Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	Q	I	P	Q	N	Y	I	H	T	R	S	T	P	F	W	N	K	Q	T	A	P	A	G	I	F	E	R	H	L	D	K	G	T	R	P	G	V	Y	P	R	L	S	V	M	H	G	A	V	K	Y	L	G	Y	A	D	E	H	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?									?		?														?		?																							?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Sequence		A	E	P	D	Q	V	I	L	I	E	A	G	Q	F	A	V	F	P	P	E	K	W	H	N	I	E	A	M	T	D	D	T	Y	F	N	I	D	F	F	V	A	P	E	V	L	M	E	G	A	Q	Q	R	K	V	I	H	N	G	K
Secondary structure
SS confidence
Disorder																																																			?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bb6 chain A domain 1 Region: 1 - 109 Aligned: 109 Modelled: 107 Confidence: 100.0% Identity: 96% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TehB-like Phyre2 PDB 3dl3 chain A domain 1 Region: 3 - 102 Aligned: 96 Modelled: 95 Confidence: 100.0% Identity: 41% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TehB-like Phyre2 PDB 3m70 chain A Region: 6 - 117 Aligned: 108 Modelled: 112 Confidence: 100.0% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tellurite resistance protein tehb homolog; PDBTitle: crystal structure of tehb from haemophilus influenzae Phyre2 PDB 3eqe chain B Region: 28 - 102 Aligned: 69 Modelled: 75 Confidence: 96.8% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112. Phyre2 PDB 2gu9 chain B Region: 30 - 104 Aligned: 63 Modelled: 67 Confidence: 96.6% Identity: 19% PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure Phyre2 PDB 2o8q chain A Region: 30 - 94 Aligned: 54 Modelled: 65 Confidence: 96.5% Identity: 30% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution Phyre2 PDB 1juh chain A Region: 30 - 98 Aligned: 62 Modelled: 69 Confidence: 95.8% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 1y3t chain A domain 1 Region: 40 - 98 Aligned: 51 Modelled: 59 Confidence: 95.7% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 1v70 chain A Region: 30 - 103 Aligned: 62 Modelled: 74 Confidence: 95.6% Identity: 15% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 2q30 chain C Region: 30 - 98 Aligned: 58 Modelled: 69 Confidence: 95.5% Identity: 28% PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution Phyre2 PDB 3fjs chain C Region: 30 - 104 Aligned: 61 Modelled: 75 Confidence: 95.5% Identity: 15% PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution Phyre2 PDB 3d82 chain A Region: 30 - 96 Aligned: 54 Modelled: 67 Confidence: 95.4% Identity: 26% PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution Phyre2 PDB 2gm6 chain A domain 1 Region: 28 - 102 Aligned: 68 Modelled: 75 Confidence: 95.4% Identity: 21% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Cysteine dioxygenase type I Phyre2 PDB 2ic1 chain A domain 1 Region: 27 - 102 Aligned: 70 Modelled: 76 Confidence: 95.3% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Cysteine dioxygenase type I Phyre2 PDB 3rns chain A Region: 43 - 96 Aligned: 46 Modelled: 53 Confidence: 95.1% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 2i45 chain C Region: 30 - 96 Aligned: 55 Modelled: 67 Confidence: 95.1% Identity: 18% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis Phyre2 PDB 1x82 chain A Region: 28 - 100 Aligned: 68 Modelled: 73 Confidence: 95.1% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Glucose-6-phosphate isomerase, GPI Phyre2 PDB 3eln chain A domain 1 Region: 28 - 102 Aligned: 69 Modelled: 75 Confidence: 95.0% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Cysteine dioxygenase type I Phyre2 PDB 2ozj chain B Region: 30 - 96 Aligned: 53 Modelled: 64 Confidence: 95.0% Identity: 17% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution Phyre2 PDB 1y9q chain A domain 2 Region: 36 - 96 Aligned: 53 Modelled: 61 Confidence: 94.8% Identity: 23% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Probable transcriptional regulator VC1968, C-terminal domain Phyre2 1 d3bb6a1 2 d3dl3a1 3 c3m70A_ 4 c3eqeB_ 5 c2gu9B_ 6 c2o8qA_ 7 d1juha_ 8 d1y3ta1 9 d1v70a_ 10 c2q30C_ 11 c3fjsC_ 12 c3d82A_ 13 d2gm6a1 14 d2ic1a1 15 c3rnsA_ 16 c2i45C_ 17 d1x82a_ 18 d3elna1 19 c2ozjB_ 20 d1y9qa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3bb6a1 100.0 96 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 2 d3dl3a1 100.0 41 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 3 c3m70A_ 100.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tellurite resistance protein tehb homolog; PDBTitle: crystal structure of tehb from haemophilus influenzae 4 c3eqeB_ 96.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112. 5 c2gu9B_ 96.6 19 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 6 c2o8qA_ 96.5 30 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 7 d1juha_ 95.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 8 d1y3ta1 95.