Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	L	I	T	A	N	D	I	R	E	A	H	A	R	G	E	Q	A	M	S	V	V	L	R	A	S	I	I	T	P	E	A	R	E	V	A	D	L	L	G	F	T	I	T	E	C	D	E	S	I	P	V	T	A	S	V	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																												?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	P	A	D	K	T	E	S	Q	R	I	R	E	T	I	I	A	Q	L	P	E	G	Q	F	T	E	S	L	V	A	Q	L	M	E	K	V	M	K	E	K	Q	S	L	E	Q	G	A	M	Q	P	S	F	K	S	V	T	G	K	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	I	K	V	I	D	G	S	S	V	K	F	G	R	F	D	G	A	E	P	H	C	V	G	L	T	D	L	V	T	G	D	D	G	S	S	M	A	A	G	F	M	Q	W	E	N	A	F	F	P	W	T	L	N	Y	D	E	I	D	M
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence		V	L	E	G	E	L	H	V	R	H	E	G	Q	T	M	I	A	K	A	G	D	V	M	F	I	P	K	G	S	S	I	E	F	G	T	T	S	S	V	K	F	L	Y	V	A	W	P	A	N	W	Q	S	L
Secondary structure
SS confidence
Disorder																																																			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pyt chain A domain 1 Region: 104 - 231 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 87% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: EutQ-like Phyre2 PDB 3myx chain A Region: 106 - 232 Aligned: 119 Modelled: 127 Confidence: 99.9% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution Phyre2 PDB 1o5u chain A Region: 151 - 226 Aligned: 76 Modelled: 76 Confidence: 99.7% Identity: 22% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Hypothetical protein TM1112 Phyre2 PDB 3lwc chain A Region: 149 - 227 Aligned: 79 Modelled: 79 Confidence: 99.7% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution Phyre2 PDB 3bcw chain B Region: 131 - 226 Aligned: 94 Modelled: 96 Confidence: 99.7% Identity: 22% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution Phyre2 PDB 3es4 chain B Region: 144 - 227 Aligned: 84 Modelled: 84 Confidence: 99.6% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution Phyre2 PDB 1vj2 chain A Region: 122 - 227 Aligned: 106 Modelled: 106 Confidence: 99.3% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1459-like Phyre2 PDB 2vpv chain A Region: 141 - 225 Aligned: 84 Modelled: 85 Confidence: 99.3% Identity: 13% PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p Phyre2 PDB 1y3t chain A domain 1 Region: 140 - 233 Aligned: 94 Modelled: 94 Confidence: 99.2% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 2gu9 chain B Region: 135 - 232 Aligned: 94 Modelled: 98 Confidence: 99.2% Identity: 18% PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure Phyre2 PDB 2bnm chain A domain 2 Region: 119 - 226 Aligned: 108 Modelled: 108 Confidence: 99.2% Identity: 19% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1459-like Phyre2 PDB 2o8q chain A Region: 145 - 231 Aligned: 87 Modelled: 87 Confidence: 99.2% Identity: 17% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution Phyre2 PDB 2pfw chain B Region: 120 - 228 Aligned: 102 Modelled: 109 Confidence: 99.2% Identity: 18% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution Phyre2 PDB 3jzv chain A Region: 128 - 227 Aligned: 100 Modelled: 96 Confidence: 99.2% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. Phyre2 PDB 1juh chain A Region: 169 - 233 Aligned: 65 Modelled: 65 Confidence: 99.2% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 1y9q chain A domain 2 Region: 139 - 227 Aligned: 89 Modelled: 89 Confidence: 99.2% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Probable transcriptional regulator VC1968, C-terminal domain Phyre2 PDB 3ht2 chain A Region: 123 - 233 Aligned: 110 Modelled: 111 Confidence: 99.2% Identity: 22% PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus Phyre2 PDB 3ibm chain B Region: 137 - 228 Aligned: 92 Modelled: 92 Confidence: 99.1% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila Phyre2 PDB 3kgz chain A Region: 129 - 227 Aligned: 99 Modelled: 99 Confidence: 99.1% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris Phyre2 PDB 1sfn chain A Region: 125 - 226 Aligned: 102 Modelled: 102 Confidence: 99.1% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 2bno chain A Region: 62 - 226 Aligned: 157 Modelled: 157 Confidence: 99.1% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. Phyre2 PDB 1g7s chain A domain 3 Region: 5 - 48 Aligned: 43 Modelled: 43 Confidence: 72.9% Identity: 9% Fold: Initiation factor IF2/eIF5b, domain 3 Superfamily: Initiation factor IF2/eIF5b, domain 3 Family: Initiation factor IF2/eIF5b, domain 3 Phyre2 PDB 1w4h chain A domain 1 Region: 30 - 76 Aligned: 37 Modelled: 37 Confidence: 58.7% Identity: 5% Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Phyre2 1 d2pyta1 2 c3myxA_ 3 d1o5ua_ 4 c3lwcA_ 5 c3bcwB_ 6 c3es4B_ 7 d1vj2a_ 8 c2vpvA_ 9 d1y3ta1 10 c2gu9B_ 11 d2bnma2 12 c2o8qA_ 13 c2pfwB_ 14 c3jzvA_ 15 d1juha_ 16 d1y9qa2 17 c3ht2A_ 18 c3ibmB_ 19 c3kgzA_ 20 d1sfna_ 21 c2bnoA_ 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 d1g7sa3 139 140 141 142 143 144 145 146 d1w4ha1 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2pyta1 100.0 87 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 2 c3myxA_ 99.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 3 d1o5ua_ 99.7 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 4 c3lwcA_ 99.