Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	L	T	A	Y	T	L	R	L	G	D	N	C	L	V	L	S	Q	R	L	G	E	W	C	G	H	A	P	E	L	E	I	D	L	A	L	A	N	I	G	L	D	L	L	G	Q	A	R	N	F	L	S	Y	A	A	E	L	A
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	G	D	E	D	T	L	A	F	T	R	D	E	R	Q	F	S	N	L	L	L	V	E	Q	P	N	G	N	F	A	D	T	I	A	R	Q	Y	F	I	D	A	W	H	V	A	L	F	T	R	L	M	E	S	R	D	P	Q	L	A
Secondary structure
SS confidence
Disorder			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	S	A	K	A	I	K	E	A	R	Y	H	L	R	F	S	R	G	W	L	E	R	L	G	N	G	T	D	V	S	G	Q	K	M	Q	Q	A	I	N	K	L	W	R	F	T	A	E	L	F	D	A	D	E	I	D	I	A	L	S
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	E	G	I	A	V	D	P	R	T	L	R	A	A	W	E	A	E	V	F	A	G	I	N	E	A	T	L	N	V	P	Q	E	Q	A	Y	R	T	G	G	K	K	G	L	H	T	E	H	L	G	P	M	L	A	E	M	Q	Y	L	Q
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		R	V	L	P	G	Q	Q	W
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1otk chain A Region: 2 - 243 Aligned: 242 Modelled: 242 Confidence: 100.0% Identity: 100% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3pw1 chain A Region: 3 - 215 Aligned: 211 Modelled: 213 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa Phyre2 PDB 3pm5 chain B Region: 2 - 225 Aligned: 224 Modelled: 224 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa Phyre2 PDB 1mty chain D Region: 1 - 211 Aligned: 207 Modelled: 211 Confidence: 98.2% Identity: 13% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3dhi chain A Region: 1 - 211 Aligned: 197 Modelled: 211 Confidence: 98.1% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein Phyre2 PDB 2inc chain A domain 1 Region: 4 - 211 Aligned: 205 Modelled: 208 Confidence: 98.1% Identity: 12% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2inp chain D Region: 2 - 213 Aligned: 200 Modelled: 203 Confidence: 97.7% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex Phyre2 PDB 2oc5 chain A domain 1 Region: 1 - 209 Aligned: 192 Modelled: 209 Confidence: 97.7% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: PMT1231-like Phyre2 PDB 2fzf chain A domain 1 Region: 4 - 146 Aligned: 142 Modelled: 143 Confidence: 97.6% Identity: 8% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 3ez0 chain D Region: 3 - 126 Aligned: 120 Modelled: 121 Confidence: 97.3% Identity: 10% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold; PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution Phyre2 PDB 3dhg chain B Region: 4 - 168 Aligned: 162 Modelled: 165 Confidence: 97.1% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit; PDBTitle: crystal struture of toluene 4-monoxygenase hydroxylase Phyre2 PDB 1mhy chain D Region: 29 - 211 Aligned: 180 Modelled: 183 Confidence: 96.9% Identity: 11% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2inc chain B domain 1 Region: 4 - 168 Aligned: 162 Modelled: 165 Confidence: 96.8% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1mhy chain B Region: 4 - 211 Aligned: 204 Modelled: 208 Confidence: 96.8% Identity: 12% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2inn chain A Region: 4 - 211 Aligned: 192 Modelled: 198 Confidence: 96.5% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex Phyre2 PDB 1jgc chain A Region: 38 - 144 Aligned: 94 Modelled: 94 Confidence: 96.0% Identity: 16% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ferritin Phyre2 PDB 2oh3 chain A domain 1 Region: 1 - 144 Aligned: 139 Modelled: 144 Confidence: 95.7% Identity: 9% Fold: Ferritin-like Superfamily: Ferritin-like Family: AMB4284-like Phyre2 PDB 3bkn chain B Region: 3 - 144 Aligned: 129 Modelled: 129 Confidence: 95.5% Identity: 12% PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin Phyre2 PDB 3ee4 chain A Region: 30 - 169 Aligned: 140 Modelled: 140 Confidence: 95.3% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis Phyre2 PDB 2o1z chain A Region: 28 - 211 Aligned: 173 Modelled: 184 Confidence: 95.2% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) Phyre2 1 d1otka_ 2 c3pw1A_ 3 c3pm5B_ 4 d1mtyd_ 5 c3dhiA_ 6 d2inca1 7 c2inpD_ 8 d2oc5a1 9 d2fzfa1 10 c3ez0D_ 11 c3dhgB_ 12 d1mhyd_ 13 d2incb1 14 d1mhyb_ 15 c2innA_ 16 d1jgca_ 17 d2oh3a1 18 c3bknB_ 19 c3ee4A_ 20 c2o1zA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1otka_ 100.0 100 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 2 c3pw1A_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa 3 c3pm5B_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa 4 d1mtyd_ 98.2 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 5 c3dhiA_ 98.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein 6 d2inca1 98.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 7 c2inpD_ 97.7 17 PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex 8 d2oc5a1 97.7 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:PMT1231-like 9 d2fzfa1 97.6 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 10 c3ez0D_ 97.3 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold; PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution 11 c3dhgB_ 97.1 15 PDB header:oxidoreductase Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit; PDBTitle: crystal struture of toluene 4-monoxygenase hydroxylase 12 d1mhyd_ 96.9 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 13 d2incb1 96.8 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 14 d1mhyb_ 96.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 15 c2innA_ 96.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex 16 d1jgca_ 96.0 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 17 d2oh3a1 95.7 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 18 c3bknB_ 95.5 12 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 19 c3ee4A_ 95.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 20 c2o1zA_ 95.2 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) 21 d1rcwa_ not modelled 94.8 11 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 22 d1mxra_ not modelled 94.8 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 23 c2vzbA_ not modelled 94.8 9 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 24 d1vjxa_ not modelled 94.6 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 25 c2vuxB_ not modelled 94.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b 26 d1j30a_ not modelled 94.3 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 27 c2rccC_ not modelled 94.1 8 PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution 28 c3ddeB_ not modelled 93.9 12 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 29 c2p1iA_ not modelled 93.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) 30 c2clbP_ not modelled 93.7 10 PDB header:metal binding protein Chain: P: PDB Molecule:dps-like protein; PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly 31 d1w68a_ not modelled 93.4 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 32 c1h0oA_ not modelled 93.