Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	K	L	I	L	A	S	T	S	P	W	R	R	A	L	L	E	K	L	Q	I	S	F	E	C	A	A	P	E	V	D	E	T	P	R	S	D	E	S	P	R	Q	L	V	L	R	L	A	Q	E	K	A	Q	S	L	A	S	R	Y
Secondary structure
SS confidence
Disorder		?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	D	H	L	I	I	G	S	D	Q	V	C	V	L	D	G	E	I	T	G	K	P	L	T	E	E	N	A	R	L	Q	L	R	K	A	S	G	N	I	V	T	F	Y	T	G	L	A	L	F	N	S	A	N	G	H	L	Q	T	E	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	P	F	D	V	H	F	R	H	L	S	E	A	E	I	D	N	Y	V	R	K	E	H	P	L	H	C	A	G	S	F	K	S	E	G	F	G	I	T	L	F	E	R	L	E	G	R	D	P	N	T	L	V	G	L	P	L	I	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.
Sequence		C	Q	M	L	R	R	E	G	K	N	P	L	M	G
Secondary structure
SS confidence
Disorder												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ex2 chain A Region: 1 - 187 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 35% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 2amh chain A domain 1 Region: 1 - 187 Aligned: 186 Modelled: 187 Confidence: 100.0% Identity: 19% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 2p5x chain B Region: 2 - 189 Aligned: 184 Modelled: 188 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein Phyre2 PDB 1k7k chain A Region: 1 - 124 Aligned: 119 Modelled: 123 Confidence: 97.2% Identity: 17% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 2car chain A domain 1 Region: 1 - 124 Aligned: 116 Modelled: 124 Confidence: 96.6% Identity: 13% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1v7r chain A Region: 1 - 125 Aligned: 115 Modelled: 125 Confidence: 96.5% Identity: 16% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1vp2 chain A Region: 3 - 124 Aligned: 118 Modelled: 122 Confidence: 95.7% Identity: 15% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 3tqu chain D Region: 1 - 124 Aligned: 118 Modelled: 124 Confidence: 93.7% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii Phyre2 PDB 1b78 chain A Region: 3 - 125 Aligned: 115 Modelled: 123 Confidence: 92.6% Identity: 17% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1pda chain A domain 1 Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 52.2% Identity: 17% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2ypn chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 50.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase Phyre2 PDB 3eq1 chain A Region: 5 - 28 Aligned: 24 Modelled: 24 Confidence: 47.6% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution Phyre2 PDB 2db5 chain A Region: 69 - 104 Aligned: 36 Modelled: 36 Confidence: 39.2% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein Phyre2 PDB 1pyy chain A domain 1 Region: 171 - 191 Aligned: 21 Modelled: 21 Confidence: 37.1% Identity: 24% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 1k25 chain A domain 1 Region: 171 - 191 Aligned: 21 Modelled: 21 Confidence: 34.8% Identity: 24% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 2o2t chain B Region: 69 - 104 Aligned: 36 Modelled: 36 Confidence: 34.6% Identity: 22% PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz Phyre2 PDB 3jr2 chain D Region: 4 - 95 Aligned: 90 Modelled: 92 Confidence: 28.0% Identity: 10% PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961 Phyre2 PDB 2e7k chain A Region: 69 - 103 Aligned: 33 Modelled: 35 Confidence: 27.8% Identity: 24% PDB header:membrane protein Chain: A: PDB Molecule:maguk p55 subfamily member 2; PDBTitle: solution structure of the pdz domain from human maguk p552 subfamily member 2 Phyre2 PDB 1pyy chain A domain 2 Region: 171 - 191 Aligned: 21 Modelled: 21 Confidence: 25.7% Identity: 5% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 1rp5 chain A domain 2 Region: 171 - 191 Aligned: 21 Modelled: 21 Confidence: 24.2% Identity: 5% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 1 d1ex2a_ 2 d2amha1 3 c2p5xB_ 4 d1k7ka_ 5 d2cara1 6 d1v7ra_ 7 d1vp2a_ 8 c3tquD_ 9 d1b78a_ 10 d1pdaa1 11 c2ypnA_ 12 c3eq1A_ 13 c2db5A_ 14 d1pyya1 15 d1k25a1 16 c2o2tB_ 17 c3jr2D_ 18 c2e7kA_ 19 d1pyya2 20 d1rp5a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ex2a_ 100.0 35 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 2 d2amha1 100.0 19 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 3 c2p5xB_ 100.0 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 4 d1k7ka_ 97.2 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 5 d2cara1 96.6 13 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 6 d1v7ra_ 96.5 16 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 7 d1vp2a_ 95.7 15 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 8 c3tquD_ 93.7 18 PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii 9 d1b78a_ 92.6 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 10 d1pdaa1 52.2 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 11 c2ypnA_ 50.0 17 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 12 c3eq1A_ 47.6 21 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 13 c2db5A_ 39.2 14 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the first pdz domain of inad-like2 protein 14 d1pyya1 37.1 24 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 15 d1k25a1 34.8 24 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 16 c2o2tB_ 34.6 22 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz 17 c3jr2D_ 28.0 10 PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961 18 c2e7kA_ 27.8 24 PDB header:membrane protein Chain: A: PDB Molecule:maguk p55 subfamily member 2; PDBTitle: solution structure of the pdz domain from human maguk p552 subfamily member 2 19 d1pyya2 25.7 5 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 20 d1rp5a2 24.2 5 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 21 d1gh9a_ not modelled 24.0 30 Fold:Rubredoxin-like Superfamily:Hypothetical protein MTH1184 Family:Hypothetical protein MTH1184 22 c3eggC_ not modelled 24.0 22 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin 23 d1e94a_ not modelled 23.7 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 24 d1k25a2 not modelled 23.0 5 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 25 d1u5wa1 not modelled 22.9 14 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 26 d1v8aa_ not modelled 18.9 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 27 c1tuoA_ not modelled 18.2 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative phosphomannomutase; PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8 28 d1wh1a_ not modelled 17.7 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 29 d1g3ka_ not modelled 17.6 15 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 30 d1ujva_ not modelled 15.7 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 31 c1t6zB_ not modelled 