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 5 c3bcwB_ 99.7 22 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 6 c3es4B_ 99.6 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 7 d1vj2a_ 99.3 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 8 c2vpvA_ 99.3 13 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 9 d1y3ta1 99.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 10 c2gu9B_ 99.2 18 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 11 d2bnma2 99.2 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 12 c2o8qA_ 99.2 17 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 13 c2pfwB_ 99.2 18 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 14 c3jzvA_ 99.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 15 d1juha_ 99.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 16 d1y9qa2 99.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 17 c3ht2A_ 99.2 22 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 18 c3ibmB_ 99.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 19 c3kgzA_ 99.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 20 d1sfna_ 99.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 21 c2bnoA_ 99.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 22 d1o4ta_ not modelled 99.1 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 23 c2ozjB_ not modelled 99.1 14 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 24 c3i7dB_ not modelled 99.1 23 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 25 d2b8ma1 not modelled 99.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 26 d1sq4a_ not modelled 99.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 27 d2f4pa1 not modelled 99.0 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 28 d1sefa_ not modelled 99.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 29 c1sefA_ not modelled 99.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 30 d1rc6a_ not modelled 99.0 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 31 c3cewA_ not modelled 99.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 32 c3l2hD_ not modelled 99.0 16 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 33 c2i45C_ not modelled 99.0 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 34 c3h8uA_ not modelled 99.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 35 d1v70a_ not modelled 99.0 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 36 c1y9qA_ not modelled 99.0 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 37 c2oa2A_ not modelled 99.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 38 c3fjsC_ not modelled 99.0 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 39 d1dgwa_ not modelled 98.9 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 40 c2q30C_ not modelled 98.9 19 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 41 c3d82A_ not modelled 98.9 22 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 42 d1uika1 not modelled 98.9 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 43 d1yhfa1 not modelled 98.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 44 c2d40C_ not modelled 98.8 18 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 45 d2phda1 not modelled 98.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 46 d1lr5a_ not modelled 98.8 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 47 d1uija1 not modelled 98.8 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 48 d2d40a1 not modelled 98.8 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 49 c3h7yA_ not modelled 98.8 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 50 d1x82a_ not modelled 98.7 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 51 d1j3pa_ not modelled 98.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 52 c3rnsA_ not modelled 98.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 53 c2vqaC_ not modelled 98.7 26 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 54 d3bu7a1 not modelled 98.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 55 c3bu7A_ not modelled 98.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 56 c3es1A_ not modelled 98.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 57 d1j58a_ not modelled 98.5 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 58 d1fxza1 not modelled 98.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 59 c2xlfA_ not modelled 98.5 14 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 60 d1yfua1 not modelled 98.