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state 33 d1smsa_ not modelled 93.2 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 34 c3hf1B_ not modelled 93.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 35 c3fvbB_ not modelled 92.9 11 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 36 c3gvyC_ not modelled 92.3 11 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 37 c1yfdA_ not modelled 92.2 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli 38 d2htna1 not modelled 92.2 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 39 d1lkoa1 not modelled 92.1 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 40 d2fkza1 not modelled 92.0 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 41 c3bjdA_ not modelled 91.8 15 PDB header:transferase Chain: A: PDB Molecule:putative 3-oxoacyl-(acyl-carrier-protein) synthase; PDBTitle: crystal structure of putative 3-oxoacyl-(acyl-carrier-protein)2 synthase from pseudomonas aeruginosa 42 d1nf4a_ not modelled 90.3 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 43 c3qhbA_ not modelled 90.3 15 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 44 d1yv1a1 not modelled 90.2 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 45 c1dvbA_ not modelled 89.7 8 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 46 d1syya_ not modelled 88.3 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 47 c1syyA_ not modelled 88.3 11 PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis 48 d1za0a1 not modelled 88.3 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 49 c1r2fB_ not modelled 87.7 12 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 50 d1jkva_ not modelled 87.6 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 51 d1r2fa_ not modelled 87.5 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 52 d1uzra_ not modelled 87.4 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 53 c3oqlB_ not modelled 87.0 10 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 54 d1afra_ not modelled 85.7 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 55 c3oghB_ not modelled 85.3 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 56 d1nnqa1 not modelled 85.0 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 57 c3e6sD_ not modelled 84.5 11 PDB header:oxidoreductase Chain: D: PDB Molecule:ferritin; PDBTitle: crystal structure of ferritin soaked with iron from pseudo-2 nitzschia multiseries 58 d3dhza1 not modelled 84.3 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 59 c3r2rA_ not modelled 83.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 60 c2qqyA_ not modelled 83.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 61 c2rd3A_ not modelled 82.8 12 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori 62 d2itba1 not modelled 81.6 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:MiaE-like 63 d1jk0a_ not modelled 80.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 64 c1smqD_ not modelled 79.9 9 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae 65 d1vlga_ not modelled 79.1 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 66 c3q4nA_ not modelled 77.4 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 67 c2hr5B_ not modelled 77.2 17 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 68 d1yuza1 not modelled 75.6 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 69 c2qcxA_ not modelled 73.8 14 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine 70 d1jk0b_ not modelled 73.0 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 71 d1oquc_ not modelled 69.5 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 72 c3bvkC_ not modelled 68.0 11 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 73 d1z72a1 not modelled 66.8 17 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 74 d1euma_ not modelled 66.5 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 75 d1krqa_ not modelled 52.6 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 76 c3oqlA_ not modelled 46.8 11 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 77 d1otva_ not modelled 45.8 10 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 78 d2hgsa4 not modelled 44.4 22 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Eukaryotic glutathione synthetase ATP-binding domain 79 c3bt5A_ not modelled 42.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf305; PDBTitle: crystal structure of duf305 fragment from deinococcus2 radiodurans 80 d1s3qa1 not modelled 40.7 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 81 c3chtA_ not modelled 40.3 10 PDB header:oxidoreductase Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase; PDBTitle: crystal structure of di-iron aurf with partially bound ligand 82 c3qd8M_ not modelled 38.3 8 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 83 d1udda_ not modelled 36.2 9 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 84 d2gm8a1 not modelled 34.0 12 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 85 c2y69R_ not modelled 29.9 19 PDB header:electron transport Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 86 c3no6B_ not modelled 28.4 11 PDB header:hydrolase Chain: B: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of a putative thiaminase ii (se1693) from2 staphylococcus epidermidis atcc 12228 at 1.65 a resolution 87 d1v54e_ not modelled 27.1 19 Fold:alpha-alpha superhelix Superfamily:Cytochrome c oxidase subunit E Family:Cytochrome c oxidase subunit E 88 d1zpya1 not modelled 26.4 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:half-ferritin 89 c3qz3A_ not modelled 25.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ferritin; PDBTitle: the crystal structure of ferritin from vibrio cholerae o1 biovar el2 tor str. n16961 90 c3fpvC_ not modelled 24.7 35 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 91 c1to9A_ not modelled 24.0 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis 92 d1to9a_ not modelled 24.0 13 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 93 c2jd8C_ not modelled 22.4 17 PDB header:metal transport Chain: C: PDB Molecule:ferritin homolog; PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus 94 c2yumA_ not modelled 20.9 21 PDB header:transcription Chain: A: PDB Molecule:zinc finger zz-type-containing protein 3; PDBTitle: solution structure of the myb-like dna-binding domain of2 human zzz3 protein 95 c3h3mB_ not modelled 20.6 14 PDB header:structural genomics Chain: B: PDB Molecule:flagellar protein flit; PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica 96 c1yuzB_ not modelled 20.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 97 d1mtyb_ not modelled 15.8 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 98 d2qdya1 not modelled 14.2 15 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 99 d1r03a_ not modelled 14.0 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0