: 240 Modelled: 263 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: A: PDB Molecule:putative 4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase Phyre2 PDB 2abj chain G Region: 3 - 268 Aligned: 258 Modelled: 266 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic; PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate. Phyre2 PDB 3sno chain A Region: 8 - 267 Aligned: 216 Modelled: 230 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution Phyre2 PDB 3qqm chain D Region: 18 - 247 Aligned: 208 Modelled: 214 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: D: PDB Molecule:mlr3007 protein; PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution Phyre2 PDB 3ceb chain A Region: 21 - 241 Aligned: 188 Modelled: 195 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:d-aminoacid aminotransferase-like plp-dependent enzyme; PDBTitle: crystal structure of a putative 4-amino-4-deoxychorismate lyase2 (hs_0128) from haemophilus somnus 129pt at 2.40 a resolution Phyre2 PDB 1ljr chain A domain 2 Region: 203 - 266 Aligned: 64 Modelled: 64 Confidence: 64.7% Identity: 13% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 PDB 1jlv chain A domain 2 Region: 203 - 269 Aligned: 67 Modelled: 67 Confidence: 54.6% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 PDB 1oyj chain A domain 2 Region: 203 - 265 Aligned: 61 Modelled: 63 Confidence: 53.5% Identity: 20% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 PDB 1aw9 chain A domain 2 Region: 203 - 265 Aligned: 63 Modelled: 63 Confidence: 52.4% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 PDB 1axd chain A domain 2 Region: 203 - 265 Aligned: 63 Modelled: 63 Confidence: 44.1% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 PDB 1r5a chain A domain 2 Region: 203 - 265 Aligned: 63 Modelled: 63 Confidence: 41.9% Identity: 13% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione S-transferase (GST), N-terminal domain Phyre2 1 d1i2ka_ 2 c2xpfB_ 3 c1wrvB_ 4 d1iyea_ 5 d1daaa_ 6 c3lulA_ 7 c3cswB_ 8 c3dtfB_ 9 d2a1ha1 10 c2zgiA_ 11 c2abjG_ 12 c3snoA_ 13 c3qqmD_ 14 c3cebA_ 15 d1ljra2 16 d1jlva2 17 d1oyja2 18 d1aw9a2 19 d1axda2 20 d1r5aa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1i2ka_ 100.0 100 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 2 c2xpfB_ 100.0 33 PDB header:lyase Chain: B: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative aminodeoxychorismate lyase2 from pseudomonas aeruginosa 3 c1wrvB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:branched-chain amino acid aminotransferase; PDBTitle: crystal structure of t.th.hb8 branched-chain amino acid2 aminotransferase 4 d1iyea_ 100.0 21 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 5 d1daaa_ 100.0 21 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 6 c3lulA_ 100.0 23 PDB header:lyase Chain: A: PDB Molecule:4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase.2 (yp_094631.1) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 1.78 a resolution 7 c3cswB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution 8 c3dtfB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:branched-chain amino acid aminotransferase; PDBTitle: structural analysis of mycobacterial branched chain aminotransferase-2 implications for inhibitor design 9 d2a1ha1 100.0 15 Fold:D-aminoacid aminotransferase-like PLP-dependent enzymes Superfamily:D-aminoacid aminotransferase-like PLP-dependent enzymes Family:D-aminoacid aminotransferase-like PLP-dependent enzymes 10 c2zgiA_ 100.0 23 PDB header:lyase Chain: A: PDB Molecule:putative 4-amino-4-deoxychorismate lyase; PDBTitle: crystal structure of putative 4-amino-4-deoxychorismate lyase 11 c2abjG_ 100.0 15 PDB header:transferase Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic; PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate. 12 c3snoA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution 13 c3qqmD_ 100.0 22 PDB header:transferase Chain: D: PDB Molecule:mlr3007 protein; PDBTitle: crystal structure of a putative amino-acid aminotransferase2 (np_104211.1) from mesorhizobium loti at 2.30 a resolution 14 c3cebA_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:d-aminoacid aminotransferase-like plp-dependent enzyme; PDBTitle: crystal structure of a putative 4-amino-4-deoxychorismate lyase2 (hs_0128) from haemophilus somnus 129pt at 2.40 a resolution 15 d1ljra2 64.7 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 16 d1jlva2 54.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 17 d1oyja2 53.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 18 d1aw9a2 52.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 19 d1axda2 44.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 20 d1r5aa2 41.9 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 21 d1pn9a2 not modelled 38.2 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 22 c2klxA_ not modelled 36.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 23 d1gnwa2 not modelled 33.8 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 24 d1e6ba2 not modelled 32.8 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 25 d1k3ya2 not modelled 32.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 26 d1v2aa2 not modelled 27.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 27 c2cb1A_ not modelled 27.0 23 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 28 d1rxxa_ not modelled 22.0 18 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 29 d2fnoa2 not modelled 22.0 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 30 d1tw9a2 not modelled 20.8 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 31 d1fhea2 not modelled 18.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 32 d1ev4a2 not modelled 18.1 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 33 c8jdwA_ not modelled 17.9 5 PDB header:transferase Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase); PDBTitle: crystal structure of human l-arginine:glycine2 amidinotransferase in complex with l-alanine 34 d1jdwa_ not modelled 16.9 5 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase 35 c1jdwA_ not modelled 16.9 5 PDB header:transferase Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase; PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis 36 d1tu7a2 not modelled 16.9 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 37 d1gwca2 not modelled 16.4 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 38 c3kgkA_ not modelled 15.8 12 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 39 d2gk3a1 not modelled 15.8 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like 40 d1pd212 not modelled 15.4 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 41 c3ktbD_ not modelled 15.4 7 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 42 d1r7ha_ not modelled 15.