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 61 c1cauB_ not modelled 98.5 26 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 62 c2fqpD_ not modelled 98.4 14 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 63 c2cauA_ not modelled 98.4 19 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 64 d2et1a1 not modelled 98.4 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 65 d2phla2 not modelled 98.4 30 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 66 c2eaaB_ not modelled 98.4 18 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 67 d1uika2 not modelled 98.4 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 68 d1zvfa1 not modelled 98.4 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 69 c1fxzC_ not modelled 98.4 13 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 70 d1uija2 not modelled 98.4 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 71 c3s7eB_ not modelled 98.4 13 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 72 c1uijA_ not modelled 98.3 20 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 73 c3kglB_ not modelled 98.3 16 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 74 c2oziA_ not modelled 98.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 75 c3kscD_ not modelled 98.3 13 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 76 d1fxza2 not modelled 98.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 77 d1zrra1 not modelled 98.2 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 78 d2phla1 not modelled 98.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c3ehkC_ not modelled 98.2 18 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 80 c2opkC_ not modelled 98.2 22 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 81 c2d5fB_ not modelled 98.1 20 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 82 d1od5a2 not modelled 98.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 83 d2arca_ not modelled 98.0 19 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 84 c3c3vA_ not modelled 98.0 14 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 85 d1od5a1 not modelled 97.9 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 86 c2e9qA_ not modelled 97.7 14 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 87 c3ebrA_ not modelled 97.7 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 88 d1vr3a1 not modelled 97.5 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 89 c3o14B_ not modelled 97.5 17 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 90 c3balB_ not modelled 97.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:acetylacetone-cleaving enzyme; PDBTitle: crystal structure of an acetylacetone dioxygenase from2 acinetobacter johnsonii 91 c2y0oA_ not modelled 97.4 14 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 92 c3cjxE_ not modelled 97.3 13 PDB header:unknown function Chain: E: PDB Molecule:protein of unknown function with a cupin-like fold; PDBTitle: crystal structure of a protein of unknown function with a cupin-like2 fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 a resolution 93 c1ey2A_ not modelled 97.3 10 PDB header:oxidoreductase Chain: A: PDB Molecule:homogentisate 1,2-dioxygenase; PDBTitle: human homogentisate dioxygenase with fe(ii) 94 d1eyba_ not modelled 97.3 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Homogentisate dioxygenase 95 d1ywka1 not modelled 97.2 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 96 c3hqxA_ not modelled 97.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 97 c1ywkE_ not modelled 97.1 23 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 98 d1xrua1 not modelled 97.1 25 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 99 d1vrba1 not modelled 97.0 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 100 d2o1qa1 not modelled 97.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acetylacetone-cleaving enzyme-like 101 c3h1yA_ not modelled 96.8 20 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 102 d1pmia_ not modelled 96.8 27 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 103 c3mpbA_ not modelled 96.5 22 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 104 c3eo6B_ not modelled 96.5 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 105 d1qwra_ not modelled 96.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 106 c3d0jA_ not modelled 96.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 107 d2oyza1 not modelled 96.2 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 108 c2qjvB_ not modelled 96.0 7 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 109 d1zx5a1 not modelled 95.8 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 110 c3gbgA_ not modelled 95.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 111 c2qnkA_ not modelled 95.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase; PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase 112 c2vecA_ not modelled 95.4 15 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 113 c2xdvA_ not modelled 94.9 21 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 114 c2zklA_ not modelled 94.7 17 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 115 c3uyjA_ not modelled 94.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 116 d1tq5a1 not modelled 93.9 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 117 c3k2oB_ not modelled 93.9 15 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 118 c3al6A_ not modelled 93.4 24 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 119 d2pa7a1 not modelled 93.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 120 c3k3nA_ not modelled 93.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0