Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	V	S	C	A	M	R	L	H	S	G	V	F	P	D	Y	A	E	K	L	P	Q	E	E	K	M	E	K	E	D	S	F	P	Q	R	V	W	Q	I	V	A	A	I	P	E	G	Y	V	T	T	Y	G	D	V	A	K	L	A	G
Secondary structure
SS confidence
Disorder		?														?									?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	P	R	A	A	R	Q	V	G	G	V	L	K	R	L	P	E	G	S	T	L	P	W	H	R	V	V	N	R	H	G	T	I	S	L	T	G	P	D	L	Q	R	Q	R	Q	A	L	L	A	E	G	V	M	V	S	G	S	G	Q	I
Secondary structure
SS confidence
Disorder																																?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		D	L	Q	R	Y	R	W	N	Y
Secondary structure
SS confidence
Disorder							?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kim chain A Region: 31 - 128 Aligned: 98 Modelled: 98 Confidence: 100.0% Identity: 52% PDB header:transferase Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase; PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-2 methylguanine dna methyltransferase family protein from3 vibrio parahaemolyticus. northeast structural genomics4 consortium target vpr247. Phyre2 PDB 3gx4 chain X Region: 29 - 128 Aligned: 100 Modelled: 100 Confidence: 100.0% Identity: 42% PDB header:dna binding protein/dna Chain: X: PDB Molecule:alkyltransferase-like protein 1; PDBTitle: crystal structure analysis of s. pombe atl in complex with dna Phyre2 PDB 1sfe chain A Region: 2 - 111 Aligned: 105 Modelled: 110 Confidence: 100.0% Identity: 27% PDB header:dna-binding protein Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase; PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli Phyre2 PDB 1t39 chain A Region: 2 - 111 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 26% PDB header:transferase/dna Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna Phyre2 PDB 1mgt chain A Region: 2 - 112 Aligned: 106 Modelled: 111 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase); PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1 Phyre2 PDB 1wrj chain A Region: 2 - 114 Aligned: 106 Modelled: 113 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii Phyre2 PDB 1qnt chain A domain 1 Region: 31 - 114 Aligned: 84 Modelled: 84 Confidence: 100.0% Identity: 33% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Phyre2 PDB 1sfe chain A domain 1 Region: 30 - 112 Aligned: 83 Modelled: 83 Confidence: 100.0% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Phyre2 PDB 2g7h chain A Region: 2 - 128 Aligned: 114 Modelled: 124 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529) Phyre2 PDB 1mgt chain A domain 1 Region: 31 - 112 Aligned: 79 Modelled: 82 Confidence: 100.0% Identity: 35% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain Phyre2 PDB 2gxb chain A domain 1 Region: 35 - 72 Aligned: 36 Modelled: 38 Confidence: 55.8% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 1qgp chain A Region: 32 - 72 Aligned: 39 Modelled: 41 Confidence: 53.4% Identity: 28% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 1qbj chain C Region: 34 - 72 Aligned: 37 Modelled: 39 Confidence: 49.4% Identity: 30% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain Phyre2 PDB 2y9x chain C Region: 32 - 85 Aligned: 52 Modelled: 54 Confidence: 40.3% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone Phyre2 PDB 1s6l chain A domain 1 Region: 40 - 93 Aligned: 52 Modelled: 54 Confidence: 36.7% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MerB N-terminal domain-like Phyre2 PDB 1cf7 chain B Region: 33 - 59 Aligned: 24 Modelled: 27 Confidence: 35.8% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Cell cycle transcription factor e2f-dp Phyre2 PDB 2l01 chain A Region: 36 - 80 Aligned: 42 Modelled: 45 Confidence: 32.6% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153 Phyre2 PDB 1qb7 chain A Region: 17 - 74 Aligned: 58 Modelled: 58 Confidence: 30.1% Identity: 16% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2l02 chain B Region: 36 - 80 Aligned: 42 Modelled: 45 Confidence: 26.3% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 Phyre2 PDB 2cyy chain A domain 1 Region: 31 - 74 Aligned: 39 Modelled: 44 Confidence: 25.2% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Lrp/AsnC-like transcriptional regulator N-terminal domain Phyre2 1 c2kimA_ 2 c3gx4X_ 3 c1sfeA_ 4 c1t39A_ 5 c1mgtA_ 6 c1wrjA_ 7 d1qnta1 8 d1sfea1 9 c2g7hA_ 10 d1mgta1 11 d2gxba1 12 d1qgpa_ 13 d1qbjc_ 14 c2y9xC_ 15 d1s6la1 16 d1cf7b_ 17 c2l01A_ 18 d1qb7a_ 19 c2l02B_ 20 d2cyya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kimA_ 100.0 52 PDB header:transferase Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase; PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-2 methylguanine dna methyltransferase family protein from3 vibrio parahaemolyticus. northeast structural genomics4 consortium target vpr247. 2 c3gx4X_ 100.0 42 PDB header:dna binding protein/dna Chain: X: PDB Molecule:alkyltransferase-like protein 1; PDBTitle: crystal structure analysis of s. pombe atl in complex with dna 3 c1sfeA_ 100.0 27 PDB header:dna-binding protein Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase; PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli 4 c1t39A_ 100.0 26 PDB header:transferase/dna Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna 5 c1mgtA_ 100.0 28 PDB header:transferase Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase); PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1 6 c1wrjA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii 7 d1qnta1 100.0 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain 8 d1sfea1 100.0 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain 9 c2g7hA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529) 10 d1mgta1 100.0 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11 d2gxba1 55.8 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 12 d1qgpa_ 53.4 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 13 d1qbjc_ 49.4 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 14 c2y9xC_ 40.3 17 PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 15 d1s6la1 36.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 16 d1cf7b_ 35.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 17 c2l01A_ 32.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153 18 d1qb7a_ 30.1 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 19 c2l02B_ 26.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 20 d2cyya1 25.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 21 d1bw6a_ not modelled 24.