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 43 d1nm3a1 not modelled 14.6 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 44 d2gsta2 not modelled 14.5 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 45 d1jlwa2 not modelled 14.5 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 46 d1h75a_ not modelled 14.0 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 47 d1xw6a2 not modelled 13.7 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 48 c3h1nA_ not modelled 13.3 11 PDB header:transferase Chain: A: PDB Molecule:probable glutathione s-transferase; PDBTitle: crystal structure of probable glutathione s-transferase from2 bordetella bronchiseptica rb50 49 d1t1va_ not modelled 13.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like) 50 c3ndnC_ not modelled 13.1 14 PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 51 d1fw1a2 not modelled 12.8 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 52 d1glqa2 not modelled 12.6 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 53 d2fhea2 not modelled 12.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 54 d1duga2 not modelled 11.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 55 d1bwda_ not modelled 11.0 21 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase 56 c2hueB_ not modelled 10.8 9 PDB header:dna binding protein Chain: B: PDB Molecule:histone h3; PDBTitle: structure of the h3-h4 chaperone asf1 bound to histones h3 and h4 57 d2c4ja2 not modelled 10.7 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 58 d2nv0a1 not modelled 10.5 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 59 c2nmpC_ not modelled 10.4 14 PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase 60 d1rk4a2 not modelled 10.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 61 d1s9ra_ not modelled 9.9 11 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 62 d2ftsa3 not modelled 9.8 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 63 d2a2ra2 not modelled 9.7 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 64 d2gsqa2 not modelled 9.5 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 65 c1ua5A_ not modelled 9.4 21 PDB header:transferase Chain: A: PDB Molecule:glutathione s-transferase; PDBTitle: non-fusion gst from s. japonicum in complex with glutathione 66 d2f99a1 not modelled 9.0 11 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 67 d1kx5a_ not modelled 9.0 7 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 68 d1k0da2 not modelled 9.0 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 69 d1p3ie_ not modelled 8.8 9 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 70 c1ibjC_ not modelled 8.7 12 PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana 71 c2c5sA_ not modelled 8.7 15 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 72 c2jl4A_ not modelled 8.6 7 PDB header:isomerase Chain: A: PDB Molecule:maleylpyruvate isomerase; PDBTitle: holo structure of maleyl pyruvate isomerase, a bacterial2 glutathione-s-transferase in zeta class 73 d2c5sa1 not modelled 8.5 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 74 d2cvda2 not modelled 8.0 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 75 d2gsra2 not modelled 7.9 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 76 d1dzfa1 not modelled 7.9 5 Fold:Restriction endonuclease-like Superfamily:Eukaryotic RPB5 N-terminal domain Family:Eukaryotic RPB5 N-terminal domain 77 d1b48a2 not modelled 7.8 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 78 c1y1yE_ not modelled 7.8 6 PDB header:transferase/transcription/dna-rna hybrid Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii 27 PDBTitle: rna polymerase ii-tfiis-dna/rna complex 79 d1m0ua2 not modelled 7.7 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 80 c3b4oB_ not modelled 7.7 14 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 81 c1htmB_ not modelled 7.4 50 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin ha2 chain; PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion 82 d1eqzg_ not modelled 7.4 9 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 83 d1k0dd2 not modelled 7.2 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 84 d1ng7a_ not modelled 6.8 8 Fold:Soluble domain of poliovirus core protein 3a Superfamily:Soluble domain of poliovirus core protein 3a Family:Soluble domain of poliovirus core protein 3a 85 c2kppA_ not modelled 6.7 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112 86 c3ff0A_ not modelled 6.6 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2; PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution 87 c1tw9C_ not modelled 6.6 20 PDB header:transferase Chain: C: PDB Molecule:glutathione s-transferase 2; PDBTitle: glutathione transferase-2, apo form, from the nematode heligmosomoides2 polygyrus 88 d1ibja_ not modelled 6.5 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 89 c3lkxA_ not modelled 6.5 22 PDB header:chaperone Chain: A: PDB Molecule:transcription factor btf3; PDBTitle: human nac dimerization domain 90 d1ygya4 not modelled 6.4 18 Fold:FwdE/GAPDH domain-like Superfamily:Serine metabolism enzymes domain Family:SerA intervening domain-like 91 c2k6tA_ not modelled 6.2 21 PDB header:hormone Chain: A: PDB Molecule:insulin-like 3 a chain; PDBTitle: solution structure of the relaxin-like factor 92 d1id3a_ not modelled 6.2 6 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 93 d1gula2 not modelled 6.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 94 d2hqya2 not modelled 6.1 7 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 95 d1tzyc_ not modelled 6.0 7 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 96 c1gumA_ not modelled 6.0 12 PDB header:transferase Chain: A: PDB Molecule:protein (glutathione transferase a4-4); PDBTitle: human glutathione transferase a4-4 without ligands 97 d1vk9a_ not modelled 5.9 11 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Hypothetical protein TM1506 98 d1vbka1 not modelled 5.8 6 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 99 d2a1ja1 not modelled 5.8 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0