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 9 d1v70a_ 95.6 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 10 c2q30C_ 95.5 28 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 11 c3fjsC_ 95.5 15 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 12 c3d82A_ 95.4 26 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 13 d2gm6a1 95.4 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 14 d2ic1a1 95.3 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 15 c3rnsA_ 95.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 16 c2i45C_ 95.1 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 17 d1x82a_ 95.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 18 d3elna1 95.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 19 c2ozjB_ 95.0 17 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 20 d1y9qa2 94.8 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 21 d1rc6a_ not modelled 94.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 22 c2oa2A_ not modelled 94.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 23 c3ibmB_ not modelled 94.5 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 24 d1yhfa1 not modelled 94.4 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 25 c3h8uA_ not modelled 93.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 26 c2zklA_ not modelled 93.8 15 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 27 d2pa7a1 not modelled 93.8 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 28 d1o4ta_ not modelled 93.7 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 29 d1vj2a_ not modelled 93.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 30 d1j58a_ not modelled 93.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 31 d2et1a1 not modelled 93.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 32 c3h7yA_ not modelled 93.1 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 33 c2vqaC_ not modelled 93.0 18 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 34 d1vrba1 not modelled 93.0 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 35 d1j3pa_ not modelled 93.0 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 36 c3kgzA_ not modelled 92.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 37 c3k2oB_ not modelled 92.3 17 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 38 d1sfna_ not modelled 92.1 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 39 d1yfua1 not modelled 91.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 40 c3cewA_ not modelled 91.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 41 c3kv4A_ not modelled 91.3 23 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 42 c3pu3A_ not modelled 91.0 21 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 43 c3al6A_ not modelled 90.9 18 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 44 c2opkC_ not modelled 90.1 11 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 45 c3uyjA_ not modelled 90.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 46 c3kvaA_ not modelled 90.1 19 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 47 d1zvfa1 not modelled 89.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 48 c2yu1A_ not modelled 89.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 49 c2pfwB_ not modelled 89.6 19 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 50 c3jzvA_ not modelled 89.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 51 d2o1qa1 not modelled 89.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acetylacetone-cleaving enzyme-like 52 d2f4pa1 not modelled 89.3 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 53 d2bnma2 not modelled 89.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 54 d1sefa_ not modelled 89.2 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 55 c1sefA_ not modelled 89.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 56 d1sq4a_ not modelled 89.2 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 57 c3k3nA_ not modelled 88.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 58 c3kv5D_ not modelled 88.3 18 PDB header:h3k4me3 binding protein, transferase Chain: D: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: structure of kiaa1718, human jumonji demethylase, in complex2 with n-oxalylglycine 59 d2b8ma1 not modelled 87.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 60 d1lr5a_ not modelled 87.4 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 61 c2d40C_ not modelled 86.5 16 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 62 c1y9qA_ not modelled 85.6 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 63 d1dgwa_ not modelled 85.3 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 64 c2vpvA_ not modelled 84.8 17 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 65 d1uika1 not modelled 84.5 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 66 c3lwcA_ not modelled 84.5 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 67 d1h2ka_ not modelled 84.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 68 c3n9mC_ not modelled 83.7 22 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 69 c2xdvA_ not modelled 83.2 13 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 70 c3i7dB_ not modelled 83.0 21 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 71 c2fqpD_ not modelled 81.5 16 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 72 d1uija1 not modelled 81.