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 22 c3chmA_ not modelled 24.6 10 PDB header:plant protein Chain: A: PDB Molecule:cop9 signalosome complex subunit 7; PDBTitle: crystal structure of pci domain from a. thaliana cop9 signalosome2 subunit 7 (csn7) 23 d1dpua_ not modelled 22.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 24 c1dpuA_ not modelled 22.2 10 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 25 c1i1gA_ not modelled 21.2 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 26 c1nh1A_ not modelled 19.3 17 PDB header:avirulence protein Chain: A: PDB Molecule:avirulence b protein; PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae. 27 d1nh1a_ not modelled 19.3 17 Fold:Antivirulence factor Superfamily:Antivirulence factor Family:Antivirulence factor 28 c1js8A_ not modelled 18.7 16 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemocyanin; PDBTitle: structure of a functional unit from octopus hemocyanin 29 c1x3uA_ not modelled 18.4 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot 30 c2cfxD_ not modelled 17.5 7 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 31 c2j6aA_ not modelled 17.1 11 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 32 d1or7a1 not modelled 16.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 33 c2p3xA_ not modelled 16.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:polyphenol oxidase, chloroplast; PDBTitle: crystal structure of grenache (vitis vinifera) polyphenol2 oxidase 34 d1g47a1 not modelled 15.4 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 35 c3l6wB_ not modelled 14.0 16 PDB header:oxygen binding Chain: B: PDB Molecule:hemocyanin 1; PDBTitle: structure of the collar functional unit (klh1-h) of keyhole2 limpet hemocyanin 36 d2hs5a1 not modelled 13.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 37 c2xzm8_ not modelled 13.4 13 PDB header:ribosome Chain: 8: PDB Molecule:rps25e,; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 38 c2e1cA_ not modelled 13.0 11 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 39 c3k2zA_ not modelled 12.9 17 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 40 d1uxca_ not modelled 12.5 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 41 d1mkma1 not modelled 11.1 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 42 c2dbbA_ not modelled 11.1 13 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 43 c3i4pA_ not modelled 10.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens 44 d1mzva_ not modelled 10.4 19 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 45 c3r1fO_ not modelled 10.2 14 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 46 c2cg4B_ not modelled 9.9 11 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 47 d1s7oa_ not modelled 9.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like 48 d1tnsa_ not modelled 9.5 18 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 49 d1biaa1 not modelled 9.3 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 50 d1bt3a_ not modelled 9.2 14 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Catechol oxidase 51 c1zx4B_ not modelled 8.9 17 PDB header:translation Chain: B: PDB Molecule:plasmid partition par b protein; PDBTitle: structure of parb bound to dna 52 d2cfxa1 not modelled 8.8 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 53 d1stza1 not modelled 8.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 54 d2cg4a1 not modelled 8.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 55 d1jhfa1 not modelled 8.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 56 d1j3ma_ not modelled 8.4 33 Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like 57 c2l4aA_ not modelled 8.2 10 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 58 d1lcda_ not modelled 8.2 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 59 c2krfB_ not modelled 7.9 19 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 60 d1xsva_ not modelled 7.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like 61 c2o8xA_ not modelled 7.9 23 PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc 62 c2ia0A_ not modelled 7.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 63 d2hsga1 not modelled 7.6 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 64 d1uxda_ not modelled 7.3 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 65 d1hlva1 not modelled 7.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 66 c3fmsA_ not modelled 7.2 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator 67 c1mkmA_ not modelled 7.2 7 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 68 c3hugA_ not modelled 6.9 23 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 69 d2j85a1 not modelled 6.8 18 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 70 c3mkyP_ not modelled 6.8 6 PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form 71 d1efaa1 not modelled 6.8 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 72 c3uo9B_ not modelled 6.3 14 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 73 c3ss4C_ not modelled 6.3 14 PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form 74 c2e7xA_ not modelled 6.1 13 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 75 c3mzyA_ not modelled 6.0 14 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 76 d1qpza1 not modelled 5.8 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 77 c3m6zA_ not modelled 5.8 27 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of an n-terminal 44 kda fragment of topoisomerase v2 in the presence of guanidium hydrochloride 78 c2p6tH_ not modelled 5.8 13 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 79 d1xmka1 not modelled 5.8 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 80 d1i1ga1 not modelled 5.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 81 d1rp3a2 not modelled 5.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 82 c2gqqB_ not modelled 5.5 9 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 83 c2vbzA_ not modelled 5.5 23 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 84 c3go5A_ not modelled 5.4 11 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 85 c3g5oA_ not modelled 5.4 16 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 86 d1q9ua_ not modelled 5.4 26 Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like 87 c3db0B_ not modelled 5.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:lin2891 protein; PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution 88 c1vftA_ not modelled 5.2 22 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0