Email l.a.kelley@imperial.ac.uk Description P0AGA2 Date Thu Jan 5 11:28:35 GMT 2012 Unique Job ID 1eba604be9f68670

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3j01A_ 100.0 100 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 2 c3dinF_ 100.0 43 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 3 c3dl8H_ 100.0 46 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 4 c2zqpY_ 100.0 41 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 5 c2akiY_ 100.0 100 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 6 c2wwbA_ 100.0 22 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 7 d1rh5a_ 100.0 19 Fold:Preprotein translocase SecY subunit Superfamily:Preprotein translocase SecY subunit Family:Preprotein translocase SecY subunit 8 c2wwaA_ 100.0 19 PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 9 c3mp7A_ 100.0 21 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 10 c2nscA_ 70.2 25 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritima 11 d1p9ya_ 67.5 11 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 12 d1t11a2 56.4 16 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 13 d1w26a2 52.3 17 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 14 c2d3o1_ 46.0 31 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 15 c1w26B_ 38.5 25 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 16 c3kysC_ 28.0 38 PDB header:transcription/protein binding Chain: C: PDB Molecule:transcriptional enhancer factor tef-1; PDBTitle: crystal structure of human yap and tead complex 17 d1zl8a1 27.1 18 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 18 c1t11A_ 25.8 16 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 19 c3l15A_ 25.4 45 PDB header:transcription Chain: A: PDB Molecule:transcriptional enhancer factor tef-4; PDBTitle: human tead2 transcriptional factor 20 d1y74a1 23.5 23 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 21 d1wpga4 not modelled 22.0 10 Fold:Calcium ATPase, transmembrane domain M Superfamily:Calcium ATPase, transmembrane domain M Family:Calcium ATPase, transmembrane domain M 22 d1wmxb_ not modelled 16.6 33 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 23 c2bbjB_ not modelled 8.4 15 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 24 d1ebfa2 not modelled 7.9 29 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Homoserine dehydrogenase-like 25 d1zq1c1 not modelled 7.7 21 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like 26 c3kpaB_ not modelled 7.5 36 PDB header:ligase Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme; PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable) 27 d1to9a_ not modelled 7.4 25 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 28 c1to9A_ not modelled 7.4 25 PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis 29 d1jjcb1 not modelled 7.0 19 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 30 d2bs2c1 not modelled 7.0 11 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC 31 c3qxlB_ not modelled 6.2 27 PDB header:signaling protein Chain: B: PDB Molecule:ras-specific guanine nucleotide-releasing factor ralgps1; PDBTitle: crystal structure of the cdc25 domain from ral-specific guanine-2 nucleotide exchange factor ralgps1a 32 d1xo1a1 not modelled 6.2 16 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 33 c2voyK_ not modelled 6.0 11 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 34 d2gycf1 not modelled 5.6 28 Fold:Ribosomal protein L9 C-domain Superfamily:Ribosomal protein L9 C-domain Family:Ribosomal protein L9 C-domain 35 c1mhsA_ not modelled 5.6 13 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 36 c1ysmA_ not modelled 5.5 30 PDB header:metal binding protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: nmr structure of n-terminal domain (residues 1-77) of siah-2 interacting protein. 37 d1ysma1 not modelled 5.5 30 Fold:Long alpha-hairpin Superfamily:Calcyclin-binding protein-like Family:Siah interacting protein N terminal domain-like 38 d1uv7a_ not modelled 5.5 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 39 c1uv7A_ not modelled 5.5 14 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 40 d2huec1 not modelled 5.5 19 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 41 c2k72A_ not modelled 5.4 27 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-23; PDBTitle: solution nmr structure of toxin-like potassium channel2 blocking domain in mmp23 42 d1nexa2 not modelled 5.3 35 Fold:POZ domain Superfamily:POZ domain Family:BTB/POZ domain 43 d1qd1a2 not modelled 5.3 16 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 44 c8tfvA_ not modelled 5.1 18 PDB header:antimicrobial Chain: A: PDB Molecule:protein (thanatin); PDBTitle: insect defense peptide