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 73 c3bcwB_ not modelled 80.8 15 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 74 d1zrra1 not modelled 79.8 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 75 d2d40a1 not modelled 79.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 76 c2bnoA_ not modelled 79.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 77 d1od5a2 not modelled 78.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 78 d2phla2 not modelled 78.0 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c3ejkA_ not modelled 75.5 22 PDB header:isomerase Chain: A: PDB Molecule:dtdp sugar isomerase; PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution 80 d1fxza2 not modelled 74.2 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 81 c3balB_ not modelled 74.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:acetylacetone-cleaving enzyme; PDBTitle: crystal structure of an acetylacetone dioxygenase from2 acinetobacter johnsonii 82 c3dkqB_ not modelled 72.1 15 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 83 c2y0oA_ not modelled 72.1 17 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 84 c3ht2A_ not modelled 70.2 16 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 85 d2phda1 not modelled 70.0 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 86 d1uika2 not modelled 68.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 87 c3es1A_ not modelled 64.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 88 c2cauA_ not modelled 64.3 17 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 89 c2oziA_ not modelled 62.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 90 c1cauB_ not modelled 61.0 15 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 91 c3mpbA_ not modelled 57.2 11 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 92 d3bu7a1 not modelled 57.0 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 93 c3bu7A_ not modelled 57.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 94 c3ehkC_ not modelled 48.8 15 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 95 d1wlta1 not modelled 46.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 96 d1o5ua_ not modelled 46.3 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 97 c3ka5A_ not modelled 44.7 21 PDB header:chaperone Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1); PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a 98 c3l2hD_ not modelled 43.6 19 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 99 c3kglB_ not modelled 40.5 12 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 100 c3bvcA_ not modelled 38.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ism_01780; PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism 101 c1fxzC_ not modelled 35.0 9 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 102 d2arca_ not modelled 34.9 18 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 103 c3ebrA_ not modelled 34.2 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 104 d1uija2 not modelled 34.0 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 105 c3mlhA_ not modelled 33.8 26 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain 106 d1gl0i_ not modelled 33.7 30 Fold:PMP inhibitors Superfamily:PMP inhibitors Family:PMP inhibitors 107 c1ey2A_ not modelled 33.6 8 PDB header:oxidoreductase Chain: A: PDB Molecule:homogentisate 1,2-dioxygenase; PDBTitle: human homogentisate dioxygenase with fe(ii) 108 d1eyba_ not modelled 33.6 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Homogentisate dioxygenase 109 d1a6ca1 not modelled 32.8 20 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 110 d1w9ya1 not modelled 31.4 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 111 d1ep0a_ not modelled 29.9 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 112 c1upiA_ not modelled 29.1 14 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 113 c2f91B_ not modelled 28.8 30 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine protease inhibitor i/ii; PDBTitle: 1.2a resolution structure of a crayfish trypsin complexed2 with a peptide inhibitor, sgti 114 c3c3vA_ not modelled 28.7 11 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 115 d2ixca1 not modelled 27.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 116 d2phla1 not modelled 27.6 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 117 c3d0jA_ not modelled 25.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 118 d2ixha1 not modelled 24.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:dTDP-sugar isomerase 119 c2d5fB_ not modelled 23.5 14 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 120 d2bdra1 not modelled 23.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Ureidoglycolate hydrolase AllA

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0