15.7 22 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 32 c3op1A_ not modelled 15.0 8 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 33 d1v6ba_ not modelled 14.9 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 34 c3a11D_ not modelled 14.1 16 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 35 d1y0ua_ not modelled 14.1 47 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 36 c3ouvA_ not modelled 14.0 10 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb 37 d2z3ba1 not modelled 14.0 7 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 38 c1nl3B_ not modelled 13.4 13 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 39 c2x0kB_ not modelled 13.0 28 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 40 d2eyqa2 not modelled 12.6 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 41 d1m4ya_ not modelled 12.1 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 42 c3juxA_ not modelled 12.0 13 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 43 c3pvsA_ not modelled 11.5 18 PDB header:recombination Chain: A: PDB Molecule:replication-associated recombination protein a; PDBTitle: structure and biochemical activities of escherichia coli mgsa 44 d1sknp_ not modelled 11.5 25 Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors 45 d1vaea_ not modelled 11.2 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 46 d1jgta2 not modelled 10.7 32 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 47 d2b8na1 not modelled 10.6 16 Fold:GckA/TtuD-like Superfamily:GckA/TtuD-like Family:GckA/TtuD-like 48 c2qjoB_ not modelled 10.1 14 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 49 c2du4B_ not modelled 10.1 37 PDB header:ligase/rna Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys 50 c2pnyA_ not modelled 9.9 24 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 51 d1gpua2 not modelled 9.7 9 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 52 c2kz5A_ not modelled 9.7 25 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 53 c3diwB_ not modelled 9.4 26 PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure 54 d1x4pa1 not modelled 9.2 39 Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain) 55 d1ujda_ not modelled 8.9 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 56 d1t1va_ not modelled 8.8 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like) 57 c3b76A_ not modelled 8.7 23 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx; PDBTitle: crystal structure of the third pdz domain of human ligand-of-numb2 protein-x (lnx1) in complex with the c-terminal peptide from the3 coxsackievirus and adenovirus receptor 58 d1i16a_ not modelled 8.5 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 59 d1zwya1 not modelled 8.3 16 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 60 c3dzvB_ not modelled 8.2 13 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 61 d1kwma2 not modelled 8.1 5 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 62 d1q7xa_ not modelled 8.1 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 63 d2fi0a1 not modelled 8.0 28 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 64 d2boaa2 not modelled 8.0 5 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 65 c2ktaA_ not modelled 8.0 22 PDB header:hydrolase Chain: A: PDB Molecule:putative helicase; PDBTitle: solution nmr structure of a domain of protein a6ky75 from bacteroides2 vulgatus, northeast structural genomics target bvr106a 66 d1ayea2 not modelled 7.8 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 67 d1fmfa_ not modelled 7.8 9 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 68 c1m1zB_ not modelled 7.8 43 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme 69 c1u37A_ not modelled 7.7 11 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 70 c2xi1A_ not modelled 7.7 22 PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample 71 d1p5dx2 not modelled 7.4 16 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 72 d1whda_ not modelled 7.2 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 73 c3hrdC_ not modelled 7.2 22 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 74 d1pyta_ not modelled 7.1 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 75 c2ehrA_ not modelled 7.1 15 PDB header:structural protein Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein 76 c3e7lD_ not modelled 7.1 16 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 77 d1mfga_ not modelled 7.1 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 78 c3k2tA_ not modelled 7.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2511 protein; PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a 79 d1ozia_ not modelled 7.0 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 80 d1nsaa2 not modelled 7.0 15 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 81 d2h3la1 not modelled 7.0 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 c1u38A_ not modelled 6.9 11 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 83 d1nfpa_ not modelled 6.9 12 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 84 c2edpA_ not modelled 6.8 9 PDB header:structural protein Chain: A: PDB Molecule:shroom family member 4; PDBTitle: solution structure of the pdz domain from human shroom2 family member 4 85 d2dlda2 not modelled 6.8 11 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 86 c3cyyA_ not modelled 6.7 17 PDB header:peptide binding protein Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide 87 d1f2ea2 not modelled 6.6 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 88 c2eq9C_ not modelled 6.5 22 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 89 d1pcaa1 not modelled 6.4 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 90 c2dluA_ not modelled 6.4 18 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the second pdz domain of human inad-2 like protein 91 c2ragB_ not modelled 6.3 21 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus 92 d1um7a_ not modelled 6.2 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 93 c2eq7C_ not modelled 6.2 14 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 94 d1u3ba2 not modelled 6.2 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 95 c3gkxB_ not modelled 6.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 96 d1ueqa_ not modelled 6.2 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 97 c3sbxC_ not modelled 6.1 19 PDB header:unknown function Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp 98 c2klxA_ not modelled 6.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 99 d1ojra_ not modelled 6.0 24 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0